Wall clock time and date at job start Tue Mar 31 2020 07:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50700 * 120.00150 * 2 1 4 4 C 1.50701 * 119.99979 * 179.97438 * 2 1 3 5 5 N 1.46507 * 109.46622 * 95.00155 * 4 2 1 6 6 C 1.46505 * 119.99787 * 90.00713 * 5 4 2 7 7 C 1.34770 * 120.00012 * 270.00008 * 5 4 2 8 8 O 1.21350 * 120.00330 * 5.04715 * 7 5 4 9 9 C 1.49452 * 120.00177 * 185.04843 * 7 5 4 10 10 O 1.21353 * 119.99908 * 85.32347 * 9 7 5 11 11 N 1.34776 * 120.00058 * 265.33176 * 9 7 5 12 12 C 1.46925 * 120.62922 * 354.97934 * 11 9 7 13 13 C 1.53192 * 108.77569 * 233.58518 * 12 11 9 14 14 C 1.53033 * 109.31394 * 305.36509 * 13 12 11 15 15 C 1.53047 * 109.53772 * 61.36231 * 14 13 12 16 16 H 1.08994 * 109.49880 * 58.59009 * 15 14 13 17 17 C 1.50703 * 109.49388 * 178.68753 * 15 14 13 18 18 H 1.08001 * 120.00211 * 359.97438 * 17 15 14 19 19 C 1.37875 * 119.99674 * 180.02562 * 17 15 14 20 20 N 1.31522 * 120.00173 * 359.97438 * 19 17 15 21 21 Si 1.86803 * 120.00086 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.46973 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47291 * 120.00091 * 21 19 17 24 24 H 1.48502 * 109.47036 * 239.99760 * 21 19 17 25 25 C 1.46920 * 120.63163 * 174.69705 * 11 9 7 26 26 H 1.08004 * 120.00027 * 0.02562 * 1 2 3 27 27 H 1.08002 * 120.00141 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47349 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47410 * 299.99947 * 3 2 1 30 30 H 1.09004 * 109.47355 * 60.00471 * 3 2 1 31 31 H 1.09000 * 109.47344 * 335.00476 * 4 2 1 32 32 H 1.08997 * 109.47247 * 214.99981 * 4 2 1 33 33 H 1.08997 * 109.47434 * 85.22778 * 6 5 4 34 34 H 1.09001 * 109.46726 * 205.23326 * 6 5 4 35 35 H 1.09005 * 109.46887 * 325.22697 * 6 5 4 36 36 H 1.09009 * 109.58797 * 353.37006 * 12 11 9 37 37 H 1.08994 * 109.59140 * 113.65284 * 12 11 9 38 38 H 1.09005 * 109.49845 * 65.31493 * 13 12 11 39 39 H 1.08997 * 109.49857 * 185.41085 * 13 12 11 40 40 H 1.08998 * 109.46542 * 181.38363 * 14 13 12 41 41 H 1.09000 * 109.46107 * 301.35873 * 14 13 12 42 42 H 0.96998 * 120.00095 * 180.02562 * 20 19 17 43 43 H 1.09002 * 109.58553 * 246.20018 * 25 11 9 44 44 H 1.08996 * 109.58839 * 6.62637 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0634 -1.3051 0.0006 5 7 2.4119 -1.6683 -1.3753 6 6 3.6807 -1.2180 -1.9528 7 6 1.5652 -2.4168 -2.1097 8 8 0.4755 -2.7129 -1.6651 9 6 1.9682 -2.8822 -3.4715 10 8 2.6142 -3.9017 -3.5978 11 7 1.6143 -2.1695 -4.5593 12 6 0.7410 -0.9947 -4.4330 13 6 -0.4488 -1.1602 -5.3836 14 6 0.0677 -1.4097 -6.8023 15 6 0.8899 -2.7004 -6.8281 16 1 0.2708 -3.5329 -6.4940 17 6 1.3711 -2.9621 -8.2320 18 1 1.1159 -2.2770 -9.0270 19 6 2.1362 -4.0769 -8.5019 20 7 2.4466 -4.9115 -7.5339 21 14 2.7321 -4.4019 -10.2422 22 1 2.2502 -3.3219 -11.1402 23 1 4.2167 -4.4348 -10.2591 24 1 2.2028 -5.7078 -10.7109 25 6 2.0994 -2.5489 -5.8932 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 3.1352 1.1059 0.0005 29 1 1.8002 1.8767 -0.8900 30 1 1.8002 1.8767 0.8900 31 1 1.4385 -2.0853 0.4352 32 1 2.9741 -1.1986 0.5900 33 1 4.4716 -1.9177 -1.6825 34 1 3.5904 -1.1734 -3.0382 35 1 3.9242 -0.2279 -1.5675 36 1 0.3809 -0.9156 -3.4071 37 1 1.2982 -0.0952 -4.6949 38 1 -1.0554 -2.0073 -5.0631 39 1 -1.0536 -0.2535 -5.3708 40 1 -0.7767 -1.5035 -7.4851 41 1 0.6946 -0.5739 -7.1128 42 1 2.9852 -5.6956 -7.7237 43 1 2.7645 -1.7738 -6.2742 44 1 2.6360 -3.4956 -5.8312 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118743439.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:30 Heat of formation + Delta-G solvation = -51.079238 kcal Electronic energy + Delta-G solvation = -25005.067877 eV Core-core repulsion = 21536.959565 eV Total energy + Delta-G solvation = -3468.108312 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.57580 -38.61024 -36.80723 -36.48770 -34.38510 -33.39992 -31.85118 -29.87763 -28.33755 -27.28910 -26.77323 -25.18327 -24.92091 -22.28561 -21.85524 -19.65058 -18.75696 -18.26895 -17.49265 -16.72320 -16.21959 -16.09996 -15.36290 -14.76689 -14.55299 -14.46052 -14.07016 -13.83528 -13.74703 -13.43465 -13.21937 -13.06710 -12.78987 -12.66235 -12.59604 -12.21727 -11.97178 -11.93981 -11.71334 -11.39964 -11.05008 -11.01051 -10.93340 -10.51936 -10.40790 -10.27037 -9.95085 -9.47194 -9.17689 -9.16076 -8.86834 -8.79280 -8.47883 -7.90900 -6.02212 -4.11358 1.87472 2.40947 2.69543 3.05834 3.28980 3.37392 3.40242 3.75568 4.40382 4.48795 4.64571 4.75252 4.99244 5.11628 5.26292 5.29027 5.32757 5.34014 5.40511 5.46286 5.59162 5.61358 5.65120 5.74942 5.83335 5.93667 6.15835 6.27345 6.28067 6.46125 6.53603 6.61346 6.66356 6.79425 6.92781 7.01249 7.10165 7.12342 7.55801 7.81260 7.90706 7.94853 8.05716 8.31983 8.51322 8.93082 9.54609 11.03199 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.025692 B = 0.004207 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.586093 B = 6653.727978 C = 7080.052292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.159 4.159 3 C -0.114 4.114 4 C 0.150 3.850 5 N -0.600 5.600 6 C 0.075 3.925 7 C 0.518 3.482 8 O -0.516 6.516 9 C 0.506 3.494 10 O -0.509 6.509 11 N -0.588 5.588 12 C 0.108 3.892 13 C -0.132 4.132 14 C -0.110 4.110 15 C 0.039 3.961 16 H 0.032 0.968 17 C -0.520 4.520 18 H 0.060 0.940 19 C 0.062 3.938 20 N -0.880 5.880 21 Si 0.893 3.107 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 C 0.111 3.889 26 H 0.097 0.903 27 H 0.106 0.894 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.053 0.947 41 H 0.050 0.950 42 H 0.264 0.736 43 H 0.049 0.951 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.738 13.219 14.029 19.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.160 4.160 3 C -0.171 4.171 4 C 0.029 3.971 5 N -0.336 5.336 6 C -0.068 4.068 7 C 0.301 3.699 8 O -0.390 6.390 9 C 0.287 3.713 10 O -0.384 6.384 11 N -0.322 5.322 12 C -0.015 4.015 13 C -0.170 4.170 14 C -0.148 4.148 15 C 0.019 3.981 16 H 0.050 0.950 17 C -0.559 4.559 18 H 0.078 0.922 19 C -0.140 4.140 20 N -0.518 5.518 21 Si 0.720 3.280 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.210 1.210 25 C -0.009 4.009 26 H 0.115 0.885 27 H 0.124 0.876 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.107 0.893 32 H 0.103 0.897 33 H 0.082 0.918 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.068 0.932 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 0.628 12.309 14.208 18.809 hybrid contribution 0.328 -0.150 -0.915 0.984 sum 0.956 12.159 13.293 18.040 Atomic orbital electron populations 1.23888 0.95420 1.02349 0.98348 1.22024 0.95789 0.95731 1.02447 1.20824 0.99728 0.94611 1.01951 1.20522 0.99896 0.94473 0.82259 1.47891 1.20290 1.51352 1.14020 1.21913 0.84847 1.00184 0.99846 1.20807 0.84394 0.77503 0.87163 1.90738 1.20701 1.55542 1.72015 1.19988 0.81255 0.85153 0.84875 1.90831 1.39248 1.23048 1.85225 1.48611 1.47406 1.27713 1.08467 1.21690 0.92024 0.88025 0.99768 1.21920 0.96600 1.01316 0.97206 1.21634 0.99649 1.00093 0.93413 1.19068 0.92057 0.92236 0.94691 0.95033 1.21109 1.33179 1.08379 0.93219 0.92198 1.25068 0.96019 0.95873 0.97089 1.69901 1.37401 1.13127 1.31339 0.86528 0.78485 0.78194 0.84755 1.19772 1.20969 1.20995 1.22541 0.99122 1.02469 0.76738 0.88511 0.87585 0.92168 0.91682 0.91691 0.89252 0.89685 0.91791 0.90545 0.90583 0.91328 0.91623 0.91823 0.91998 0.92781 0.93086 0.92638 0.93234 0.85817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 13.92 29.02 0.40 -1.29 16 2 C -0.16 -1.56 5.63 -101.06 -0.57 -2.13 16 3 C -0.11 -0.85 10.02 36.01 0.36 -0.49 16 4 C 0.15 1.62 5.47 -5.19 -0.03 1.59 16 5 N -0.60 -8.04 2.86 -183.46 -0.52 -8.57 16 6 C 0.07 0.82 10.29 59.85 0.62 1.44 16 7 C 0.52 9.24 5.57 -11.59 -0.06 9.17 16 8 O -0.52 -10.19 16.18 5.50 0.09 -10.10 16 9 C 0.51 10.63 5.62 -11.58 -0.07 10.56 16 10 O -0.51 -12.65 16.52 5.49 0.09 -12.56 16 11 N -0.59 -11.87 2.95 -173.01 -0.51 -12.38 16 12 C 0.11 1.78 6.32 -3.71 -0.02 1.76 16 13 C -0.13 -2.24 6.08 -26.61 -0.16 -2.40 16 14 C -0.11 -2.18 5.10 -26.69 -0.14 -2.31 16 15 C 0.04 0.95 2.26 -91.42 -0.21 0.74 16 16 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 17 C -0.52 -13.88 8.56 -34.44 -0.29 -14.17 16 18 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 19 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 20 N -0.88 -25.45 11.41 55.43 0.63 -24.81 16 21 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 22 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 C 0.11 2.61 5.44 -3.49 -0.02 2.59 16 26 H 0.10 0.86 8.05 -52.48 -0.42 0.44 16 27 H 0.11 1.29 7.65 -52.49 -0.40 0.89 16 28 H 0.06 0.39 7.27 -51.93 -0.38 0.01 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.09 1.07 7.34 -51.93 -0.38 0.69 16 32 H 0.08 0.69 8.07 -51.93 -0.42 0.27 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.97 6.79 -51.93 -0.35 0.62 16 35 H 0.08 0.59 7.34 -51.93 -0.38 0.21 16 36 H 0.07 1.08 6.23 -51.92 -0.32 0.76 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 43 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 44 H 0.12 3.41 5.14 -51.93 -0.27 3.15 16 LS Contribution 357.71 15.07 5.39 5.39 Total: -1.00 -32.09 357.71 -7.23 -39.32 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -7.09 Total: 1.10 kcal Atomic # 6 Polarization: 6.94 SS G_CDS: -0.28 Total: 6.66 kcal Atomic # 7 Polarization: -45.36 SS G_CDS: -0.40 Total: -45.76 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: 0.18 Total: -22.66 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.09 -7.23 -39.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118743439.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.757 kcal (2) G-P(sol) polarization free energy of solvation -32.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds