Wall clock time and date at job start Tue Mar 31 2020 07:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50700 * 119.99624 * 2 1 4 4 C 1.52997 * 109.47340 * 95.00675 * 3 2 1 5 5 C 1.50699 * 120.00094 * 180.02562 * 2 1 3 6 6 N 1.46509 * 109.46826 * 94.99476 * 5 2 1 7 7 C 1.34775 * 119.99567 * 179.97438 * 6 5 2 8 8 O 1.21352 * 120.00141 * 359.97438 * 7 6 5 9 9 C 1.49448 * 119.99800 * 180.02562 * 7 6 5 10 10 O 1.21344 * 120.00308 * 353.23338 * 9 7 6 11 11 N 1.34784 * 120.00133 * 173.23049 * 9 7 6 12 12 C 1.46929 * 120.62828 * 351.35143 * 11 9 7 13 13 C 1.53191 * 108.89438 * 233.55930 * 12 11 9 14 14 C 1.53070 * 109.29330 * 305.58156 * 13 12 11 15 15 C 1.53040 * 109.66092 * 61.15257 * 14 13 12 16 16 H 1.09000 * 109.49788 * 58.65045 * 15 14 13 17 17 C 1.50699 * 109.49627 * 178.74544 * 15 14 13 18 18 H 1.08001 * 120.00061 * 359.84110 * 17 15 14 19 19 C 1.37881 * 120.00047 * 179.83697 * 17 15 14 20 20 N 1.31515 * 119.99629 * 0.02562 * 19 17 15 21 21 Si 1.86793 * 120.00410 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.47073 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46960 * 119.99945 * 21 19 17 24 24 H 1.48496 * 109.47429 * 240.00188 * 21 19 17 25 25 C 1.46924 * 120.63092 * 171.37996 * 11 9 7 26 26 H 1.08002 * 120.00141 * 359.97438 * 1 2 3 27 27 H 1.08007 * 120.00057 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47298 * 215.00392 * 3 2 1 29 29 H 1.08995 * 109.47842 * 335.00015 * 3 2 1 30 30 H 1.09005 * 109.46694 * 300.00087 * 4 3 2 31 31 H 1.09004 * 109.47247 * 59.99087 * 4 3 2 32 32 H 1.08992 * 109.47901 * 179.97438 * 4 3 2 33 33 H 1.08994 * 109.47039 * 335.00318 * 5 2 1 34 34 H 1.08993 * 109.47124 * 214.99544 * 5 2 1 35 35 H 0.96995 * 120.00297 * 0.02562 * 6 5 2 36 36 H 1.09001 * 109.58364 * 353.42154 * 12 11 9 37 37 H 1.08998 * 109.58185 * 113.69820 * 12 11 9 38 38 H 1.09001 * 109.49476 * 65.38778 * 13 12 11 39 39 H 1.08999 * 109.49901 * 185.48778 * 13 12 11 40 40 H 1.09002 * 109.35068 * 301.12365 * 14 13 12 41 41 H 1.09002 * 109.44049 * 181.23616 * 14 13 12 42 42 H 0.96998 * 120.00184 * 179.97438 * 20 19 17 43 43 H 1.09006 * 109.57806 * 246.15416 * 25 11 9 44 44 H 1.09000 * 109.58866 * 6.43300 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.4274 1.6839 1.4369 5 6 2.0635 -1.3051 -0.0006 6 7 2.4118 -1.6672 -1.3768 7 6 3.0933 -2.8036 -1.6226 8 8 3.4189 -3.5267 -0.7040 9 6 3.4492 -3.1728 -3.0264 10 8 3.0209 -2.5172 -3.9533 11 7 4.2458 -4.2340 -3.2629 12 6 4.9240 -4.9223 -2.1561 13 6 6.4241 -4.9905 -2.4591 14 6 6.6342 -5.6391 -3.8296 15 6 5.9581 -4.7914 -4.9096 16 1 6.3758 -3.7847 -4.8964 17 6 6.1933 -5.4167 -6.2604 18 1 6.7698 -6.3263 -6.3414 19 6 5.6725 -4.8274 -7.3929 20 7 4.9708 -3.7195 -7.2943 21 14 5.9646 -5.6020 -9.0674 22 1 6.7787 -6.8338 -8.9078 23 1 4.6602 -5.9482 -9.6870 24 1 6.6867 -4.6403 -9.9385 25 6 4.4530 -4.7240 -4.6324 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9354 0.0004 28 1 2.9741 1.1990 -0.5895 29 1 1.4385 2.0855 -0.4343 30 1 1.5167 1.7901 2.0265 31 1 3.0523 0.9035 1.8712 32 1 2.9727 2.6276 1.4370 33 1 1.4385 -2.0856 0.4333 34 1 2.9741 -1.1991 0.5888 35 1 2.1525 -1.0887 -2.1110 36 1 4.7630 -4.3710 -1.2296 37 1 4.5254 -5.9317 -2.0546 38 1 6.8396 -3.9828 -2.4681 39 1 6.9234 -5.5836 -1.6930 40 1 6.1988 -6.6384 -3.8268 41 1 7.7018 -5.7089 -4.0381 42 1 4.6047 -3.3047 -8.0911 43 1 4.0178 -5.7182 -4.7344 44 1 3.9791 -4.0433 -5.3397 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118716409.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:46 Heat of formation + Delta-G solvation = -53.865578 kcal Electronic energy + Delta-G solvation = -24053.438971 eV Core-core repulsion = 20585.209835 eV Total energy + Delta-G solvation = -3468.229137 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.47543 -38.47730 -37.13185 -36.77401 -34.09017 -33.16403 -31.72488 -30.74071 -29.75326 -27.32909 -25.36032 -24.91154 -23.84778 -22.36123 -21.79114 -20.21498 -19.24006 -18.43622 -17.13760 -16.61797 -16.20115 -15.87505 -15.44853 -15.21672 -14.98771 -14.50598 -14.31204 -13.92692 -13.62906 -13.40936 -13.23809 -12.98932 -12.89498 -12.60258 -12.48283 -12.17199 -12.08491 -11.80489 -11.39647 -11.18962 -11.05862 -10.99040 -10.67932 -10.44162 -10.29908 -10.10921 -9.87270 -9.64670 -9.23528 -9.18557 -9.10672 -8.55995 -8.44464 -7.80724 -6.00918 -4.09484 1.68911 1.82093 2.90925 3.29778 3.38028 3.41392 3.65191 4.04682 4.38048 4.42427 4.47993 4.75484 4.92710 5.08521 5.21240 5.29090 5.31399 5.46101 5.52678 5.61813 5.66593 5.67290 5.70488 5.86752 5.92259 6.10214 6.23186 6.25201 6.37725 6.46579 6.54303 6.61259 6.72373 6.86017 6.99402 7.04428 7.19161 7.27810 7.60136 7.83591 7.95190 7.98662 8.17663 8.36300 8.59608 8.94828 9.56099 11.04348 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.022824 B = 0.003467 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.507097 B = 8074.968843 C = 8772.264689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.145 4.145 3 C -0.092 4.092 4 C -0.147 4.147 5 C 0.154 3.846 6 N -0.701 5.701 7 C 0.509 3.491 8 O -0.519 6.519 9 C 0.494 3.506 10 O -0.521 6.521 11 N -0.569 5.569 12 C 0.072 3.928 13 C -0.133 4.133 14 C -0.112 4.112 15 C 0.041 3.959 16 H 0.030 0.970 17 C -0.519 4.519 18 H 0.060 0.940 19 C 0.061 3.939 20 N -0.881 5.881 21 Si 0.893 3.107 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 C 0.108 3.892 26 H 0.103 0.897 27 H 0.102 0.898 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.414 0.586 36 H 0.126 0.874 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.049 0.951 41 H 0.051 0.949 42 H 0.263 0.737 43 H 0.048 0.952 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.509 7.238 16.216 18.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.145 4.145 3 C -0.129 4.129 4 C -0.204 4.204 5 C 0.031 3.969 6 N -0.354 5.354 7 C 0.292 3.708 8 O -0.397 6.397 9 C 0.275 3.725 10 O -0.398 6.398 11 N -0.301 5.301 12 C -0.051 4.051 13 C -0.172 4.172 14 C -0.150 4.150 15 C 0.022 3.978 16 H 0.048 0.952 17 C -0.557 4.557 18 H 0.078 0.922 19 C -0.141 4.141 20 N -0.519 5.519 21 Si 0.721 3.279 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.210 1.210 25 C -0.012 4.012 26 H 0.122 0.878 27 H 0.120 0.880 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.250 0.750 36 H 0.143 0.857 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.066 0.934 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.589 7.180 16.256 18.953 hybrid contribution -0.011 -0.209 -1.290 1.307 sum -6.600 6.971 14.966 17.780 Atomic orbital electron populations 1.23907 0.95104 1.02435 0.98395 1.21785 0.95451 0.95178 1.02118 1.20631 1.00385 0.93959 0.97936 1.21731 1.01514 1.01375 0.95772 1.20364 0.99612 0.93673 0.83253 1.45878 1.56283 1.23617 1.09662 1.20785 0.78263 0.81272 0.90522 1.90471 1.52080 1.50420 1.46691 1.19809 0.81833 0.82654 0.88239 1.90774 1.53937 1.50455 1.44591 1.48430 1.42711 1.28232 1.10760 1.22674 0.92243 0.98433 0.91710 1.21965 0.95513 1.01038 0.98650 1.21661 1.00325 0.99156 0.93878 1.18958 0.90226 0.95914 0.92729 0.95205 1.21130 1.33805 1.10254 0.90552 0.92215 1.25068 0.94986 0.94800 0.99265 1.69895 1.34568 1.18195 1.29199 0.86522 0.77960 0.79311 0.84139 1.19778 1.20979 1.21004 1.22480 1.01066 0.99052 0.78558 0.87844 0.88013 0.90876 0.91049 0.92652 0.92456 0.92411 0.90599 0.90489 0.74976 0.85735 0.92207 0.92460 0.92088 0.93188 0.93058 0.92711 0.93360 0.85829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.22 13.88 29.02 0.40 -0.82 16 2 C -0.14 -1.24 4.67 -101.07 -0.47 -1.71 16 3 C -0.09 -0.71 6.10 -27.88 -0.17 -0.88 16 4 C -0.15 -1.00 9.89 37.16 0.37 -0.63 16 5 C 0.15 1.61 5.84 -5.19 -0.03 1.58 16 6 N -0.70 -9.30 5.54 -61.91 -0.34 -9.64 16 7 C 0.51 8.50 7.74 -11.59 -0.09 8.41 16 8 O -0.52 -8.96 13.18 5.50 0.07 -8.89 16 9 C 0.49 10.10 7.73 -11.58 -0.09 10.01 16 10 O -0.52 -12.05 15.93 5.50 0.09 -11.96 16 11 N -0.57 -12.01 2.97 -173.28 -0.52 -12.52 16 12 C 0.07 1.29 5.98 -3.71 -0.02 1.27 16 13 C -0.13 -2.36 6.09 -26.60 -0.16 -2.52 16 14 C -0.11 -2.32 5.10 -26.67 -0.14 -2.46 16 15 C 0.04 1.02 2.25 -91.66 -0.21 0.81 16 16 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 17 C -0.52 -14.08 8.56 -34.44 -0.29 -14.37 16 18 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 19 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 20 N -0.88 -25.46 11.39 55.43 0.63 -24.83 16 21 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 22 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 C 0.11 2.64 5.41 -3.72 -0.02 2.62 16 26 H 0.10 0.65 7.99 -52.49 -0.42 0.23 16 27 H 0.10 0.76 7.99 -52.48 -0.42 0.34 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.50 7.99 -51.93 -0.41 0.08 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.08 0.79 7.99 -51.93 -0.41 0.38 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.41 5.36 7.95 -40.82 -0.32 5.03 16 36 H 0.13 2.18 4.31 -54.78 -0.24 1.94 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 41 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 43 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.12 3.46 5.13 -51.93 -0.27 3.19 16 LS Contribution 357.54 15.07 5.39 5.39 Total: -1.00 -30.35 357.54 -7.83 -38.18 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -7.11 Total: 5.19 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: -1.02 Total: 2.92 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: -0.23 Total: -46.99 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: 0.16 Total: -20.86 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.35 -7.83 -38.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118716409.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.685 kcal (2) G-P(sol) polarization free energy of solvation -30.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds