Wall clock time and date at job start Tue Mar 31 2020 07:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50700 * 120.00150 * 2 1 4 4 C 1.50701 * 119.99979 * 179.97438 * 2 1 3 5 5 N 1.46507 * 109.46622 * 95.00155 * 4 2 1 6 6 C 1.46505 * 119.99787 * 90.00713 * 5 4 2 7 7 C 1.34770 * 120.00012 * 270.00008 * 5 4 2 8 8 O 1.21350 * 120.00330 * 5.04715 * 7 5 4 9 9 C 1.49452 * 120.00177 * 185.04843 * 7 5 4 10 10 O 1.21353 * 119.99908 * 85.32347 * 9 7 5 11 11 N 1.34776 * 120.00058 * 265.33176 * 9 7 5 12 12 C 1.46925 * 120.62922 * 354.97934 * 11 9 7 13 13 C 1.53192 * 108.77569 * 233.58518 * 12 11 9 14 14 C 1.53033 * 109.31394 * 305.36509 * 13 12 11 15 15 C 1.53047 * 109.53772 * 61.36231 * 14 13 12 16 16 H 1.08994 * 109.49880 * 58.59009 * 15 14 13 17 17 C 1.50703 * 109.49388 * 178.68753 * 15 14 13 18 18 H 1.08001 * 120.00211 * 359.97438 * 17 15 14 19 19 C 1.37875 * 119.99674 * 180.02562 * 17 15 14 20 20 N 1.31522 * 120.00173 * 359.97438 * 19 17 15 21 21 Si 1.86803 * 120.00086 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.46973 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47291 * 120.00091 * 21 19 17 24 24 H 1.48502 * 109.47036 * 239.99760 * 21 19 17 25 25 C 1.46920 * 120.63163 * 174.69705 * 11 9 7 26 26 H 1.08004 * 120.00027 * 0.02562 * 1 2 3 27 27 H 1.08002 * 120.00141 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47349 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47410 * 299.99947 * 3 2 1 30 30 H 1.09004 * 109.47355 * 60.00471 * 3 2 1 31 31 H 1.09000 * 109.47344 * 335.00476 * 4 2 1 32 32 H 1.08997 * 109.47247 * 214.99981 * 4 2 1 33 33 H 1.08997 * 109.47434 * 85.22778 * 6 5 4 34 34 H 1.09001 * 109.46726 * 205.23326 * 6 5 4 35 35 H 1.09005 * 109.46887 * 325.22697 * 6 5 4 36 36 H 1.09009 * 109.58797 * 353.37006 * 12 11 9 37 37 H 1.08994 * 109.59140 * 113.65284 * 12 11 9 38 38 H 1.09005 * 109.49845 * 65.31493 * 13 12 11 39 39 H 1.08997 * 109.49857 * 185.41085 * 13 12 11 40 40 H 1.08998 * 109.46542 * 181.38363 * 14 13 12 41 41 H 1.09000 * 109.46107 * 301.35873 * 14 13 12 42 42 H 0.96998 * 120.00095 * 180.02562 * 20 19 17 43 43 H 1.09002 * 109.58553 * 246.20018 * 25 11 9 44 44 H 1.08996 * 109.58839 * 6.62637 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0634 -1.3051 0.0006 5 7 2.4119 -1.6683 -1.3753 6 6 3.6807 -1.2180 -1.9528 7 6 1.5652 -2.4168 -2.1097 8 8 0.4755 -2.7129 -1.6651 9 6 1.9682 -2.8822 -3.4715 10 8 2.6142 -3.9017 -3.5978 11 7 1.6143 -2.1695 -4.5593 12 6 0.7410 -0.9947 -4.4330 13 6 -0.4488 -1.1602 -5.3836 14 6 0.0677 -1.4097 -6.8023 15 6 0.8899 -2.7004 -6.8281 16 1 0.2708 -3.5329 -6.4940 17 6 1.3711 -2.9621 -8.2320 18 1 1.1159 -2.2770 -9.0270 19 6 2.1362 -4.0769 -8.5019 20 7 2.4466 -4.9115 -7.5339 21 14 2.7321 -4.4019 -10.2422 22 1 2.2502 -3.3219 -11.1402 23 1 4.2167 -4.4348 -10.2591 24 1 2.2028 -5.7078 -10.7109 25 6 2.0994 -2.5489 -5.8932 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 3.1352 1.1059 0.0005 29 1 1.8002 1.8767 -0.8900 30 1 1.8002 1.8767 0.8900 31 1 1.4385 -2.0853 0.4352 32 1 2.9741 -1.1986 0.5900 33 1 4.4716 -1.9177 -1.6825 34 1 3.5904 -1.1734 -3.0382 35 1 3.9242 -0.2279 -1.5675 36 1 0.3809 -0.9156 -3.4071 37 1 1.2982 -0.0952 -4.6949 38 1 -1.0554 -2.0073 -5.0631 39 1 -1.0536 -0.2535 -5.3708 40 1 -0.7767 -1.5035 -7.4851 41 1 0.6946 -0.5739 -7.1128 42 1 2.9852 -5.6956 -7.7237 43 1 2.7645 -1.7738 -6.2742 44 1 2.6360 -3.4956 -5.8312 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118743439.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:29 Heat of formation + Delta-G solvation = -71.570553 kcal Electronic energy + Delta-G solvation = -25005.956447 eV Core-core repulsion = 21536.959565 eV Total energy + Delta-G solvation = -3468.996882 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.03498 -40.08324 -38.46222 -37.64068 -35.41022 -35.24963 -33.57066 -31.66410 -29.20428 -28.36003 -27.74215 -27.03578 -26.36903 -23.80216 -23.46793 -21.24912 -19.91322 -19.46081 -18.97012 -18.19568 -18.06834 -17.55495 -16.61587 -16.35774 -15.97063 -15.88270 -15.31032 -15.20251 -14.96219 -14.78307 -14.55443 -14.40113 -14.11773 -13.96954 -13.82513 -13.61822 -13.45708 -12.91452 -12.74629 -12.67129 -12.56318 -12.48360 -12.31820 -12.23668 -12.15701 -11.88117 -11.69457 -11.12800 -10.98947 -10.66201 -10.54408 -10.05387 -9.88067 -9.62277 -8.10985 -6.28428 0.88004 0.98716 1.32369 1.41662 1.43566 1.55480 1.63651 2.40052 2.45608 3.12927 3.18601 3.87414 3.89624 3.95055 4.06058 4.11369 4.24321 4.36528 4.49375 4.49753 4.65108 4.69581 4.69833 4.74004 4.76362 4.82081 4.92935 5.02593 5.06920 5.15526 5.20774 5.21814 5.25209 5.28656 5.41854 5.58089 5.69658 5.80895 5.85564 5.94292 6.02036 6.27412 6.32241 6.62993 6.81018 6.88355 7.42317 8.93112 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.025692 B = 0.004207 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.586093 B = 6653.727978 C = 7080.052292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.154 4.154 3 C -0.111 4.111 4 C 0.144 3.856 5 N -0.584 5.584 6 C 0.069 3.931 7 C 0.523 3.477 8 O -0.544 6.544 9 C 0.499 3.501 10 O -0.562 6.562 11 N -0.586 5.586 12 C 0.107 3.893 13 C -0.126 4.126 14 C -0.102 4.102 15 C 0.034 3.966 16 H -0.019 1.019 17 C -0.532 4.532 18 H 0.066 0.934 19 C 0.010 3.990 20 N -0.917 5.917 21 Si 0.960 3.040 22 H -0.259 1.259 23 H -0.280 1.280 24 H -0.287 1.287 25 C 0.124 3.876 26 H 0.114 0.886 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.122 0.878 33 H 0.069 0.931 34 H 0.058 0.942 35 H 0.120 0.880 36 H 0.079 0.921 37 H 0.101 0.899 38 H 0.040 0.960 39 H 0.107 0.893 40 H 0.054 0.946 41 H 0.069 0.931 42 H 0.260 0.740 43 H 0.060 0.940 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.312 16.785 14.527 22.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.155 4.155 3 C -0.168 4.168 4 C 0.023 3.977 5 N -0.317 5.317 6 C -0.073 4.073 7 C 0.305 3.695 8 O -0.421 6.421 9 C 0.282 3.718 10 O -0.440 6.440 11 N -0.319 5.319 12 C -0.015 4.015 13 C -0.164 4.164 14 C -0.140 4.140 15 C 0.015 3.985 16 H -0.001 1.001 17 C -0.570 4.570 18 H 0.085 0.915 19 C -0.189 4.189 20 N -0.556 5.556 21 Si 0.785 3.215 22 H -0.183 1.183 23 H -0.206 1.206 24 H -0.213 1.213 25 C 0.002 3.998 26 H 0.132 0.868 27 H 0.099 0.901 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.140 0.860 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.138 0.862 36 H 0.097 0.903 37 H 0.119 0.881 38 H 0.059 0.941 39 H 0.125 0.875 40 H 0.073 0.927 41 H 0.087 0.913 42 H 0.069 0.931 43 H 0.078 0.922 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.201 15.950 14.726 21.742 hybrid contribution 0.145 -1.251 -1.021 1.621 sum 1.346 14.699 13.705 20.142 Atomic orbital electron populations 1.23911 0.95941 1.02032 0.99278 1.22154 0.95594 0.96253 1.01537 1.20851 1.00232 0.92990 1.02713 1.20822 1.01609 0.94660 0.80593 1.47950 1.19997 1.49203 1.14538 1.22167 0.83564 1.02642 0.98940 1.20161 0.84796 0.78489 0.86021 1.90733 1.21992 1.57217 1.72136 1.20669 0.80313 0.84412 0.86423 1.90791 1.41674 1.25278 1.86272 1.48616 1.47460 1.28627 1.07180 1.21977 0.91598 0.87461 1.00430 1.21895 0.96899 1.02508 0.95131 1.21512 0.99156 0.97771 0.95554 1.19029 0.92363 0.93157 0.93944 1.00099 1.21516 1.32662 1.08408 0.94437 0.91544 1.25909 0.96314 0.95779 1.00927 1.70104 1.38345 1.13613 1.33551 0.85479 0.77899 0.78031 0.80085 1.18266 1.20605 1.21300 1.22022 0.98468 1.00774 0.78489 0.86776 0.90122 0.90623 0.91403 0.90392 0.91028 0.86015 0.91191 0.92340 0.86208 0.90263 0.88121 0.94136 0.87485 0.92728 0.91251 0.93094 0.92165 0.90218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.34 13.92 67.79 0.94 -2.39 16 2 C -0.15 -2.59 5.63 -16.48 -0.09 -2.68 16 3 C -0.11 -1.17 10.02 71.24 0.71 -0.45 16 4 C 0.14 2.76 5.47 85.63 0.47 3.23 16 5 N -0.58 -14.66 2.86 -852.70 -2.44 -17.10 16 6 C 0.07 1.33 10.29 127.77 1.31 2.65 16 7 C 0.52 18.71 5.57 87.27 0.49 19.19 16 8 O -0.54 -21.89 16.18 -3.25 -0.05 -21.95 16 9 C 0.50 21.64 5.62 87.27 0.49 22.13 16 10 O -0.56 -29.63 16.52 -3.26 -0.05 -29.69 16 11 N -0.59 -23.95 2.95 -819.65 -2.42 -26.37 16 12 C 0.11 3.30 6.32 86.36 0.55 3.84 16 13 C -0.13 -4.03 6.08 30.67 0.19 -3.84 16 14 C -0.10 -3.92 5.10 30.62 0.16 -3.76 16 15 C 0.03 1.73 2.26 -11.31 -0.03 1.70 16 16 H -0.02 -1.15 8.14 -2.39 -0.02 -1.17 16 17 C -0.53 -28.78 8.56 25.60 0.22 -28.56 16 18 H 0.07 3.43 7.74 -2.91 -0.02 3.41 16 19 C 0.01 0.56 5.30 84.65 0.45 1.01 16 20 N -0.92 -55.57 11.41 21.45 0.24 -55.32 16 21 Si 0.96 43.64 29.54 68.60 2.03 45.66 16 22 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 23 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 24 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 25 C 0.12 6.01 5.44 86.51 0.47 6.48 16 26 H 0.11 1.75 8.05 -2.91 -0.02 1.73 16 27 H 0.08 1.97 7.65 -2.91 -0.02 1.95 16 28 H 0.07 0.57 7.27 -2.38 -0.02 0.56 16 29 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.08 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.07 1.67 7.34 -2.39 -0.02 1.65 16 32 H 0.12 1.48 8.07 -2.39 -0.02 1.46 16 33 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.06 1.39 6.79 -2.39 -0.02 1.37 16 35 H 0.12 1.30 7.34 -2.38 -0.02 1.28 16 36 H 0.08 2.33 6.23 -2.38 -0.01 2.32 16 37 H 0.10 2.46 8.14 -2.39 -0.02 2.45 16 38 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 39 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 40 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 42 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 43 H 0.06 2.74 8.14 -2.39 -0.02 2.72 16 44 H 0.08 4.66 5.14 -2.39 -0.01 4.65 16 Total: -1.00 -75.59 357.71 4.61 -70.98 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: 0.97 Total: 15.25 kcal Atomic # 6 Polarization: 12.20 SS G_CDS: 6.33 Total: 18.52 kcal Atomic # 7 Polarization: -94.18 SS G_CDS: -4.61 Total: -98.79 kcal Atomic # 8 Polarization: -51.53 SS G_CDS: -0.11 Total: -51.63 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.66 kcal Total: -75.59 4.61 -70.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118743439.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.589 kcal (2) G-P(sol) polarization free energy of solvation -75.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds