Wall clock time and date at job start Tue Mar 31 2020 07:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47058 * 2 1 4 4 C 1.50697 * 109.47041 * 240.00270 * 2 1 3 5 5 H 1.07997 * 119.99918 * 237.00536 * 4 2 1 6 6 C 1.37880 * 120.00085 * 57.00616 * 4 2 1 7 7 N 1.31515 * 119.99871 * 5.54223 * 6 4 2 8 8 Si 1.86803 * 119.99912 * 185.54108 * 6 4 2 9 9 H 1.48494 * 109.46791 * 85.00193 * 8 6 4 10 10 H 1.48497 * 109.46873 * 204.99989 * 8 6 4 11 11 H 1.48496 * 109.46882 * 324.99996 * 8 6 4 12 12 C 1.52996 * 109.47418 * 120.00190 * 2 1 3 13 13 N 1.46507 * 109.47093 * 300.00254 * 12 2 1 14 14 C 1.34772 * 119.99925 * 179.97438 * 13 12 2 15 15 O 1.21350 * 120.00406 * 359.97438 * 14 13 12 16 16 C 1.49450 * 119.99869 * 179.97438 * 14 13 12 17 17 O 1.21345 * 120.00113 * 0.02562 * 16 14 13 18 18 N 1.34780 * 120.00340 * 179.97438 * 16 14 13 19 19 C 1.46493 * 120.00324 * 180.02562 * 18 16 14 20 20 C 1.53006 * 109.47075 * 179.97438 * 19 18 16 21 21 H 1.08998 * 110.34710 * 305.70051 * 20 19 18 22 22 C 1.51101 * 110.38614 * 67.98914 * 20 19 18 23 23 C 1.30527 * 111.10608 * 135.35893 * 22 20 19 24 24 C 1.51107 * 111.10287 * 0.02562 * 23 22 20 25 25 C 1.54629 * 110.48094 * 183.34630 * 20 19 18 26 26 H 1.09000 * 109.46784 * 293.93320 * 1 2 3 27 27 H 1.08999 * 109.47130 * 53.92706 * 1 2 3 28 28 H 1.08998 * 109.47384 * 173.92971 * 1 2 3 29 29 H 1.08998 * 109.47093 * 180.02562 * 3 2 1 30 30 H 1.08992 * 109.47774 * 299.99914 * 3 2 1 31 31 H 1.09003 * 109.46987 * 60.00402 * 3 2 1 32 32 H 0.97003 * 119.99590 * 179.97438 * 7 6 4 33 33 H 1.08998 * 109.47400 * 180.02562 * 12 2 1 34 34 H 1.09002 * 109.47290 * 59.99712 * 12 2 1 35 35 H 0.96999 * 119.99480 * 359.97438 * 13 12 2 36 36 H 0.97006 * 119.99299 * 359.97438 * 18 16 14 37 37 H 1.08998 * 109.47146 * 59.99995 * 19 18 16 38 38 H 1.09000 * 109.47093 * 299.99813 * 19 18 16 39 39 H 1.08004 * 124.44622 * 315.38677 * 22 20 19 40 40 H 1.08000 * 124.44627 * 180.02562 * 23 22 20 41 41 H 1.08996 * 110.38282 * 102.37117 * 24 23 22 42 42 H 1.08994 * 110.38619 * 224.63617 * 24 23 22 43 43 H 1.09003 * 111.04459 * 334.54213 * 25 20 19 44 44 H 1.08998 * 111.03851 * 98.47921 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6925 -1.5594 -1.1322 6 6 1.6490 -0.2763 -2.4818 7 7 0.9350 0.8210 -2.6071 8 14 2.1441 -1.2469 -3.9992 9 1 1.1618 -2.3359 -4.2323 10 1 2.1707 -0.3436 -5.1776 11 1 3.4931 -1.8326 -3.7938 12 6 2.0400 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8769 -0.4915 3.6695 15 8 2.5738 -1.4786 3.7808 16 6 1.3792 0.2133 4.8897 17 8 0.6819 1.2001 4.7785 18 7 1.7039 -0.2478 6.1139 19 6 1.2156 0.4427 7.3100 20 6 1.7241 -0.2797 8.5593 21 1 1.4529 -1.3348 8.5237 22 6 3.2220 -0.1251 8.6836 23 6 3.5643 0.1675 9.9087 24 6 2.3517 0.2563 10.8059 25 6 1.1536 0.3805 9.8359 26 1 -0.3633 0.4169 0.9393 27 1 -0.3633 0.6051 -0.8306 28 1 -0.3634 -1.0219 -0.1087 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 1.9563 0.8901 32 1 0.6657 1.1265 -3.4875 33 1 3.1300 -0.7209 1.2494 34 1 1.6767 -1.7489 1.2492 35 1 0.9943 0.7581 2.3564 36 1 2.2605 -1.0373 6.2028 37 1 0.1256 0.4435 7.3096 38 1 1.5796 1.4701 7.3105 39 1 3.9181 -0.2411 7.8659 40 1 4.5808 0.3254 10.2379 41 1 2.2598 -0.6461 11.4103 42 1 2.4166 1.1361 11.4459 43 1 0.9014 1.4257 9.6568 44 1 0.2901 -0.1702 10.2087 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119561628.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:51 Heat of formation + Delta-G solvation = -66.199087 kcal Electronic energy + Delta-G solvation = -23336.676670 eV Core-core repulsion = 19867.912712 eV Total energy + Delta-G solvation = -3468.763958 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.46322 -39.25871 -38.16780 -36.47363 -34.90836 -33.26507 -30.88714 -30.30528 -29.22000 -26.49805 -25.72371 -25.38110 -24.68212 -22.62606 -21.19008 -20.01722 -19.08728 -18.95404 -18.21753 -16.74578 -16.32634 -15.98541 -15.78294 -15.59229 -15.01596 -14.79735 -14.39930 -14.34435 -13.49899 -13.40790 -12.92296 -12.69570 -12.40481 -12.26479 -12.25713 -12.21344 -11.65557 -11.63406 -11.44403 -11.39083 -11.30244 -11.16670 -10.87336 -10.70613 -10.39234 -10.20929 -9.64186 -9.53734 -9.32474 -9.26411 -9.21344 -8.80622 -8.59336 -8.36107 -6.03003 -4.12528 1.67694 1.91149 2.60220 3.28797 3.35443 3.38428 3.49405 3.92600 4.19531 4.26851 4.39813 4.46603 4.81116 4.85256 4.95083 5.10493 5.11937 5.23994 5.34601 5.44366 5.51397 5.58830 5.70851 5.86842 6.11757 6.13758 6.20493 6.23931 6.47230 6.51699 6.64018 6.83084 6.85155 6.94143 7.00211 7.12434 7.33618 7.55631 7.67860 7.73162 7.98201 7.99036 8.12733 8.32692 8.41879 8.87342 9.52927 10.99040 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.044805 B = 0.002534 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.777457 B =11045.030271 C =11323.226906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.056 3.944 3 C -0.133 4.133 4 C -0.509 4.509 5 H 0.058 0.942 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.894 3.106 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.275 1.275 12 C 0.128 3.872 13 N -0.680 5.680 14 C 0.495 3.505 15 O -0.536 6.536 16 C 0.507 3.493 17 O -0.521 6.521 18 N -0.705 5.705 19 C 0.127 3.873 20 C -0.081 4.081 21 H 0.091 0.909 22 C -0.163 4.163 23 C -0.166 4.166 24 C -0.102 4.102 25 C -0.117 4.117 26 H 0.009 0.991 27 H 0.083 0.917 28 H 0.030 0.970 29 H 0.027 0.973 30 H 0.087 0.913 31 H 0.008 0.992 32 H 0.260 0.740 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.411 0.589 36 H 0.412 0.588 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.126 0.874 40 H 0.124 0.876 41 H 0.075 0.925 42 H 0.071 0.929 43 H 0.077 0.923 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.905 -0.253 23.077 23.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.055 3.945 3 C -0.191 4.191 4 C -0.547 4.547 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.522 5.522 8 Si 0.722 3.278 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.200 1.200 12 C 0.006 3.994 13 N -0.332 5.332 14 C 0.275 3.725 15 O -0.415 6.415 16 C 0.288 3.712 17 O -0.396 6.396 18 N -0.359 5.359 19 C 0.004 3.996 20 C -0.100 4.100 21 H 0.109 0.891 22 C -0.180 4.180 23 C -0.184 4.184 24 C -0.139 4.139 25 C -0.155 4.155 26 H 0.028 0.972 27 H 0.102 0.898 28 H 0.049 0.951 29 H 0.046 0.954 30 H 0.106 0.894 31 H 0.027 0.973 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.248 0.752 36 H 0.248 0.752 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.144 0.856 40 H 0.142 0.858 41 H 0.094 0.906 42 H 0.090 0.910 43 H 0.095 0.905 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.794 -0.108 22.892 22.906 hybrid contribution 0.361 -0.536 -0.875 1.088 sum 1.155 -0.645 22.018 22.057 Atomic orbital electron populations 1.21833 0.97563 1.00262 0.99295 1.18382 0.92953 0.92864 0.90310 1.21876 0.98639 0.98244 1.00344 1.20928 1.29549 1.14426 0.89820 0.92354 1.24886 0.94962 0.94769 0.98835 1.69833 1.37657 1.21311 1.23355 0.86577 0.79000 0.79885 0.82337 1.20619 1.21331 1.19976 1.21932 0.98525 0.96060 0.82865 1.46233 1.50420 1.31366 1.05174 1.19975 0.82376 0.85226 0.84952 1.90720 1.38001 1.25965 1.86795 1.20480 0.81043 0.84703 0.85010 1.90752 1.36585 1.25437 1.86875 1.45754 1.53153 1.32215 1.04811 1.21478 0.99399 0.96469 0.82285 1.21323 0.93528 1.00730 0.94416 0.89113 1.23307 0.96087 1.00758 0.97898 1.23295 0.98971 1.00709 0.95396 1.21378 0.92615 1.02108 0.97760 1.22472 0.97795 1.01475 0.93754 0.97234 0.89845 0.95071 0.95355 0.89428 0.97317 0.92942 0.92018 0.91972 0.75177 0.75161 0.90827 0.90821 0.85572 0.85799 0.90616 0.91035 0.90458 0.90454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.02 8.03 37.16 0.30 -2.72 16 2 C 0.06 1.30 0.50 -155.66 -0.08 1.22 16 3 C -0.13 -3.06 8.11 37.16 0.30 -2.76 16 4 C -0.51 -13.22 8.01 -34.44 -0.28 -13.50 16 5 H 0.06 1.52 7.75 -52.49 -0.41 1.11 16 6 C 0.07 1.77 5.13 -17.82 -0.09 1.67 16 7 N -0.88 -23.63 9.45 55.43 0.52 -23.11 16 8 Si 0.89 20.65 29.54 -169.99 -5.02 15.63 16 9 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 12 C 0.13 2.69 4.50 -4.04 -0.02 2.67 16 13 N -0.68 -12.73 4.90 -60.73 -0.30 -13.03 16 14 C 0.50 8.74 7.89 -11.59 -0.09 8.65 16 15 O -0.54 -10.28 16.48 5.50 0.09 -10.19 16 16 C 0.51 7.82 7.89 -11.58 -0.09 7.73 16 17 O -0.52 -9.11 16.48 5.50 0.09 -9.02 16 18 N -0.71 -8.28 5.40 -60.73 -0.33 -8.60 16 19 C 0.13 1.21 5.01 -4.04 -0.02 1.19 16 20 C -0.08 -0.60 2.95 -90.72 -0.27 -0.87 16 21 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 22 C -0.16 -1.27 9.81 -35.70 -0.35 -1.62 16 23 C -0.17 -1.16 10.78 -35.69 -0.38 -1.55 16 24 C -0.10 -0.60 6.81 -26.81 -0.18 -0.78 16 25 C -0.12 -0.71 6.71 -25.00 -0.17 -0.88 16 26 H 0.01 0.18 6.71 -51.93 -0.35 -0.17 16 27 H 0.08 2.09 6.25 -51.93 -0.32 1.77 16 28 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.09 2.22 6.10 -51.93 -0.32 1.90 16 31 H 0.01 0.17 6.86 -51.93 -0.36 -0.19 16 32 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 33 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 34 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 35 H 0.41 7.58 5.63 -40.82 -0.23 7.35 16 36 H 0.41 4.40 7.83 -40.82 -0.32 4.08 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 40 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 41 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.08 0.47 7.92 -51.93 -0.41 0.05 16 44 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 356.58 15.07 5.37 5.37 Total: -1.00 -28.58 356.58 -7.91 -36.49 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -6.92 Total: 8.01 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: -1.42 Total: -1.54 kcal Atomic # 7 Polarization: -44.64 SS G_CDS: -0.10 Total: -44.74 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: 0.18 Total: -19.21 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.58 -7.91 -36.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119561628.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.711 kcal (2) G-P(sol) polarization free energy of solvation -28.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds