Wall clock time and date at job start Tue Mar 31 2020 07:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50704 * 119.99805 * 2 1 4 4 C 1.52999 * 109.46554 * 125.00031 * 3 2 1 5 5 C 1.52998 * 109.46994 * 179.97438 * 4 3 2 6 6 N 1.46502 * 109.47360 * 180.02562 * 5 4 3 7 7 C 1.34782 * 120.00166 * 180.02562 * 6 5 4 8 8 O 1.21350 * 119.99528 * 359.97438 * 7 6 5 9 9 C 1.49446 * 120.00084 * 179.97438 * 7 6 5 10 10 O 1.21356 * 119.99803 * 353.37756 * 9 7 6 11 11 N 1.34768 * 120.00057 * 173.37736 * 9 7 6 12 12 C 1.46923 * 120.63140 * 353.06161 * 11 9 7 13 13 C 1.53197 * 108.77603 * 126.41596 * 12 11 9 14 14 C 1.53036 * 109.34037 * 54.62030 * 13 12 11 15 15 C 1.53043 * 109.53781 * 298.68543 * 14 13 12 16 16 H 1.09000 * 109.49772 * 301.34791 * 15 14 13 17 17 C 1.50699 * 109.49861 * 181.28187 * 15 14 13 18 18 H 1.08009 * 119.99826 * 0.06421 * 17 15 14 19 19 C 1.37874 * 120.00391 * 180.34183 * 17 15 14 20 20 N 1.31511 * 119.99935 * 359.72505 * 19 17 15 21 21 Si 1.86803 * 120.00371 * 179.72468 * 19 17 15 22 22 H 1.48501 * 109.46889 * 59.99781 * 21 19 17 23 23 H 1.48493 * 109.47092 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46907 * 300.00065 * 21 19 17 25 25 C 1.46927 * 120.63303 * 173.08900 * 11 9 7 26 26 H 1.07999 * 120.00013 * 359.97438 * 1 2 3 27 27 H 1.07998 * 120.00074 * 179.97438 * 1 2 3 28 28 H 1.07999 * 120.00013 * 180.02562 * 2 1 3 29 29 H 1.08999 * 109.47107 * 5.00669 * 3 2 1 30 30 H 1.08993 * 109.47345 * 244.99933 * 3 2 1 31 31 H 1.09004 * 109.47307 * 60.00284 * 4 3 2 32 32 H 1.08999 * 109.47615 * 300.00179 * 4 3 2 33 33 H 1.09007 * 109.47352 * 60.00069 * 5 4 3 34 34 H 1.09010 * 109.47442 * 300.00155 * 5 4 3 35 35 H 0.96996 * 120.00059 * 359.97438 * 6 5 4 36 36 H 1.08998 * 109.59171 * 246.19792 * 12 11 9 37 37 H 1.09003 * 109.58922 * 6.48999 * 12 11 9 38 38 H 1.08995 * 109.50150 * 174.58993 * 13 12 11 39 39 H 1.09009 * 109.49617 * 294.68452 * 13 12 11 40 40 H 1.08997 * 109.49188 * 178.64856 * 14 13 12 41 41 H 1.09001 * 109.43006 * 58.68768 * 14 13 12 42 42 H 0.97000 * 120.00590 * 180.02562 * 20 19 17 43 43 H 1.09003 * 109.59192 * 113.79627 * 25 11 9 44 44 H 1.08998 * 109.70190 * 353.44355 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0349 1.3330 1.1817 5 6 3.8004 2.6578 1.1814 6 7 4.7311 2.6843 2.3125 7 6 5.5161 3.7612 2.5142 8 8 5.4522 4.7086 1.7586 9 6 6.4651 3.7885 3.6684 10 8 6.4450 2.8970 4.4916 11 7 7.3431 4.8030 3.7950 12 6 7.4848 5.8074 2.7321 13 6 7.3092 7.2009 3.3439 14 6 8.2911 7.3720 4.5052 15 6 7.9937 6.3288 5.5848 16 1 6.9672 6.4468 5.9318 17 6 8.9407 6.5182 6.7417 18 1 9.6803 7.3047 6.7110 19 6 8.8668 5.6838 7.8368 20 7 7.9663 4.7261 7.8742 21 14 10.0456 5.9137 9.2676 22 1 9.8706 7.2729 9.8396 23 1 9.7607 4.8972 10.3119 24 1 11.4422 5.7542 8.7887 25 6 8.1771 4.9255 4.9984 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3585 2.1317 0.0897 30 1 2.6212 1.4027 -0.9313 31 1 3.7399 0.5065 1.0921 32 1 2.4772 1.2355 2.1130 33 1 3.0958 3.4846 1.2708 34 1 4.3583 2.7549 0.2499 35 1 4.7819 1.9272 2.9166 36 1 8.4750 5.7275 2.2836 37 1 6.7237 5.6423 1.9695 38 1 7.5069 7.9586 2.5858 39 1 6.2889 7.3109 3.7115 40 1 8.1849 8.3714 4.9270 41 1 9.3098 7.2379 4.1415 42 1 7.9140 4.1393 8.6448 43 1 9.2238 4.7736 4.7346 44 1 7.8737 4.1798 5.7333 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118637523.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:36 Heat of formation + Delta-G solvation = -71.477905 kcal Electronic energy + Delta-G solvation = -23668.687717 eV Core-core repulsion = 20199.694853 eV Total energy + Delta-G solvation = -3468.992865 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.93971 -39.85000 -38.53782 -37.52420 -35.70853 -35.07065 -33.46356 -32.05891 -31.56989 -28.14007 -27.06452 -26.40449 -24.03331 -23.48256 -22.66912 -21.62401 -20.59712 -20.39135 -18.87645 -18.18372 -17.89251 -17.24799 -16.83000 -16.53004 -16.42583 -16.02378 -15.63986 -15.42117 -15.07581 -14.79356 -14.56284 -14.44718 -14.24483 -13.88038 -13.65052 -13.47473 -13.07318 -12.85398 -12.75193 -12.64933 -12.50824 -12.29410 -12.17697 -11.78983 -11.73900 -11.70860 -11.59906 -11.16956 -10.98599 -10.54904 -10.34556 -10.19659 -9.97829 -9.54873 -8.12479 -6.29131 0.35248 1.31955 1.42119 1.43596 1.50041 1.51876 2.15472 2.41268 2.59817 3.15693 3.32540 3.75607 4.01732 4.15365 4.19065 4.23521 4.33753 4.35926 4.47161 4.57815 4.64472 4.68322 4.73210 4.81695 4.82083 4.92784 5.05445 5.07140 5.16049 5.20327 5.23737 5.27507 5.32020 5.40352 5.53916 5.56764 5.80592 5.83790 5.92938 5.93424 6.01180 6.29406 6.45121 6.74745 6.83213 6.98692 7.40676 8.91486 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.025447 B = 0.002995 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.071180 B = 9347.202031 C =10199.879185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.161 4.161 3 C -0.088 4.088 4 C -0.120 4.120 5 C 0.114 3.886 6 N -0.687 5.687 7 C 0.520 3.480 8 O -0.520 6.520 9 C 0.484 3.516 10 O -0.560 6.560 11 N -0.575 5.575 12 C 0.049 3.951 13 C -0.120 4.120 14 C -0.107 4.107 15 C 0.039 3.961 16 H -0.012 1.012 17 C -0.536 4.536 18 H 0.063 0.937 19 C 0.010 3.990 20 N -0.916 5.916 21 Si 0.960 3.040 22 H -0.269 1.269 23 H -0.287 1.287 24 H -0.267 1.267 25 C 0.121 3.879 26 H 0.098 0.902 27 H 0.103 0.897 28 H 0.114 0.886 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.418 0.582 36 H 0.071 0.929 37 H 0.156 0.844 38 H 0.098 0.902 39 H 0.045 0.955 40 H 0.053 0.947 41 H 0.057 0.943 42 H 0.262 0.738 43 H 0.044 0.956 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.323 -6.261 -17.630 21.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.179 4.179 3 C -0.126 4.126 4 C -0.158 4.158 5 C -0.008 4.008 6 N -0.339 5.339 7 C 0.301 3.699 8 O -0.399 6.399 9 C 0.267 3.733 10 O -0.439 6.439 11 N -0.306 5.306 12 C -0.071 4.071 13 C -0.158 4.158 14 C -0.144 4.144 15 C 0.019 3.981 16 H 0.006 0.994 17 C -0.574 4.574 18 H 0.081 0.919 19 C -0.189 4.189 20 N -0.554 5.554 21 Si 0.785 3.215 22 H -0.194 1.194 23 H -0.213 1.213 24 H -0.192 1.192 25 C -0.001 4.001 26 H 0.117 0.883 27 H 0.121 0.879 28 H 0.132 0.868 29 H 0.091 0.909 30 H 0.103 0.897 31 H 0.099 0.901 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.255 0.745 36 H 0.089 0.911 37 H 0.173 0.827 38 H 0.117 0.883 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.071 0.929 43 H 0.062 0.938 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.449 -6.203 -17.640 21.420 hybrid contribution 0.648 -0.371 1.659 1.819 sum -9.801 -6.574 -15.981 19.866 Atomic orbital electron populations 1.24031 0.96177 1.02425 1.01079 1.23044 0.96210 0.98740 0.99951 1.20648 0.97890 0.95817 0.98247 1.21704 0.98386 0.95750 0.99991 1.21730 0.91346 0.99662 0.88019 1.45869 1.38565 1.18467 1.31017 1.19931 0.81794 0.83666 0.84513 1.90273 1.67644 1.34685 1.47345 1.20523 0.82740 0.83027 0.87026 1.90728 1.71041 1.37390 1.44763 1.48468 1.36602 1.25127 1.20406 1.23325 1.05693 0.87174 0.90915 1.21823 0.98918 0.96890 0.98211 1.21562 0.98734 0.98677 0.95476 1.18910 0.95045 0.91001 0.93097 0.99384 1.21461 1.18070 1.15789 1.02123 0.91883 1.25896 0.97068 0.94795 1.01139 1.70040 1.35435 1.19047 1.30907 0.85577 0.79428 0.77874 0.78597 1.19433 1.21283 1.19209 1.21949 0.91553 1.02185 0.84422 0.88325 0.87904 0.86781 0.90918 0.89718 0.90052 0.90988 0.90905 0.90043 0.74527 0.91096 0.82750 0.88332 0.93585 0.92788 0.92405 0.92921 0.93801 0.89704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.25 14.32 67.78 0.97 -1.28 16 2 C -0.16 -1.83 9.52 25.65 0.24 -1.58 16 3 C -0.09 -0.94 5.66 29.85 0.17 -0.77 16 4 C -0.12 -1.48 5.31 30.59 0.16 -1.32 16 5 C 0.11 1.95 5.67 86.38 0.49 2.44 16 6 N -0.69 -16.58 5.55 -464.39 -2.58 -19.16 16 7 C 0.52 16.74 7.78 87.27 0.68 17.42 16 8 O -0.52 -16.97 13.10 -3.25 -0.04 -17.01 16 9 C 0.48 20.02 7.74 87.27 0.68 20.70 16 10 O -0.56 -26.51 15.95 -3.27 -0.05 -26.56 16 11 N -0.57 -24.56 2.97 -820.48 -2.44 -27.00 16 12 C 0.05 1.70 6.27 86.36 0.54 2.24 16 13 C -0.12 -4.13 6.08 30.67 0.19 -3.95 16 14 C -0.11 -4.38 5.11 30.62 0.16 -4.22 16 15 C 0.04 2.00 2.25 -11.46 -0.03 1.97 16 16 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 17 C -0.54 -29.71 8.57 25.60 0.22 -29.50 16 18 H 0.06 3.36 7.74 -2.91 -0.02 3.33 16 19 C 0.01 0.59 5.30 84.65 0.45 1.04 16 20 N -0.92 -55.03 11.38 21.45 0.24 -54.79 16 21 Si 0.96 44.06 29.54 68.60 2.03 46.09 16 22 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 23 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 24 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 25 C 0.12 6.12 5.38 86.36 0.46 6.59 16 26 H 0.10 1.04 7.84 -2.91 -0.02 1.02 16 27 H 0.10 0.99 8.06 -2.91 -0.02 0.97 16 28 H 0.11 1.15 8.06 -2.91 -0.02 1.12 16 29 H 0.07 0.76 7.79 -2.39 -0.02 0.74 16 30 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 32 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 34 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 35 H 0.42 9.61 7.96 -92.71 -0.74 8.87 16 36 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.16 5.09 3.78 -78.73 -0.30 4.79 16 38 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 39 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 40 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 41 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 42 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 43 H 0.04 2.20 8.14 -2.39 -0.02 2.18 16 44 H 0.08 5.01 5.17 -2.39 -0.01 5.00 16 Total: -1.00 -68.20 357.18 2.50 -65.70 By element: Atomic # 1 Polarization: 23.01 SS G_CDS: -0.04 Total: 22.96 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: 5.38 Total: 9.78 kcal Atomic # 7 Polarization: -96.18 SS G_CDS: -4.77 Total: -100.95 kcal Atomic # 8 Polarization: -43.48 SS G_CDS: -0.09 Total: -43.58 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -68.20 2.50 -65.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118637523.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.780 kcal (2) G-P(sol) polarization free energy of solvation -68.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds