Wall clock time and date at job start Tue Mar 31 2020 07:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47129 * 2 1 4 4 C 1.50703 * 109.47381 * 240.00436 * 2 1 3 5 5 H 1.08000 * 119.99786 * 239.99744 * 4 2 1 6 6 C 1.37873 * 119.99903 * 59.99425 * 4 2 1 7 7 N 1.31510 * 120.00265 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99578 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47472 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46661 * 120.00468 * 8 6 4 11 11 H 1.48495 * 109.47010 * 239.99777 * 8 6 4 12 12 C 1.53002 * 109.47450 * 120.00253 * 2 1 3 13 13 N 1.46507 * 109.46540 * 300.00185 * 12 2 1 14 14 C 1.34778 * 119.99650 * 180.02562 * 13 12 2 15 15 O 1.21356 * 120.00055 * 359.97438 * 14 13 12 16 16 C 1.49447 * 120.00261 * 180.02562 * 14 13 12 17 17 O 1.21348 * 119.99850 * 37.17150 * 16 14 13 18 18 N 1.34770 * 120.00196 * 217.18288 * 16 14 13 19 19 C 1.46503 * 119.99923 * 200.30146 * 18 16 14 20 20 C 1.52992 * 117.49786 * 67.89315 * 19 18 16 21 21 C 1.52995 * 117.50095 * 359.26861 * 19 18 16 22 22 C 1.46508 * 120.00103 * 20.29686 * 18 16 14 23 23 C 1.53002 * 117.49556 * 359.81406 * 22 18 16 24 24 C 1.53000 * 117.49780 * 291.19289 * 22 18 16 25 25 H 1.09000 * 109.47164 * 299.99437 * 1 2 3 26 26 H 1.08997 * 109.47340 * 60.00319 * 1 2 3 27 27 H 1.08999 * 109.46646 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46795 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.46750 * 300.00043 * 3 2 1 30 30 H 1.09000 * 109.46638 * 60.00241 * 3 2 1 31 31 H 0.97000 * 120.00085 * 179.97438 * 7 6 4 32 32 H 1.08997 * 109.47344 * 180.02562 * 12 2 1 33 33 H 1.08997 * 109.47395 * 59.99749 * 12 2 1 34 34 H 0.96994 * 120.00204 * 359.97438 * 13 12 2 35 35 H 1.09006 * 115.55663 * 213.57485 * 19 18 16 36 36 H 1.09001 * 117.50178 * 145.02168 * 20 19 18 37 37 H 1.08997 * 117.50555 * 359.97438 * 20 19 18 38 38 H 1.09004 * 117.49802 * 359.97438 * 21 19 18 39 39 H 1.09003 * 117.51641 * 214.96958 * 21 19 18 40 40 H 1.09001 * 115.54671 * 145.51795 * 22 18 16 41 41 H 1.08993 * 117.49989 * 359.97438 * 23 22 18 42 42 H 1.09003 * 117.49666 * 145.02060 * 23 22 18 43 43 H 1.09003 * 117.49350 * 214.97793 * 24 22 18 44 44 H 1.09004 * 117.49807 * 359.97438 * 24 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2392 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3215 -1.1202 -4.0080 9 1 3.1456 -2.2875 -3.6039 10 1 1.1661 -1.5865 -4.8161 11 1 3.1466 -0.1872 -4.8165 12 6 2.0401 -0.7213 1.2492 13 7 1.5516 -0.0307 2.4454 14 6 1.8777 -0.4908 3.6695 15 8 2.5754 -1.4775 3.7808 16 6 1.3791 0.2132 4.8898 17 8 0.2632 0.6900 4.9018 18 7 2.1687 0.3189 5.9768 19 6 1.5763 0.5898 7.2890 20 6 0.7112 -0.5067 7.9135 21 6 0.0573 0.7595 7.3569 22 6 3.6196 0.1627 5.8462 23 6 4.1765 -0.1233 4.4502 24 6 4.1523 -1.2306 5.5058 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 0.7094 1.1618 -3.4844 32 1 3.1300 -0.7209 1.2494 33 1 1.6768 -1.7489 1.2492 34 1 0.9943 0.7581 2.3564 35 1 2.1813 1.1978 7.9617 36 1 0.7469 -0.6201 8.9970 37 1 0.5825 -1.4296 7.3480 38 1 -0.5013 0.6700 6.4252 39 1 -0.3375 1.4791 8.0743 40 1 4.2208 0.7830 6.5110 41 1 3.4635 -0.1957 3.6290 42 1 5.1444 0.3089 4.1962 43 1 5.1044 -1.5268 5.9463 44 1 3.4234 -2.0311 5.3794 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119172088.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:35 Heat of formation + Delta-G solvation = 65.469694 kcal Electronic energy + Delta-G solvation = -24938.746952 eV Core-core repulsion = 21475.692581 eV Total energy + Delta-G solvation = -3463.054371 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.66171 -39.18158 -37.53522 -36.58285 -35.81079 -33.41533 -32.12191 -30.94967 -26.67977 -25.76086 -25.41489 -24.43448 -22.73402 -22.52719 -22.20331 -21.63462 -19.46280 -18.81390 -18.20356 -17.05387 -16.38678 -15.88080 -15.68017 -15.34011 -15.08118 -14.65715 -14.28232 -14.00415 -13.74046 -13.48464 -13.05935 -12.97444 -12.47306 -12.25595 -11.84684 -11.71262 -11.50934 -11.25360 -10.97602 -10.77436 -10.69871 -10.67912 -10.52547 -10.41169 -10.23901 -10.19610 -10.10518 -9.64880 -9.48621 -9.04107 -8.81959 -8.53575 -8.51970 -8.38681 -6.05472 -4.16293 1.58826 2.32020 3.04928 3.25323 3.34201 3.37501 3.46382 3.72783 3.91303 4.35881 4.54775 4.68556 4.78703 4.82700 4.91936 5.01742 5.18213 5.21496 5.25203 5.54885 5.72087 5.85617 5.89404 6.04234 6.06166 6.15232 6.19739 6.38791 6.43498 6.58275 6.65197 6.79738 6.80782 6.89110 6.96484 7.00925 7.29416 7.51417 7.56018 7.66835 7.85643 7.96719 8.07645 8.21566 8.35246 8.84135 9.49983 10.95932 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.028211 B = 0.003837 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.275300 B = 7295.667723 C = 7826.487728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.056 3.944 3 C -0.133 4.133 4 C -0.507 4.507 5 H 0.059 0.941 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.894 3.106 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.126 3.874 13 N -0.683 5.683 14 C 0.492 3.508 15 O -0.510 6.510 16 C 0.511 3.489 17 O -0.502 6.502 18 N -0.542 5.542 19 C 0.073 3.927 20 C -0.195 4.195 21 C -0.192 4.192 22 C 0.054 3.946 23 C -0.224 4.224 24 C -0.165 4.165 25 H 0.009 0.991 26 H 0.087 0.913 27 H 0.028 0.972 28 H 0.028 0.972 29 H 0.087 0.913 30 H 0.007 0.993 31 H 0.260 0.740 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.409 0.591 35 H 0.128 0.872 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.147 0.853 39 H 0.095 0.905 40 H 0.128 0.872 41 H 0.151 0.849 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.806 0.934 17.553 17.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.055 3.945 3 C -0.191 4.191 4 C -0.546 4.546 5 H 0.077 0.923 6 C -0.135 4.135 7 N -0.522 5.522 8 Si 0.722 3.278 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.004 3.996 13 N -0.335 5.335 14 C 0.275 3.725 15 O -0.390 6.390 16 C 0.295 3.705 17 O -0.378 6.378 18 N -0.272 5.272 19 C -0.031 4.031 20 C -0.233 4.233 21 C -0.229 4.229 22 C -0.049 4.049 23 C -0.260 4.260 24 C -0.203 4.203 25 H 0.028 0.972 26 H 0.105 0.895 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.106 0.894 30 H 0.026 0.974 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.246 0.754 35 H 0.145 0.855 36 H 0.118 0.882 37 H 0.112 0.888 38 H 0.164 0.836 39 H 0.114 0.886 40 H 0.145 0.855 41 H 0.168 0.832 42 H 0.106 0.894 43 H 0.105 0.895 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.619 0.626 17.452 17.659 hybrid contribution 0.309 -0.114 -0.687 0.762 sum 2.927 0.512 16.765 17.026 Atomic orbital electron populations 1.21854 0.97528 0.99362 1.00391 1.18386 0.93015 0.92821 0.90252 1.21856 0.98619 0.98256 1.00331 1.20977 1.31663 1.12189 0.89732 0.92283 1.24877 0.94796 0.94898 0.98887 1.69811 1.36506 1.22669 1.23222 0.86509 0.78645 0.79730 0.82960 1.19744 1.21048 1.21049 1.21994 0.98513 0.96226 0.82828 1.46417 1.50421 1.31442 1.05184 1.19643 0.80963 0.86812 0.85092 1.90846 1.35238 1.27002 1.85914 1.20538 0.85475 0.79641 0.84801 1.90513 1.20924 1.44608 1.81706 1.46430 1.05932 1.69041 1.05840 1.21610 0.93370 1.03003 0.85124 1.23465 1.04625 0.94478 1.00769 1.24368 0.93632 0.99029 1.05873 1.21799 0.79437 1.01684 1.02025 1.25214 1.04357 1.02166 0.94301 1.23703 1.02540 0.93016 1.01037 0.97246 0.89458 0.95315 0.95291 0.89409 0.97449 0.92980 0.91815 0.91853 0.75429 0.85492 0.88219 0.88786 0.83578 0.88644 0.85455 0.83230 0.89363 0.89484 0.86028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.00 8.08 37.16 0.30 -2.70 16 2 C 0.06 1.26 0.50 -155.66 -0.08 1.18 16 3 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16 4 C -0.51 -12.87 8.01 -34.44 -0.28 -13.14 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 6 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 7 N -0.88 -23.19 9.35 55.43 0.52 -22.68 16 8 Si 0.89 20.32 29.54 -169.99 -5.02 15.30 16 9 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 12 C 0.13 2.51 4.49 -4.04 -0.02 2.50 16 13 N -0.68 -12.06 4.89 -85.64 -0.42 -12.47 16 14 C 0.49 8.38 4.78 -11.59 -0.06 8.32 16 15 O -0.51 -9.13 10.60 5.49 0.06 -9.08 16 16 C 0.51 8.10 7.20 -11.59 -0.08 8.02 16 17 O -0.50 -8.55 13.52 5.50 0.07 -8.48 16 18 N -0.54 -7.20 3.14 -159.08 -0.50 -7.70 16 19 C 0.07 0.80 6.58 -67.93 -0.45 0.35 16 20 C -0.19 -2.01 10.38 -26.74 -0.28 -2.28 16 21 C -0.19 -2.18 9.50 -26.73 -0.25 -2.43 16 22 C 0.05 0.65 6.59 -67.92 -0.45 0.20 16 23 C -0.22 -3.10 8.91 -26.73 -0.24 -3.34 16 24 C -0.16 -2.10 9.45 -26.73 -0.25 -2.36 16 25 H 0.01 0.18 6.86 -51.93 -0.36 -0.18 16 26 H 0.09 2.17 6.07 -51.93 -0.32 1.86 16 27 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.09 2.16 6.07 -51.93 -0.32 1.84 16 30 H 0.01 0.13 6.86 -51.93 -0.36 -0.23 16 31 H 0.26 6.59 8.31 -40.82 -0.34 6.25 16 32 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 34 H 0.41 7.10 6.05 -40.82 -0.25 6.86 16 35 H 0.13 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.15 2.09 4.77 -53.88 -0.26 1.83 16 39 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.13 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.15 2.45 2.87 -102.53 -0.29 2.16 16 42 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 44 H 0.12 1.83 6.16 -51.93 -0.32 1.51 16 LS Contribution 341.38 15.07 5.14 5.14 Total: -1.00 -26.64 341.38 -8.72 -35.35 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: -6.65 Total: 11.29 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: -1.92 Total: -6.68 kcal Atomic # 7 Polarization: -42.45 SS G_CDS: -0.40 Total: -42.85 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: 0.13 Total: -17.55 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -26.64 -8.72 -35.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119172088.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.821 kcal (2) G-P(sol) polarization free energy of solvation -26.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds