Wall clock time and date at job start Tue Mar 31 2020 07:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50700 * 120.00065 * 2 1 4 4 C 1.52997 * 109.47317 * 94.99702 * 3 2 1 5 5 C 1.50693 * 120.00017 * 179.97438 * 2 1 3 6 6 N 1.46502 * 109.47256 * 95.00099 * 5 2 1 7 7 C 1.34782 * 120.00166 * 180.02562 * 6 5 2 8 8 O 1.21350 * 119.99528 * 359.97438 * 7 6 5 9 9 C 1.49446 * 120.00084 * 179.97438 * 7 6 5 10 10 O 1.21356 * 119.99803 * 353.37756 * 9 7 6 11 11 N 1.34768 * 120.00057 * 173.37736 * 9 7 6 12 12 C 1.46923 * 120.63140 * 353.06161 * 11 9 7 13 13 C 1.53197 * 108.77603 * 126.41596 * 12 11 9 14 14 C 1.53036 * 109.34037 * 54.62030 * 13 12 11 15 15 C 1.53043 * 109.53781 * 298.68543 * 14 13 12 16 16 H 1.09000 * 109.49772 * 301.34791 * 15 14 13 17 17 C 1.50699 * 109.49861 * 181.28187 * 15 14 13 18 18 H 1.08009 * 119.99826 * 0.06421 * 17 15 14 19 19 C 1.37874 * 120.00391 * 180.34183 * 17 15 14 20 20 N 1.31511 * 119.99935 * 359.72505 * 19 17 15 21 21 Si 1.86803 * 120.00371 * 179.72468 * 19 17 15 22 22 H 1.48501 * 109.46987 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47049 * 119.99668 * 21 19 17 24 24 H 1.48495 * 109.47162 * 239.99991 * 21 19 17 25 25 C 1.46927 * 120.63303 * 173.08900 * 11 9 7 26 26 H 1.08009 * 119.99909 * 0.02562 * 1 2 3 27 27 H 1.07997 * 120.00327 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47110 * 215.00200 * 3 2 1 29 29 H 1.09001 * 109.46922 * 335.00181 * 3 2 1 30 30 H 1.09001 * 109.47437 * 300.00298 * 4 3 2 31 31 H 1.09001 * 109.46733 * 60.00364 * 4 3 2 32 32 H 1.09003 * 109.47287 * 179.97438 * 4 3 2 33 33 H 1.09007 * 109.47437 * 334.99886 * 5 2 1 34 34 H 1.09010 * 109.47462 * 214.99908 * 5 2 1 35 35 H 0.96996 * 120.00059 * 359.97438 * 6 5 2 36 36 H 1.08998 * 109.59171 * 246.19792 * 12 11 9 37 37 H 1.09003 * 109.58922 * 6.48999 * 12 11 9 38 38 H 1.08995 * 109.50150 * 174.58993 * 13 12 11 39 39 H 1.09009 * 109.49617 * 294.68452 * 13 12 11 40 40 H 1.08997 * 109.49188 * 178.64856 * 14 13 12 41 41 H 1.09001 * 109.43006 * 58.68768 * 14 13 12 42 42 H 0.97000 * 120.00590 * 180.02562 * 20 19 17 43 43 H 1.09003 * 109.59192 * 113.79627 * 25 11 9 44 44 H 1.08998 * 109.70190 * 353.44355 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.4273 1.6840 1.4370 5 6 2.0634 -1.3050 0.0006 6 7 2.4119 -1.6684 -1.3752 7 6 3.0926 -2.8056 -1.6201 8 8 3.4172 -3.5283 -0.7009 9 6 3.4476 -3.1765 -3.0236 10 8 3.0214 -2.5199 -3.9510 11 7 4.2409 -4.2402 -3.2594 12 6 4.8869 -4.9530 -2.1489 13 6 4.5443 -6.4425 -2.2533 14 6 4.9340 -6.9561 -3.6412 15 6 4.1386 -6.2008 -4.7085 16 1 3.0718 -6.3416 -4.5347 17 6 4.4998 -6.7290 -6.0729 18 1 5.2237 -7.5248 -6.1696 19 6 3.9107 -6.1925 -7.1980 20 7 3.0294 -5.2236 -7.0803 21 14 4.3642 -6.8420 -8.8898 22 1 5.3721 -7.9238 -8.7509 23 1 3.1502 -7.3784 -9.5559 24 1 4.9315 -5.7398 -9.7074 25 6 4.4767 -4.7086 -4.6319 26 1 -0.5400 0.9354 -0.0004 27 1 -0.5400 -0.9352 0.0004 28 1 2.9742 1.1988 -0.5895 29 1 1.4385 2.0854 -0.4343 30 1 1.5166 1.7902 2.0265 31 1 3.0523 0.9036 1.8713 32 1 2.9727 2.6277 1.4369 33 1 1.4385 -2.0853 0.4353 34 1 2.9742 -1.1986 0.5900 35 1 2.1521 -1.0909 -2.1100 36 1 5.9673 -4.8216 -2.2095 37 1 4.5233 -4.5579 -1.2003 38 1 5.0943 -6.9966 -1.4927 39 1 3.4737 -6.5810 -2.1020 40 1 4.7134 -8.0213 -3.7100 41 1 6.0001 -6.7952 -3.8012 42 1 2.6145 -4.8463 -7.8718 43 1 5.5236 -4.5572 -4.8950 44 1 3.8423 -4.1543 -5.3235 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118716407.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:42 Heat of formation + Delta-G solvation = -69.714689 kcal Electronic energy + Delta-G solvation = -24061.210204 eV Core-core repulsion = 20592.293798 eV Total energy + Delta-G solvation = -3468.916406 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.96381 -39.91104 -38.55122 -37.98113 -35.45773 -34.80657 -33.44873 -31.57375 -31.38930 -28.50422 -27.16062 -26.51038 -24.43264 -23.86599 -23.47709 -21.70287 -20.67204 -19.55903 -18.72034 -18.18798 -17.87010 -17.12415 -16.80491 -16.50088 -16.31568 -15.98521 -15.50866 -15.36141 -15.17132 -14.76544 -14.58920 -14.45966 -14.03750 -13.90063 -13.71644 -13.45243 -13.24347 -13.02761 -12.90661 -12.77445 -12.46187 -12.30700 -12.17099 -11.75664 -11.74031 -11.69912 -11.58546 -11.16354 -10.99052 -10.56256 -10.40019 -10.31706 -9.91777 -9.55326 -8.12788 -6.29233 0.33708 0.90549 1.40305 1.42239 1.54219 1.63168 2.14139 2.41270 2.66156 3.15688 3.32910 3.67163 3.84337 4.15482 4.18820 4.32644 4.34646 4.48592 4.51297 4.56952 4.62040 4.72246 4.76952 4.81045 4.81560 4.94792 5.05385 5.11255 5.14936 5.16319 5.23610 5.27029 5.38636 5.39763 5.51748 5.56509 5.61405 5.82592 5.83580 5.93261 5.99611 6.29186 6.44055 6.72659 6.82906 6.97452 7.40678 8.91482 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.024165 B = 0.003443 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.418993 B = 8131.271609 C = 8898.345331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.156 4.156 3 C -0.090 4.090 4 C -0.145 4.145 5 C 0.152 3.848 6 N -0.682 5.682 7 C 0.520 3.480 8 O -0.520 6.520 9 C 0.485 3.515 10 O -0.559 6.559 11 N -0.574 5.574 12 C 0.049 3.951 13 C -0.120 4.120 14 C -0.107 4.107 15 C 0.039 3.961 16 H -0.011 1.011 17 C -0.534 4.534 18 H 0.063 0.937 19 C 0.010 3.990 20 N -0.915 5.915 21 Si 0.960 3.040 22 H -0.262 1.262 23 H -0.282 1.282 24 H -0.281 1.281 25 C 0.121 3.879 26 H 0.121 0.879 27 H 0.102 0.898 28 H 0.063 0.937 29 H 0.080 0.920 30 H 0.060 0.940 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.416 0.584 36 H 0.071 0.929 37 H 0.156 0.844 38 H 0.098 0.902 39 H 0.045 0.955 40 H 0.053 0.947 41 H 0.057 0.943 42 H 0.261 0.739 43 H 0.044 0.956 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.340 11.215 17.393 20.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.157 4.157 3 C -0.127 4.127 4 C -0.202 4.202 5 C 0.031 3.969 6 N -0.334 5.334 7 C 0.302 3.698 8 O -0.399 6.399 9 C 0.268 3.732 10 O -0.439 6.439 11 N -0.305 5.305 12 C -0.071 4.071 13 C -0.158 4.158 14 C -0.145 4.145 15 C 0.019 3.981 16 H 0.007 0.993 17 C -0.573 4.573 18 H 0.081 0.919 19 C -0.189 4.189 20 N -0.554 5.554 21 Si 0.786 3.214 22 H -0.186 1.186 23 H -0.208 1.208 24 H -0.207 1.207 25 C 0.000 4.000 26 H 0.139 0.861 27 H 0.120 0.880 28 H 0.082 0.918 29 H 0.098 0.902 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.253 0.747 36 H 0.089 0.911 37 H 0.172 0.828 38 H 0.117 0.883 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.062 0.938 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.424 11.160 17.478 20.786 hybrid contribution -0.130 -0.181 -1.790 1.804 sum -1.554 10.979 15.688 19.211 Atomic orbital electron populations 1.24115 0.94911 1.03350 0.96328 1.21708 0.95648 0.94546 1.03788 1.20631 0.99988 0.93678 0.98419 1.21727 1.01800 1.01497 0.95212 1.20577 1.00269 0.94902 0.81175 1.45909 1.54323 1.21904 1.11286 1.19967 0.79190 0.82335 0.88330 1.90275 1.53546 1.50205 1.45835 1.20479 0.80669 0.82185 0.89880 1.90730 1.54617 1.52313 1.46230 1.48463 1.44348 1.27737 1.09982 1.23326 0.97931 0.93174 0.92699 1.21821 1.01012 0.95411 0.97575 1.21565 0.99553 0.99154 0.94206 1.18915 0.94070 0.90858 0.94219 0.99318 1.21515 1.24704 1.19428 0.91612 0.91908 1.25892 0.94652 0.95083 1.03275 1.70054 1.28502 1.26546 1.30290 0.85469 0.78140 0.78396 0.79439 1.18616 1.20799 1.20686 1.21947 0.99409 0.98449 0.80243 0.86123 0.88018 0.91796 0.90158 0.92101 0.92885 0.91788 0.90328 0.89845 0.74677 0.91072 0.82785 0.88329 0.93572 0.92775 0.92405 0.92951 0.93786 0.89740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 13.88 67.78 0.94 -1.03 16 2 C -0.16 -2.35 4.67 -16.49 -0.08 -2.43 16 3 C -0.09 -1.17 6.10 29.85 0.18 -0.99 16 4 C -0.15 -1.62 9.89 71.98 0.71 -0.90 16 5 C 0.15 2.92 5.83 85.63 0.50 3.42 16 6 N -0.68 -17.35 5.54 -468.12 -2.59 -19.95 16 7 C 0.52 17.04 7.78 87.27 0.68 17.72 16 8 O -0.52 -17.14 13.10 -3.25 -0.04 -17.18 16 9 C 0.49 20.22 7.74 87.27 0.68 20.90 16 10 O -0.56 -26.73 15.95 -3.27 -0.05 -26.78 16 11 N -0.57 -24.60 2.97 -820.48 -2.44 -27.04 16 12 C 0.05 1.70 6.27 86.36 0.54 2.24 16 13 C -0.12 -4.13 6.08 30.67 0.19 -3.95 16 14 C -0.11 -4.39 5.11 30.62 0.16 -4.23 16 15 C 0.04 1.99 2.25 -11.46 -0.03 1.97 16 16 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 17 C -0.53 -29.61 8.57 25.60 0.22 -29.40 16 18 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 19 C 0.01 0.58 5.30 84.65 0.45 1.03 16 20 N -0.92 -54.94 11.38 21.45 0.24 -54.70 16 21 Si 0.96 44.13 29.54 68.60 2.03 46.16 16 22 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 23 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 24 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 25 C 0.12 6.15 5.38 86.36 0.46 6.62 16 26 H 0.12 1.20 7.99 -2.91 -0.02 1.18 16 27 H 0.10 1.37 7.99 -2.91 -0.02 1.35 16 28 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.08 0.90 7.99 -2.39 -0.02 0.88 16 30 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.08 1.52 7.99 -2.38 -0.02 1.50 16 34 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 35 H 0.42 10.41 7.95 -92.71 -0.74 9.68 16 36 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.16 5.10 3.78 -78.73 -0.30 4.81 16 38 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 39 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 40 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 42 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 43 H 0.04 2.21 8.14 -2.39 -0.02 2.19 16 44 H 0.08 5.00 5.17 -2.39 -0.01 4.98 16 Total: -1.00 -67.48 357.28 2.71 -64.77 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: -0.04 Total: 23.75 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: 5.60 Total: 10.97 kcal Atomic # 7 Polarization: -96.90 SS G_CDS: -4.79 Total: -101.69 kcal Atomic # 8 Polarization: -43.86 SS G_CDS: -0.09 Total: -43.96 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -67.48 2.71 -64.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118716407.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.942 kcal (2) G-P(sol) polarization free energy of solvation -67.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds