Wall clock time and date at job start Tue Mar 31 2020 07:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50700 * 120.00065 * 2 1 4 4 C 1.52997 * 109.47317 * 94.99702 * 3 2 1 5 5 C 1.50693 * 120.00017 * 179.97438 * 2 1 3 6 6 N 1.46502 * 109.47256 * 95.00099 * 5 2 1 7 7 C 1.34782 * 120.00166 * 180.02562 * 6 5 2 8 8 O 1.21350 * 119.99528 * 359.97438 * 7 6 5 9 9 C 1.49446 * 120.00084 * 179.97438 * 7 6 5 10 10 O 1.21356 * 119.99803 * 353.37756 * 9 7 6 11 11 N 1.34768 * 120.00057 * 173.37736 * 9 7 6 12 12 C 1.46923 * 120.63140 * 353.06161 * 11 9 7 13 13 C 1.53197 * 108.77603 * 126.41596 * 12 11 9 14 14 C 1.53036 * 109.34037 * 54.62030 * 13 12 11 15 15 C 1.53043 * 109.53781 * 298.68543 * 14 13 12 16 16 H 1.09000 * 109.49772 * 301.34791 * 15 14 13 17 17 C 1.50699 * 109.49861 * 181.28187 * 15 14 13 18 18 H 1.08009 * 119.99826 * 0.06421 * 17 15 14 19 19 C 1.37874 * 120.00391 * 180.34183 * 17 15 14 20 20 N 1.31511 * 119.99935 * 359.72505 * 19 17 15 21 21 Si 1.86803 * 120.00371 * 179.72468 * 19 17 15 22 22 H 1.48501 * 109.46987 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47049 * 119.99668 * 21 19 17 24 24 H 1.48495 * 109.47162 * 239.99991 * 21 19 17 25 25 C 1.46927 * 120.63303 * 173.08900 * 11 9 7 26 26 H 1.08009 * 119.99909 * 0.02562 * 1 2 3 27 27 H 1.07997 * 120.00327 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47110 * 215.00200 * 3 2 1 29 29 H 1.09001 * 109.46922 * 335.00181 * 3 2 1 30 30 H 1.09001 * 109.47437 * 300.00298 * 4 3 2 31 31 H 1.09001 * 109.46733 * 60.00364 * 4 3 2 32 32 H 1.09003 * 109.47287 * 179.97438 * 4 3 2 33 33 H 1.09007 * 109.47437 * 334.99886 * 5 2 1 34 34 H 1.09010 * 109.47462 * 214.99908 * 5 2 1 35 35 H 0.96996 * 120.00059 * 359.97438 * 6 5 2 36 36 H 1.08998 * 109.59171 * 246.19792 * 12 11 9 37 37 H 1.09003 * 109.58922 * 6.48999 * 12 11 9 38 38 H 1.08995 * 109.50150 * 174.58993 * 13 12 11 39 39 H 1.09009 * 109.49617 * 294.68452 * 13 12 11 40 40 H 1.08997 * 109.49188 * 178.64856 * 14 13 12 41 41 H 1.09001 * 109.43006 * 58.68768 * 14 13 12 42 42 H 0.97000 * 120.00590 * 180.02562 * 20 19 17 43 43 H 1.09003 * 109.59192 * 113.79627 * 25 11 9 44 44 H 1.08998 * 109.70190 * 353.44355 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.4273 1.6840 1.4370 5 6 2.0634 -1.3050 0.0006 6 7 2.4119 -1.6684 -1.3752 7 6 3.0926 -2.8056 -1.6201 8 8 3.4172 -3.5283 -0.7009 9 6 3.4476 -3.1765 -3.0236 10 8 3.0214 -2.5199 -3.9510 11 7 4.2409 -4.2402 -3.2594 12 6 4.8869 -4.9530 -2.1489 13 6 4.5443 -6.4425 -2.2533 14 6 4.9340 -6.9561 -3.6412 15 6 4.1386 -6.2008 -4.7085 16 1 3.0718 -6.3416 -4.5347 17 6 4.4998 -6.7290 -6.0729 18 1 5.2237 -7.5248 -6.1696 19 6 3.9107 -6.1925 -7.1980 20 7 3.0294 -5.2236 -7.0803 21 14 4.3642 -6.8420 -8.8898 22 1 5.3721 -7.9238 -8.7509 23 1 3.1502 -7.3784 -9.5559 24 1 4.9315 -5.7398 -9.7074 25 6 4.4767 -4.7086 -4.6319 26 1 -0.5400 0.9354 -0.0004 27 1 -0.5400 -0.9352 0.0004 28 1 2.9742 1.1988 -0.5895 29 1 1.4385 2.0854 -0.4343 30 1 1.5166 1.7902 2.0265 31 1 3.0523 0.9036 1.8713 32 1 2.9727 2.6277 1.4369 33 1 1.4385 -2.0853 0.4353 34 1 2.9742 -1.1986 0.5900 35 1 2.1521 -1.0909 -2.1100 36 1 5.9673 -4.8216 -2.2095 37 1 4.5233 -4.5579 -1.2003 38 1 5.0943 -6.9966 -1.4927 39 1 3.4737 -6.5810 -2.1020 40 1 4.7134 -8.0213 -3.7100 41 1 6.0001 -6.7952 -3.8012 42 1 2.6145 -4.8463 -7.8718 43 1 5.5236 -4.5572 -4.8950 44 1 3.8423 -4.1543 -5.3235 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118716407.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:43 Heat of formation + Delta-G solvation = -50.373975 kcal Electronic energy + Delta-G solvation = -24060.371528 eV Core-core repulsion = 20592.293798 eV Total energy + Delta-G solvation = -3468.077730 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.50643 -38.46917 -37.15721 -36.77790 -34.11304 -33.15650 -31.70990 -30.75186 -29.72734 -27.34166 -25.36234 -24.91123 -23.86212 -22.36286 -21.77483 -20.28721 -19.20014 -18.41956 -17.22289 -16.59295 -16.16276 -15.85921 -15.45375 -15.27083 -14.93376 -14.54946 -14.35714 -13.90645 -13.72943 -13.45858 -13.20321 -13.10583 -12.78832 -12.58911 -12.51834 -12.17430 -12.03119 -11.77539 -11.39387 -11.20832 -11.06602 -10.99487 -10.67621 -10.44161 -10.27530 -10.04589 -9.87996 -9.64067 -9.25863 -9.18214 -9.10858 -8.50520 -8.40251 -7.81264 -6.01809 -4.09866 1.68828 1.80523 2.90466 3.29681 3.37871 3.41304 3.66065 4.04667 4.37588 4.42168 4.47215 4.74203 4.91096 5.06724 5.20269 5.28846 5.30831 5.45885 5.52545 5.63917 5.65892 5.69318 5.70947 5.88197 5.91018 6.08126 6.23295 6.27265 6.40578 6.46615 6.61476 6.63791 6.76658 6.88135 7.00594 7.06474 7.19247 7.26774 7.60238 7.83937 7.96034 8.00963 8.17900 8.36021 8.59120 8.94472 9.55714 11.03812 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.024165 B = 0.003443 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.418993 B = 8131.271609 C = 8898.345331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.147 4.147 3 C -0.091 4.091 4 C -0.147 4.147 5 C 0.153 3.847 6 N -0.700 5.700 7 C 0.511 3.489 8 O -0.515 6.515 9 C 0.495 3.505 10 O -0.525 6.525 11 N -0.567 5.567 12 C 0.050 3.950 13 C -0.127 4.127 14 C -0.113 4.113 15 C 0.040 3.960 16 H 0.029 0.971 17 C -0.518 4.518 18 H 0.060 0.940 19 C 0.061 3.939 20 N -0.883 5.883 21 Si 0.893 3.107 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 C 0.108 3.892 26 H 0.103 0.897 27 H 0.102 0.898 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.414 0.586 36 H 0.054 0.946 37 H 0.144 0.856 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.050 0.950 41 H 0.049 0.951 42 H 0.263 0.737 43 H 0.048 0.952 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.837 11.008 15.855 19.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.147 4.147 3 C -0.128 4.128 4 C -0.204 4.204 5 C 0.031 3.969 6 N -0.353 5.353 7 C 0.294 3.706 8 O -0.393 6.393 9 C 0.276 3.724 10 O -0.402 6.402 11 N -0.298 5.298 12 C -0.072 4.072 13 C -0.165 4.165 14 C -0.151 4.151 15 C 0.021 3.979 16 H 0.047 0.953 17 C -0.556 4.556 18 H 0.078 0.922 19 C -0.141 4.141 20 N -0.520 5.520 21 Si 0.721 3.279 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.210 1.210 25 C -0.012 4.012 26 H 0.122 0.878 27 H 0.121 0.879 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.250 0.750 36 H 0.072 0.928 37 H 0.160 0.840 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.066 0.934 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.921 10.946 15.895 19.394 hybrid contribution 0.095 -0.163 -1.350 1.363 sum -1.826 10.782 14.545 18.197 Atomic orbital electron populations 1.23926 0.95119 1.02499 0.98132 1.21773 0.95456 0.95135 1.02347 1.20624 1.00314 0.93990 0.97901 1.21734 1.01543 1.01329 0.95802 1.20375 0.99629 0.93726 0.83210 1.45887 1.56199 1.23515 1.09704 1.20818 0.78121 0.81139 0.90509 1.90300 1.52652 1.49703 1.46647 1.19746 0.81607 0.82891 0.88190 1.90759 1.53631 1.51255 1.44571 1.48433 1.43756 1.27114 1.10529 1.23081 0.97115 0.93480 0.93511 1.21853 1.01198 0.95096 0.98398 1.21667 0.99940 0.99575 0.93924 1.18979 0.95861 0.89785 0.93268 0.95268 1.21138 1.24807 1.19371 0.90324 0.92192 1.25064 0.94759 0.94934 0.99358 1.69879 1.27362 1.25302 1.29500 0.86512 0.78309 0.78834 0.84218 1.19769 1.21001 1.20960 1.22482 1.00785 0.99232 0.78657 0.87837 0.87937 0.90961 0.91067 0.92618 0.92458 0.92449 0.90514 0.90474 0.74970 0.92759 0.84004 0.92288 0.92357 0.93074 0.93253 0.92697 0.93404 0.85889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.22 13.88 29.02 0.40 -0.82 16 2 C -0.15 -1.24 4.67 -101.07 -0.47 -1.71 16 3 C -0.09 -0.67 6.10 -27.88 -0.17 -0.84 16 4 C -0.15 -0.96 9.89 37.16 0.37 -0.59 16 5 C 0.15 1.59 5.83 -5.20 -0.03 1.56 16 6 N -0.70 -9.22 5.54 -61.90 -0.34 -9.56 16 7 C 0.51 8.54 7.78 -11.58 -0.09 8.45 16 8 O -0.52 -8.90 13.10 5.50 0.07 -8.82 16 9 C 0.49 10.13 7.74 -11.59 -0.09 10.04 16 10 O -0.52 -12.08 15.95 5.49 0.09 -11.99 16 11 N -0.57 -12.01 2.97 -173.27 -0.51 -12.52 16 12 C 0.05 0.90 6.27 -3.71 -0.02 0.88 16 13 C -0.13 -2.30 6.08 -26.61 -0.16 -2.47 16 14 C -0.11 -2.37 5.11 -26.69 -0.14 -2.50 16 15 C 0.04 1.01 2.25 -91.65 -0.21 0.80 16 16 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 17 C -0.52 -14.11 8.57 -34.44 -0.30 -14.41 16 18 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 19 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 20 N -0.88 -25.56 11.38 55.43 0.63 -24.93 16 21 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 22 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 C 0.11 2.66 5.38 -3.71 -0.02 2.64 16 26 H 0.10 0.66 7.99 -52.48 -0.42 0.24 16 27 H 0.10 0.79 7.99 -52.49 -0.42 0.37 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.48 7.99 -51.93 -0.41 0.06 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.08 0.81 7.99 -51.93 -0.41 0.40 16 34 H 0.08 0.79 8.14 -51.92 -0.42 0.36 16 35 H 0.41 5.28 7.95 -40.82 -0.32 4.96 16 36 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.14 2.50 3.78 -56.75 -0.21 2.28 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.06 1.10 8.14 -51.92 -0.42 0.68 16 40 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 43 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 44 H 0.12 3.46 5.17 -51.93 -0.27 3.19 16 LS Contribution 357.28 15.07 5.38 5.38 Total: -1.00 -30.43 357.28 -7.81 -38.24 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -7.09 Total: 5.33 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: -1.02 Total: 2.64 kcal Atomic # 7 Polarization: -46.78 SS G_CDS: -0.23 Total: -47.01 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: 0.16 Total: -20.81 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.43 -7.81 -38.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118716407.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.132 kcal (2) G-P(sol) polarization free energy of solvation -30.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds