Wall clock time and date at job start Tue Mar 31 2020 07:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47129 * 2 1 4 4 C 1.50703 * 109.47381 * 240.00436 * 2 1 3 5 5 H 1.08000 * 119.99786 * 239.99744 * 4 2 1 6 6 C 1.37873 * 119.99903 * 59.99425 * 4 2 1 7 7 N 1.31510 * 120.00265 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99578 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47472 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46661 * 120.00468 * 8 6 4 11 11 H 1.48495 * 109.47010 * 239.99777 * 8 6 4 12 12 C 1.53002 * 109.47450 * 120.00253 * 2 1 3 13 13 N 1.46507 * 109.46540 * 300.00185 * 12 2 1 14 14 C 1.34778 * 119.99650 * 180.02562 * 13 12 2 15 15 O 1.21356 * 120.00055 * 359.97438 * 14 13 12 16 16 C 1.49447 * 120.00261 * 180.02562 * 14 13 12 17 17 O 1.21348 * 119.99850 * 37.17150 * 16 14 13 18 18 N 1.34770 * 120.00196 * 217.18288 * 16 14 13 19 19 C 1.46503 * 119.99923 * 200.30146 * 18 16 14 20 20 C 1.52992 * 117.49786 * 67.89315 * 19 18 16 21 21 C 1.52995 * 117.50095 * 359.26861 * 19 18 16 22 22 C 1.46508 * 120.00103 * 20.29686 * 18 16 14 23 23 C 1.53002 * 117.49556 * 359.81406 * 22 18 16 24 24 C 1.53000 * 117.49780 * 291.19289 * 22 18 16 25 25 H 1.09000 * 109.47164 * 299.99437 * 1 2 3 26 26 H 1.08997 * 109.47340 * 60.00319 * 1 2 3 27 27 H 1.08999 * 109.46646 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46795 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.46750 * 300.00043 * 3 2 1 30 30 H 1.09000 * 109.46638 * 60.00241 * 3 2 1 31 31 H 0.97000 * 120.00085 * 179.97438 * 7 6 4 32 32 H 1.08997 * 109.47344 * 180.02562 * 12 2 1 33 33 H 1.08997 * 109.47395 * 59.99749 * 12 2 1 34 34 H 0.96994 * 120.00204 * 359.97438 * 13 12 2 35 35 H 1.09006 * 115.55663 * 213.57485 * 19 18 16 36 36 H 1.09001 * 117.50178 * 145.02168 * 20 19 18 37 37 H 1.08997 * 117.50555 * 359.97438 * 20 19 18 38 38 H 1.09004 * 117.49802 * 359.97438 * 21 19 18 39 39 H 1.09003 * 117.51641 * 214.96958 * 21 19 18 40 40 H 1.09001 * 115.54671 * 145.51795 * 22 18 16 41 41 H 1.08993 * 117.49989 * 359.97438 * 23 22 18 42 42 H 1.09003 * 117.49666 * 145.02060 * 23 22 18 43 43 H 1.09003 * 117.49350 * 214.97793 * 24 22 18 44 44 H 1.09004 * 117.49807 * 359.97438 * 24 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2392 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3215 -1.1202 -4.0080 9 1 3.1456 -2.2875 -3.6039 10 1 1.1661 -1.5865 -4.8161 11 1 3.1466 -0.1872 -4.8165 12 6 2.0401 -0.7213 1.2492 13 7 1.5516 -0.0307 2.4454 14 6 1.8777 -0.4908 3.6695 15 8 2.5754 -1.4775 3.7808 16 6 1.3791 0.2132 4.8898 17 8 0.2632 0.6900 4.9018 18 7 2.1687 0.3189 5.9768 19 6 1.5763 0.5898 7.2890 20 6 0.7112 -0.5067 7.9135 21 6 0.0573 0.7595 7.3569 22 6 3.6196 0.1627 5.8462 23 6 4.1765 -0.1233 4.4502 24 6 4.1523 -1.2306 5.5058 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 0.7094 1.1618 -3.4844 32 1 3.1300 -0.7209 1.2494 33 1 1.6768 -1.7489 1.2492 34 1 0.9943 0.7581 2.3564 35 1 2.1813 1.1978 7.9617 36 1 0.7469 -0.6201 8.9970 37 1 0.5825 -1.4296 7.3480 38 1 -0.5013 0.6700 6.4252 39 1 -0.3375 1.4791 8.0743 40 1 4.2208 0.7830 6.5110 41 1 3.4635 -0.1957 3.6290 42 1 5.1444 0.3089 4.1962 43 1 5.1044 -1.5268 5.9463 44 1 3.4234 -2.0311 5.3794 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119172088.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:35 Heat of formation + Delta-G solvation = 50.169979 kcal Electronic energy + Delta-G solvation = -24939.410397 eV Core-core repulsion = 21475.692581 eV Total energy + Delta-G solvation = -3463.717817 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.88526 -40.39761 -38.84318 -37.96682 -36.90487 -35.05917 -33.17262 -32.76561 -28.15137 -27.59326 -27.28523 -25.85088 -23.70730 -23.55585 -23.12982 -22.76455 -20.82377 -20.46935 -19.40419 -18.32554 -17.74496 -17.49317 -16.77399 -16.73149 -16.47080 -16.18098 -15.30916 -15.25056 -15.06273 -14.82548 -14.78191 -14.27277 -14.05635 -13.51960 -13.26896 -13.12391 -12.87709 -12.76840 -12.64860 -12.54731 -12.31503 -12.13771 -11.84525 -11.61513 -11.56122 -11.35521 -11.27211 -11.26036 -11.17496 -10.72730 -10.39904 -10.28117 -9.91175 -9.53371 -8.01710 -6.17994 0.32673 1.18176 1.42997 1.47616 1.56508 1.77109 2.26327 2.47939 2.83039 2.93346 3.22482 3.24573 3.83284 3.87379 3.95449 4.02887 4.11061 4.19982 4.33883 4.39167 4.46797 4.67131 4.78411 4.85691 4.87358 4.89681 4.98834 5.03081 5.05544 5.09703 5.16759 5.22228 5.27288 5.40869 5.50941 5.63385 5.64384 5.67799 5.90325 6.10977 6.17654 6.24087 6.41041 6.63388 6.83649 6.89861 7.50199 8.97614 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.028211 B = 0.003837 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.275300 B = 7295.667723 C = 7826.487728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.051 3.949 3 C -0.122 4.122 4 C -0.524 4.524 5 H 0.051 0.949 6 C 0.027 3.973 7 N -0.900 5.900 8 Si 0.947 3.053 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.282 1.282 12 C 0.145 3.855 13 N -0.683 5.683 14 C 0.494 3.506 15 O -0.521 6.521 16 C 0.508 3.492 17 O -0.519 6.519 18 N -0.538 5.538 19 C 0.066 3.934 20 C -0.185 4.185 21 C -0.202 4.202 22 C 0.068 3.932 23 C -0.246 4.246 24 C -0.163 4.163 25 H 0.029 0.971 26 H 0.063 0.937 27 H 0.020 0.980 28 H 0.026 0.974 29 H 0.062 0.938 30 H 0.029 0.971 31 H 0.260 0.740 32 H 0.059 0.941 33 H 0.050 0.950 34 H 0.410 0.590 35 H 0.165 0.835 36 H 0.130 0.870 37 H 0.072 0.928 38 H 0.115 0.885 39 H 0.119 0.881 40 H 0.168 0.832 41 H 0.123 0.877 42 H 0.102 0.898 43 H 0.113 0.887 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.878 1.421 19.918 20.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.050 3.950 3 C -0.180 4.180 4 C -0.563 4.563 5 H 0.069 0.931 6 C -0.173 4.173 7 N -0.539 5.539 8 Si 0.774 3.226 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.208 1.208 12 C 0.022 3.978 13 N -0.335 5.335 14 C 0.278 3.722 15 O -0.401 6.401 16 C 0.291 3.709 17 O -0.397 6.397 18 N -0.268 5.268 19 C -0.037 4.037 20 C -0.223 4.223 21 C -0.239 4.239 22 C -0.035 4.035 23 C -0.282 4.282 24 C -0.201 4.201 25 H 0.047 0.953 26 H 0.082 0.918 27 H 0.040 0.960 28 H 0.045 0.955 29 H 0.081 0.919 30 H 0.048 0.952 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.247 0.753 35 H 0.182 0.818 36 H 0.148 0.852 37 H 0.090 0.910 38 H 0.133 0.867 39 H 0.137 0.863 40 H 0.185 0.815 41 H 0.140 0.860 42 H 0.120 0.880 43 H 0.131 0.869 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.702 1.106 19.849 20.221 hybrid contribution -0.025 -0.299 -1.367 1.400 sum 3.677 0.807 18.481 18.861 Atomic orbital electron populations 1.21704 0.97564 0.98743 1.00130 1.18380 0.92951 0.93159 0.90518 1.21684 0.98337 0.97794 1.00146 1.21263 1.31676 1.12218 0.91142 0.93075 1.25476 0.95119 0.95558 1.01105 1.69928 1.37053 1.23398 1.23540 0.85679 0.78031 0.78767 0.80150 1.19644 1.21053 1.20826 1.21548 0.98039 0.95332 0.82880 1.46219 1.50883 1.31499 1.04945 1.19928 0.80329 0.86675 0.85291 1.90859 1.35512 1.27608 1.86148 1.20289 0.85528 0.79975 0.85066 1.90548 1.21539 1.45562 1.82033 1.46608 1.06440 1.67687 1.06049 1.22100 0.93583 1.03813 0.84189 1.23489 1.03599 0.93090 1.02166 1.24266 0.93826 1.00529 1.05266 1.22145 0.78840 1.01468 1.01069 1.25070 1.04664 1.03976 0.94531 1.23629 1.03143 0.92516 1.00812 0.95255 0.91827 0.96043 0.95503 0.91914 0.95174 0.93089 0.92222 0.93115 0.75256 0.81786 0.85172 0.90968 0.86716 0.86283 0.81495 0.85981 0.87992 0.86921 0.88678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.63 8.08 71.98 0.58 -5.05 16 2 C 0.05 2.31 0.50 -52.92 -0.03 2.28 16 3 C -0.12 -5.38 8.08 71.98 0.58 -4.80 16 4 C -0.52 -27.00 8.01 25.60 0.21 -26.79 16 5 H 0.05 2.65 7.74 -2.91 -0.02 2.63 16 6 C 0.03 1.41 5.15 84.65 0.44 1.85 16 7 N -0.90 -47.91 9.35 21.44 0.20 -47.71 16 8 Si 0.95 42.00 29.54 68.60 2.03 44.03 16 9 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 10 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 11 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 12 C 0.14 5.86 4.49 86.38 0.39 6.25 16 13 N -0.68 -24.26 4.89 -543.23 -2.65 -26.91 16 14 C 0.49 16.86 4.78 87.27 0.42 17.27 16 15 O -0.52 -18.84 10.60 -3.26 -0.03 -18.88 16 16 C 0.51 15.77 7.20 87.27 0.63 16.40 16 17 O -0.52 -17.63 13.52 -3.24 -0.04 -17.67 16 18 N -0.54 -13.15 3.14 -775.59 -2.43 -15.58 16 19 C 0.07 1.23 6.58 44.99 0.30 1.53 16 20 C -0.19 -3.34 10.38 30.59 0.32 -3.02 16 21 C -0.20 -4.16 9.50 30.59 0.29 -3.87 16 22 C 0.07 1.42 6.59 44.99 0.30 1.72 16 23 C -0.25 -6.43 8.91 30.60 0.27 -6.16 16 24 C -0.16 -3.84 9.45 30.60 0.29 -3.55 16 25 H 0.03 1.17 6.86 -2.39 -0.02 1.16 16 26 H 0.06 3.21 6.07 -2.39 -0.01 3.20 16 27 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.06 3.11 6.07 -2.39 -0.01 3.10 16 30 H 0.03 1.15 6.86 -2.39 -0.02 1.13 16 31 H 0.26 13.31 8.31 -92.71 -0.77 12.54 16 32 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 33 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.41 14.21 6.05 -92.71 -0.56 13.65 16 35 H 0.16 1.89 8.14 -2.38 -0.02 1.87 16 36 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.12 3.23 4.77 -33.37 -0.16 3.07 16 39 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.17 2.24 8.14 -2.39 -0.02 2.22 16 41 H 0.12 3.95 2.87 -129.43 -0.37 3.58 16 42 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 43 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 44 H 0.09 2.80 6.16 -2.38 -0.01 2.79 16 Total: -1.00 -58.45 341.38 1.98 -56.47 By element: Atomic # 1 Polarization: 32.25 SS G_CDS: -0.05 Total: 32.20 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: 4.97 Total: -5.95 kcal Atomic # 7 Polarization: -85.31 SS G_CDS: -4.89 Total: -90.20 kcal Atomic # 8 Polarization: -36.47 SS G_CDS: -0.08 Total: -36.55 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Total: -58.45 1.98 -56.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119172088.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.638 kcal (2) G-P(sol) polarization free energy of solvation -58.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds