Wall clock time and date at job start Tue Mar 31 2020 07:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50700 * 119.99624 * 2 1 4 4 C 1.52997 * 109.47340 * 95.00675 * 3 2 1 5 5 C 1.50699 * 120.00094 * 180.02562 * 2 1 3 6 6 N 1.46509 * 109.46826 * 94.99476 * 5 2 1 7 7 C 1.34775 * 119.99567 * 179.97438 * 6 5 2 8 8 O 1.21352 * 120.00141 * 359.97438 * 7 6 5 9 9 C 1.49448 * 119.99800 * 180.02562 * 7 6 5 10 10 O 1.21344 * 120.00308 * 353.23338 * 9 7 6 11 11 N 1.34784 * 120.00133 * 173.23049 * 9 7 6 12 12 C 1.46929 * 120.62828 * 351.35143 * 11 9 7 13 13 C 1.53191 * 108.89438 * 233.55930 * 12 11 9 14 14 C 1.53070 * 109.29330 * 305.58156 * 13 12 11 15 15 C 1.53040 * 109.66092 * 61.15257 * 14 13 12 16 16 H 1.09000 * 109.49788 * 58.65045 * 15 14 13 17 17 C 1.50699 * 109.49627 * 178.74544 * 15 14 13 18 18 H 1.08001 * 120.00061 * 359.84110 * 17 15 14 19 19 C 1.37881 * 120.00047 * 179.83697 * 17 15 14 20 20 N 1.31515 * 119.99629 * 0.02562 * 19 17 15 21 21 Si 1.86793 * 120.00410 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.47073 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46960 * 119.99945 * 21 19 17 24 24 H 1.48496 * 109.47429 * 240.00188 * 21 19 17 25 25 C 1.46924 * 120.63092 * 171.37996 * 11 9 7 26 26 H 1.08002 * 120.00141 * 359.97438 * 1 2 3 27 27 H 1.08007 * 120.00057 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47298 * 215.00392 * 3 2 1 29 29 H 1.08995 * 109.47842 * 335.00015 * 3 2 1 30 30 H 1.09005 * 109.46694 * 300.00087 * 4 3 2 31 31 H 1.09004 * 109.47247 * 59.99087 * 4 3 2 32 32 H 1.08992 * 109.47901 * 179.97438 * 4 3 2 33 33 H 1.08994 * 109.47039 * 335.00318 * 5 2 1 34 34 H 1.08993 * 109.47124 * 214.99544 * 5 2 1 35 35 H 0.96995 * 120.00297 * 0.02562 * 6 5 2 36 36 H 1.09001 * 109.58364 * 353.42154 * 12 11 9 37 37 H 1.08998 * 109.58185 * 113.69820 * 12 11 9 38 38 H 1.09001 * 109.49476 * 65.38778 * 13 12 11 39 39 H 1.08999 * 109.49901 * 185.48778 * 13 12 11 40 40 H 1.09002 * 109.35068 * 301.12365 * 14 13 12 41 41 H 1.09002 * 109.44049 * 181.23616 * 14 13 12 42 42 H 0.96998 * 120.00184 * 179.97438 * 20 19 17 43 43 H 1.09006 * 109.57806 * 246.15416 * 25 11 9 44 44 H 1.09000 * 109.58866 * 6.43300 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.4274 1.6839 1.4369 5 6 2.0635 -1.3051 -0.0006 6 7 2.4118 -1.6672 -1.3768 7 6 3.0933 -2.8036 -1.6226 8 8 3.4189 -3.5267 -0.7040 9 6 3.4492 -3.1728 -3.0264 10 8 3.0209 -2.5172 -3.9533 11 7 4.2458 -4.2340 -3.2629 12 6 4.9240 -4.9223 -2.1561 13 6 6.4241 -4.9905 -2.4591 14 6 6.6342 -5.6391 -3.8296 15 6 5.9581 -4.7914 -4.9096 16 1 6.3758 -3.7847 -4.8964 17 6 6.1933 -5.4167 -6.2604 18 1 6.7698 -6.3263 -6.3414 19 6 5.6725 -4.8274 -7.3929 20 7 4.9708 -3.7195 -7.2943 21 14 5.9646 -5.6020 -9.0674 22 1 6.7787 -6.8338 -8.9078 23 1 4.6602 -5.9482 -9.6870 24 1 6.6867 -4.6403 -9.9385 25 6 4.4530 -4.7240 -4.6324 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9354 0.0004 28 1 2.9741 1.1990 -0.5895 29 1 1.4385 2.0855 -0.4343 30 1 1.5167 1.7901 2.0265 31 1 3.0523 0.9035 1.8712 32 1 2.9727 2.6276 1.4370 33 1 1.4385 -2.0856 0.4333 34 1 2.9741 -1.1991 0.5888 35 1 2.1525 -1.0887 -2.1110 36 1 4.7630 -4.3710 -1.2296 37 1 4.5254 -5.9317 -2.0546 38 1 6.8396 -3.9828 -2.4681 39 1 6.9234 -5.5836 -1.6930 40 1 6.1988 -6.6384 -3.8268 41 1 7.7018 -5.7089 -4.0381 42 1 4.6047 -3.3047 -8.0911 43 1 4.0178 -5.7182 -4.7344 44 1 3.9791 -4.0433 -5.3397 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118716409.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:45 Heat of formation + Delta-G solvation = -73.068658 kcal Electronic energy + Delta-G solvation = -24054.271679 eV Core-core repulsion = 20585.209835 eV Total energy + Delta-G solvation = -3469.061845 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.93344 -39.91387 -38.52219 -37.97610 -35.44325 -34.80456 -33.44862 -31.59174 -31.39036 -28.48982 -27.15113 -26.50746 -24.43777 -23.86037 -23.47438 -21.63713 -20.71046 -19.53912 -18.66587 -18.19691 -17.87743 -17.16695 -16.83847 -16.43331 -16.26914 -16.00048 -15.50352 -15.37030 -14.97292 -14.79508 -14.63766 -14.40612 -14.01784 -13.94464 -13.75115 -13.48869 -13.23775 -13.01020 -12.89512 -12.77713 -12.47165 -12.29668 -12.15268 -11.77418 -11.76125 -11.69128 -11.60093 -11.14049 -10.98691 -10.55351 -10.44396 -10.30378 -9.98674 -9.54666 -8.11320 -6.28173 0.35432 0.91072 1.40627 1.42666 1.54525 1.63318 2.13602 2.41916 2.66532 3.16725 3.34720 3.67258 3.84114 4.12535 4.17458 4.32407 4.33897 4.48356 4.50645 4.58596 4.61617 4.71320 4.76506 4.80275 4.83746 4.94771 5.06076 5.10948 5.14217 5.15681 5.23119 5.25704 5.34020 5.38673 5.48546 5.57318 5.61147 5.82622 5.84443 5.94130 6.00374 6.30233 6.42893 6.71724 6.83918 6.98285 7.41720 8.92569 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.022824 B = 0.003467 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.507097 B = 8074.968843 C = 8772.264689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.157 4.157 3 C -0.091 4.091 4 C -0.145 4.145 5 C 0.153 3.847 6 N -0.685 5.685 7 C 0.519 3.481 8 O -0.523 6.523 9 C 0.485 3.515 10 O -0.557 6.557 11 N -0.576 5.576 12 C 0.071 3.929 13 C -0.126 4.126 14 C -0.107 4.107 15 C 0.039 3.961 16 H -0.011 1.011 17 C -0.535 4.535 18 H 0.062 0.938 19 C 0.011 3.989 20 N -0.914 5.914 21 Si 0.959 3.041 22 H -0.262 1.262 23 H -0.281 1.281 24 H -0.282 1.282 25 C 0.121 3.879 26 H 0.120 0.880 27 H 0.104 0.896 28 H 0.060 0.940 29 H 0.080 0.920 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.416 0.584 36 H 0.138 0.862 37 H 0.073 0.927 38 H 0.048 0.952 39 H 0.101 0.899 40 H 0.057 0.943 41 H 0.054 0.946 42 H 0.261 0.739 43 H 0.045 0.955 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.748 6.850 17.879 20.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.158 4.158 3 C -0.128 4.128 4 C -0.202 4.202 5 C 0.032 3.968 6 N -0.337 5.337 7 C 0.300 3.700 8 O -0.402 6.402 9 C 0.267 3.733 10 O -0.436 6.436 11 N -0.308 5.308 12 C -0.049 4.049 13 C -0.164 4.164 14 C -0.144 4.144 15 C 0.020 3.980 16 H 0.008 0.992 17 C -0.573 4.573 18 H 0.081 0.919 19 C -0.189 4.189 20 N -0.552 5.552 21 Si 0.785 3.215 22 H -0.186 1.186 23 H -0.207 1.207 24 H -0.208 1.208 25 C -0.001 4.001 26 H 0.138 0.862 27 H 0.122 0.878 28 H 0.079 0.921 29 H 0.099 0.901 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.252 0.748 36 H 0.155 0.845 37 H 0.091 0.909 38 H 0.067 0.933 39 H 0.120 0.880 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.063 0.937 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.826 6.797 17.966 20.385 hybrid contribution 0.009 -0.031 -1.773 1.773 sum -6.818 6.766 16.192 18.827 Atomic orbital electron populations 1.24111 0.94779 1.03418 0.96201 1.21697 0.95713 0.94460 1.03904 1.20634 0.99947 0.93862 0.98402 1.21723 1.01828 1.01450 0.95208 1.20560 1.00152 0.94952 0.81170 1.45913 1.54459 1.22045 1.11240 1.19933 0.79281 0.82450 0.88333 1.90453 1.52932 1.50921 1.45879 1.20543 0.80944 0.81879 0.89900 1.90746 1.55075 1.51525 1.46302 1.48461 1.43301 1.28790 1.10236 1.22902 0.92180 0.99014 0.90844 1.21937 0.95586 1.00990 0.97854 1.21556 0.99954 0.98782 0.94131 1.18894 0.90832 0.94407 0.93867 0.99247 1.21513 1.33588 1.10325 0.91885 0.91933 1.25889 0.94719 0.95201 1.03085 1.70072 1.35590 1.19645 1.29928 0.85483 0.77890 0.78670 0.79484 1.18630 1.20723 1.20832 1.21953 1.00268 0.97811 0.80059 0.86167 0.87764 0.92083 0.90134 0.91952 0.92938 0.91885 0.90068 0.90205 0.74757 0.84520 0.90859 0.93315 0.88039 0.92409 0.92714 0.92987 0.93665 0.89672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 13.88 67.79 0.94 -0.94 16 2 C -0.16 -2.39 4.67 -16.48 -0.08 -2.47 16 3 C -0.09 -1.27 6.10 29.85 0.18 -1.09 16 4 C -0.14 -1.73 9.89 71.98 0.71 -1.01 16 5 C 0.15 2.96 5.84 85.63 0.50 3.46 16 6 N -0.68 -17.57 5.54 -468.14 -2.59 -20.16 16 7 C 0.52 16.98 7.74 87.27 0.68 17.65 16 8 O -0.52 -17.20 13.18 -3.25 -0.04 -17.24 16 9 C 0.48 20.19 7.73 87.27 0.67 20.87 16 10 O -0.56 -26.86 15.93 -3.23 -0.05 -26.91 16 11 N -0.58 -24.60 2.97 -820.49 -2.44 -27.04 16 12 C 0.07 2.46 5.98 86.36 0.52 2.98 16 13 C -0.13 -4.20 6.09 30.68 0.19 -4.02 16 14 C -0.11 -4.31 5.10 30.63 0.16 -4.15 16 15 C 0.04 2.01 2.25 -11.47 -0.03 1.98 16 16 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 17 C -0.53 -29.52 8.56 25.60 0.22 -29.30 16 18 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 19 C 0.01 0.59 5.30 84.66 0.45 1.04 16 20 N -0.91 -54.80 11.39 21.45 0.24 -54.56 16 21 Si 0.96 44.04 29.54 68.60 2.03 46.07 16 22 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 23 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 24 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 25 C 0.12 6.09 5.41 86.36 0.47 6.56 16 26 H 0.12 1.16 7.99 -2.91 -0.02 1.13 16 27 H 0.10 1.30 7.99 -2.91 -0.02 1.27 16 28 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 29 H 0.08 0.97 7.99 -2.39 -0.02 0.95 16 30 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 31 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 32 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.08 1.53 7.99 -2.39 -0.02 1.51 16 34 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.42 10.59 7.95 -92.71 -0.74 9.86 16 36 H 0.14 4.49 4.31 -47.53 -0.21 4.29 16 37 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 38 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 40 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 41 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 42 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 43 H 0.05 2.25 8.14 -2.38 -0.02 2.23 16 44 H 0.09 5.01 5.13 -2.39 -0.01 5.00 16 Total: -1.00 -67.40 357.54 2.77 -64.63 By element: Atomic # 1 Polarization: 23.60 SS G_CDS: 0.06 Total: 23.65 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: 5.58 Total: 11.56 kcal Atomic # 7 Polarization: -96.97 SS G_CDS: -4.79 Total: -101.76 kcal Atomic # 8 Polarization: -44.06 SS G_CDS: -0.09 Total: -44.15 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -67.40 2.77 -64.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118716409.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.438 kcal (2) G-P(sol) polarization free energy of solvation -67.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds