Wall clock time and date at job start Tue Mar 31 2020 07:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50704 * 119.99805 * 2 1 4 4 C 1.52999 * 109.46554 * 125.00031 * 3 2 1 5 5 C 1.52998 * 109.46994 * 179.97438 * 4 3 2 6 6 N 1.46502 * 109.47360 * 180.02562 * 5 4 3 7 7 C 1.34782 * 120.00166 * 180.02562 * 6 5 4 8 8 O 1.21350 * 119.99528 * 359.97438 * 7 6 5 9 9 C 1.49446 * 120.00084 * 179.97438 * 7 6 5 10 10 O 1.21356 * 119.99803 * 353.37756 * 9 7 6 11 11 N 1.34768 * 120.00057 * 173.37736 * 9 7 6 12 12 C 1.46923 * 120.63140 * 353.06161 * 11 9 7 13 13 C 1.53197 * 108.77603 * 126.41596 * 12 11 9 14 14 C 1.53036 * 109.34037 * 54.62030 * 13 12 11 15 15 C 1.53043 * 109.53781 * 298.68543 * 14 13 12 16 16 H 1.09000 * 109.49772 * 301.34791 * 15 14 13 17 17 C 1.50699 * 109.49861 * 181.28187 * 15 14 13 18 18 H 1.08009 * 119.99826 * 0.06421 * 17 15 14 19 19 C 1.37874 * 120.00391 * 180.34183 * 17 15 14 20 20 N 1.31511 * 119.99935 * 359.72505 * 19 17 15 21 21 Si 1.86803 * 120.00371 * 179.72468 * 19 17 15 22 22 H 1.48501 * 109.46889 * 59.99781 * 21 19 17 23 23 H 1.48493 * 109.47092 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46907 * 300.00065 * 21 19 17 25 25 C 1.46927 * 120.63303 * 173.08900 * 11 9 7 26 26 H 1.07999 * 120.00013 * 359.97438 * 1 2 3 27 27 H 1.07998 * 120.00074 * 179.97438 * 1 2 3 28 28 H 1.07999 * 120.00013 * 180.02562 * 2 1 3 29 29 H 1.08999 * 109.47107 * 5.00669 * 3 2 1 30 30 H 1.08993 * 109.47345 * 244.99933 * 3 2 1 31 31 H 1.09004 * 109.47307 * 60.00284 * 4 3 2 32 32 H 1.08999 * 109.47615 * 300.00179 * 4 3 2 33 33 H 1.09007 * 109.47352 * 60.00069 * 5 4 3 34 34 H 1.09010 * 109.47442 * 300.00155 * 5 4 3 35 35 H 0.96996 * 120.00059 * 359.97438 * 6 5 4 36 36 H 1.08998 * 109.59171 * 246.19792 * 12 11 9 37 37 H 1.09003 * 109.58922 * 6.48999 * 12 11 9 38 38 H 1.08995 * 109.50150 * 174.58993 * 13 12 11 39 39 H 1.09009 * 109.49617 * 294.68452 * 13 12 11 40 40 H 1.08997 * 109.49188 * 178.64856 * 14 13 12 41 41 H 1.09001 * 109.43006 * 58.68768 * 14 13 12 42 42 H 0.97000 * 120.00590 * 180.02562 * 20 19 17 43 43 H 1.09003 * 109.59192 * 113.79627 * 25 11 9 44 44 H 1.08998 * 109.70190 * 353.44355 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0349 1.3330 1.1817 5 6 3.8004 2.6578 1.1814 6 7 4.7311 2.6843 2.3125 7 6 5.5161 3.7612 2.5142 8 8 5.4522 4.7086 1.7586 9 6 6.4651 3.7885 3.6684 10 8 6.4450 2.8970 4.4916 11 7 7.3431 4.8030 3.7950 12 6 7.4848 5.8074 2.7321 13 6 7.3092 7.2009 3.3439 14 6 8.2911 7.3720 4.5052 15 6 7.9937 6.3288 5.5848 16 1 6.9672 6.4468 5.9318 17 6 8.9407 6.5182 6.7417 18 1 9.6803 7.3047 6.7110 19 6 8.8668 5.6838 7.8368 20 7 7.9663 4.7261 7.8742 21 14 10.0456 5.9137 9.2676 22 1 9.8706 7.2729 9.8396 23 1 9.7607 4.8972 10.3119 24 1 11.4422 5.7542 8.7887 25 6 8.1771 4.9255 4.9984 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3585 2.1317 0.0897 30 1 2.6212 1.4027 -0.9313 31 1 3.7399 0.5065 1.0921 32 1 2.4772 1.2355 2.1130 33 1 3.0958 3.4846 1.2708 34 1 4.3583 2.7549 0.2499 35 1 4.7819 1.9272 2.9166 36 1 8.4750 5.7275 2.2836 37 1 6.7237 5.6423 1.9695 38 1 7.5069 7.9586 2.5858 39 1 6.2889 7.3109 3.7115 40 1 8.1849 8.3714 4.9270 41 1 9.3098 7.2379 4.1415 42 1 7.9140 4.1393 8.6448 43 1 9.2238 4.7736 4.7346 44 1 7.8737 4.1798 5.7333 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118637523.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:37 Heat of formation + Delta-G solvation = -51.955565 kcal Electronic energy + Delta-G solvation = -23667.841165 eV Core-core repulsion = 20199.694853 eV Total energy + Delta-G solvation = -3468.146312 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.48929 -38.38255 -36.92411 -36.65996 -34.71833 -33.22802 -31.74008 -31.28814 -29.72746 -26.96610 -25.35379 -24.91292 -22.72270 -21.80396 -21.77273 -20.27012 -19.96856 -18.74889 -17.26028 -16.62213 -16.30450 -16.12354 -15.49101 -15.42529 -14.82752 -14.56929 -14.55565 -13.88482 -13.75775 -13.62903 -13.24095 -13.02253 -12.76807 -12.57785 -12.21621 -12.04643 -12.03663 -11.74449 -11.37715 -11.24144 -11.15927 -10.96103 -10.70878 -10.46302 -10.26761 -10.04839 -9.87769 -9.70745 -9.25848 -9.20582 -9.10547 -8.51644 -8.40451 -7.81449 -6.01575 -4.09819 1.80548 1.91952 2.72774 3.31798 3.37283 3.38983 3.66009 3.97789 4.36984 4.41989 4.58162 4.70941 4.83451 4.92156 5.02694 5.24441 5.28857 5.34108 5.50364 5.56208 5.66009 5.70829 5.78255 5.84837 5.91418 6.09182 6.26731 6.28366 6.40511 6.41013 6.61383 6.63833 6.76652 6.87976 7.00486 7.06190 7.19121 7.25795 7.59852 7.83798 7.96031 8.01092 8.17881 8.35975 8.58902 8.94030 9.55611 11.04035 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.025447 B = 0.002995 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.071180 B = 9347.202031 C =10199.879185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.153 4.153 3 C -0.091 4.091 4 C -0.129 4.129 5 C 0.116 3.884 6 N -0.705 5.705 7 C 0.511 3.489 8 O -0.515 6.515 9 C 0.494 3.506 10 O -0.525 6.525 11 N -0.567 5.567 12 C 0.050 3.950 13 C -0.127 4.127 14 C -0.113 4.113 15 C 0.041 3.959 16 H 0.029 0.971 17 C -0.519 4.519 18 H 0.059 0.941 19 C 0.062 3.938 20 N -0.883 5.883 21 Si 0.894 3.106 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 C 0.108 3.892 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.109 0.891 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.413 0.587 36 H 0.054 0.946 37 H 0.144 0.856 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.050 0.950 41 H 0.049 0.951 42 H 0.264 0.736 43 H 0.048 0.952 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.307 -6.611 -15.902 20.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.171 4.171 3 C -0.129 4.129 4 C -0.167 4.167 5 C -0.007 4.007 6 N -0.358 5.358 7 C 0.294 3.706 8 O -0.393 6.393 9 C 0.275 3.725 10 O -0.403 6.403 11 N -0.298 5.298 12 C -0.072 4.072 13 C -0.166 4.166 14 C -0.151 4.151 15 C 0.022 3.978 16 H 0.047 0.953 17 C -0.558 4.558 18 H 0.077 0.923 19 C -0.141 4.141 20 N -0.521 5.521 21 Si 0.722 3.278 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.202 1.202 25 C -0.012 4.012 26 H 0.115 0.885 27 H 0.115 0.885 28 H 0.127 0.873 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.250 0.750 36 H 0.072 0.928 37 H 0.160 0.840 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.066 0.934 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -10.411 -6.554 -15.870 20.080 hybrid contribution 0.713 -0.222 1.150 1.371 sum -9.698 -6.775 -14.720 18.885 Atomic orbital electron populations 1.23882 0.96009 1.01913 1.01355 1.22944 0.96043 0.98450 0.99709 1.20669 0.98059 0.95759 0.98405 1.21764 0.98378 0.96978 0.99582 1.21472 0.91848 0.98212 0.89190 1.45846 1.39592 1.19837 1.30548 1.20786 0.81633 0.82519 0.85646 1.90299 1.67188 1.34258 1.47542 1.19763 0.82656 0.83914 0.86155 1.90756 1.70184 1.36193 1.43152 1.48436 1.36697 1.23972 1.20735 1.23081 1.04215 0.88131 0.91756 1.21854 1.00555 0.95713 0.98433 1.21666 0.97460 1.00211 0.95758 1.18970 0.97850 0.89107 0.91916 0.95284 1.21062 1.17789 1.15814 1.01108 0.92292 1.25061 0.95506 0.95146 0.98369 1.69858 1.33690 1.18177 1.30364 0.86620 0.81349 0.77835 0.81988 1.20260 1.21251 1.20221 1.22487 0.91406 1.03717 0.83584 0.88535 0.88549 0.87316 0.91052 0.90538 0.90819 0.90770 0.90988 0.90986 0.75031 0.92763 0.84004 0.92285 0.92353 0.93073 0.93256 0.92571 0.93397 0.85875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.24 14.32 29.02 0.42 -0.82 16 2 C -0.15 -1.00 9.52 -36.02 -0.34 -1.35 16 3 C -0.09 -0.58 5.66 -27.88 -0.16 -0.74 16 4 C -0.13 -0.93 5.31 -26.73 -0.14 -1.07 16 5 C 0.12 1.11 5.67 -4.04 -0.02 1.09 16 6 N -0.70 -8.98 5.55 -60.72 -0.34 -9.31 16 7 C 0.51 8.48 7.78 -11.58 -0.09 8.39 16 8 O -0.52 -8.87 13.10 5.50 0.07 -8.80 16 9 C 0.49 10.08 7.74 -11.59 -0.09 9.99 16 10 O -0.53 -12.02 15.95 5.49 0.09 -11.93 16 11 N -0.57 -12.00 2.97 -173.27 -0.51 -12.51 16 12 C 0.05 0.90 6.27 -3.71 -0.02 0.88 16 13 C -0.13 -2.30 6.08 -26.61 -0.16 -2.47 16 14 C -0.11 -2.36 5.11 -26.69 -0.14 -2.50 16 15 C 0.04 1.02 2.25 -91.65 -0.21 0.82 16 16 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 17 C -0.52 -14.15 8.57 -34.44 -0.30 -14.44 16 18 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 19 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 20 N -0.88 -25.59 11.38 55.43 0.63 -24.96 16 21 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 25 C 0.11 2.65 5.38 -3.71 -0.02 2.63 16 26 H 0.10 0.58 7.84 -52.49 -0.41 0.16 16 27 H 0.10 0.53 8.06 -52.49 -0.42 0.11 16 28 H 0.11 0.64 8.06 -52.49 -0.42 0.22 16 29 H 0.07 0.45 7.79 -51.93 -0.40 0.04 16 30 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.68 8.14 -51.92 -0.42 0.25 16 35 H 0.41 4.95 7.96 -40.82 -0.33 4.62 16 36 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.14 2.49 3.78 -56.75 -0.21 2.28 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.06 1.10 8.14 -51.92 -0.42 0.68 16 40 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 43 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.12 3.46 5.17 -51.93 -0.27 3.19 16 LS Contribution 357.18 15.07 5.38 5.38 Total: -1.00 -30.74 357.18 -8.15 -38.89 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -7.08 Total: 5.00 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: -1.37 Total: 2.02 kcal Atomic # 7 Polarization: -46.57 SS G_CDS: -0.22 Total: -46.79 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: 0.16 Total: -20.73 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.74 -8.15 -38.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118637523.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.068 kcal (2) G-P(sol) polarization free energy of solvation -30.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds