Wall clock time and date at job start Tue Mar 31 2020 07:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47058 * 2 1 4 4 C 1.50697 * 109.47041 * 240.00270 * 2 1 3 5 5 H 1.07997 * 119.99918 * 237.00536 * 4 2 1 6 6 C 1.37880 * 120.00085 * 57.00616 * 4 2 1 7 7 N 1.31515 * 119.99871 * 5.54223 * 6 4 2 8 8 Si 1.86803 * 119.99912 * 185.54108 * 6 4 2 9 9 H 1.48494 * 109.46791 * 85.00193 * 8 6 4 10 10 H 1.48497 * 109.46873 * 204.99989 * 8 6 4 11 11 H 1.48496 * 109.46882 * 324.99996 * 8 6 4 12 12 C 1.52996 * 109.47418 * 120.00190 * 2 1 3 13 13 N 1.46507 * 109.47093 * 300.00254 * 12 2 1 14 14 C 1.34772 * 119.99925 * 179.97438 * 13 12 2 15 15 O 1.21350 * 120.00406 * 359.97438 * 14 13 12 16 16 C 1.49450 * 119.99869 * 179.97438 * 14 13 12 17 17 O 1.21345 * 120.00113 * 0.02562 * 16 14 13 18 18 N 1.34780 * 120.00340 * 179.97438 * 16 14 13 19 19 C 1.46493 * 120.00324 * 180.02562 * 18 16 14 20 20 C 1.53006 * 109.47075 * 179.97438 * 19 18 16 21 21 H 1.08998 * 110.34710 * 305.70051 * 20 19 18 22 22 C 1.51101 * 110.38614 * 67.98914 * 20 19 18 23 23 C 1.30527 * 111.10608 * 135.35893 * 22 20 19 24 24 C 1.51107 * 111.10287 * 0.02562 * 23 22 20 25 25 C 1.54629 * 110.48094 * 183.34630 * 20 19 18 26 26 H 1.09000 * 109.46784 * 293.93320 * 1 2 3 27 27 H 1.08999 * 109.47130 * 53.92706 * 1 2 3 28 28 H 1.08998 * 109.47384 * 173.92971 * 1 2 3 29 29 H 1.08998 * 109.47093 * 180.02562 * 3 2 1 30 30 H 1.08992 * 109.47774 * 299.99914 * 3 2 1 31 31 H 1.09003 * 109.46987 * 60.00402 * 3 2 1 32 32 H 0.97003 * 119.99590 * 179.97438 * 7 6 4 33 33 H 1.08998 * 109.47400 * 180.02562 * 12 2 1 34 34 H 1.09002 * 109.47290 * 59.99712 * 12 2 1 35 35 H 0.96999 * 119.99480 * 359.97438 * 13 12 2 36 36 H 0.97006 * 119.99299 * 359.97438 * 18 16 14 37 37 H 1.08998 * 109.47146 * 59.99995 * 19 18 16 38 38 H 1.09000 * 109.47093 * 299.99813 * 19 18 16 39 39 H 1.08004 * 124.44622 * 315.38677 * 22 20 19 40 40 H 1.08000 * 124.44627 * 180.02562 * 23 22 20 41 41 H 1.08996 * 110.38282 * 102.37117 * 24 23 22 42 42 H 1.08994 * 110.38619 * 224.63617 * 24 23 22 43 43 H 1.09003 * 111.04459 * 334.54213 * 25 20 19 44 44 H 1.08998 * 111.03851 * 98.47921 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6925 -1.5594 -1.1322 6 6 1.6490 -0.2763 -2.4818 7 7 0.9350 0.8210 -2.6071 8 14 2.1441 -1.2469 -3.9992 9 1 1.1618 -2.3359 -4.2323 10 1 2.1707 -0.3436 -5.1776 11 1 3.4931 -1.8326 -3.7938 12 6 2.0400 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8769 -0.4915 3.6695 15 8 2.5738 -1.4786 3.7808 16 6 1.3792 0.2133 4.8897 17 8 0.6819 1.2001 4.7785 18 7 1.7039 -0.2478 6.1139 19 6 1.2156 0.4427 7.3100 20 6 1.7241 -0.2797 8.5593 21 1 1.4529 -1.3348 8.5237 22 6 3.2220 -0.1251 8.6836 23 6 3.5643 0.1675 9.9087 24 6 2.3517 0.2563 10.8059 25 6 1.1536 0.3805 9.8359 26 1 -0.3633 0.4169 0.9393 27 1 -0.3633 0.6051 -0.8306 28 1 -0.3634 -1.0219 -0.1087 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 1.9563 0.8901 32 1 0.6657 1.1265 -3.4875 33 1 3.1300 -0.7209 1.2494 34 1 1.6767 -1.7489 1.2492 35 1 0.9943 0.7581 2.3564 36 1 2.2605 -1.0373 6.2028 37 1 0.1256 0.4435 7.3096 38 1 1.5796 1.4701 7.3105 39 1 3.9181 -0.2411 7.8659 40 1 4.5808 0.3254 10.2379 41 1 2.2598 -0.6461 11.4103 42 1 2.4166 1.1361 11.4459 43 1 0.9014 1.4257 9.6568 44 1 0.2901 -0.1702 10.2087 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119561628.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:50 Heat of formation + Delta-G solvation = -83.612978 kcal Electronic energy + Delta-G solvation = -23337.431793 eV Core-core repulsion = 19867.912712 eV Total energy + Delta-G solvation = -3469.519081 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.73786 -40.12719 -39.33423 -38.19492 -35.99515 -34.92208 -32.75042 -31.06452 -29.75128 -27.97962 -27.59589 -27.23912 -25.84589 -23.83598 -21.90892 -21.18563 -20.69335 -19.80017 -19.43551 -18.03162 -17.69401 -17.20180 -16.84395 -16.81931 -16.46602 -16.26279 -15.69452 -15.45450 -14.90225 -14.72844 -14.59782 -14.07815 -14.04673 -13.26147 -13.11368 -13.06401 -12.84768 -12.83630 -12.72541 -12.70011 -12.59559 -12.27070 -12.15889 -12.11901 -12.09124 -11.90730 -11.50728 -11.30418 -10.77292 -10.63486 -10.40730 -10.32288 -10.11893 -9.82210 -8.02237 -6.17445 0.34870 1.32375 1.39820 1.44892 1.47683 1.55081 2.14861 2.45597 2.72531 3.22012 3.46004 3.64194 3.71688 3.88438 4.29819 4.32732 4.34284 4.46965 4.54567 4.60989 4.67646 4.69788 4.92373 4.94554 4.97188 5.01716 5.03215 5.05145 5.14117 5.16178 5.21197 5.26522 5.38086 5.47717 5.64201 5.64378 5.68226 5.93785 5.97556 6.09530 6.18165 6.38709 6.40941 6.73853 6.86628 6.96545 7.50084 8.97665 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.044805 B = 0.002534 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.777457 B =11045.030271 C =11323.226906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.050 3.950 3 C -0.124 4.124 4 C -0.527 4.527 5 H 0.051 0.949 6 C 0.026 3.974 7 N -0.901 5.901 8 Si 0.948 3.052 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.273 1.273 12 C 0.143 3.857 13 N -0.682 5.682 14 C 0.497 3.503 15 O -0.551 6.551 16 C 0.512 3.488 17 O -0.543 6.543 18 N -0.686 5.686 19 C 0.126 3.874 20 C -0.074 4.074 21 H 0.097 0.903 22 C -0.183 4.183 23 C -0.163 4.163 24 C -0.102 4.102 25 C -0.115 4.115 26 H 0.031 0.969 27 H 0.060 0.940 28 H 0.024 0.976 29 H 0.023 0.977 30 H 0.063 0.937 31 H 0.029 0.971 32 H 0.260 0.740 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.413 0.587 36 H 0.419 0.581 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.119 0.881 40 H 0.132 0.868 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.077 0.923 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.867 -0.562 24.879 24.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.049 3.951 3 C -0.181 4.181 4 C -0.566 4.566 5 H 0.070 0.930 6 C -0.174 4.174 7 N -0.539 5.539 8 Si 0.775 3.225 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.198 1.198 12 C 0.020 3.980 13 N -0.333 5.333 14 C 0.278 3.722 15 O -0.431 6.431 16 C 0.292 3.708 17 O -0.421 6.421 18 N -0.339 5.339 19 C 0.004 3.996 20 C -0.093 4.093 21 H 0.115 0.885 22 C -0.201 4.201 23 C -0.181 4.181 24 C -0.139 4.139 25 C -0.153 4.153 26 H 0.050 0.950 27 H 0.079 0.921 28 H 0.043 0.957 29 H 0.042 0.958 30 H 0.082 0.918 31 H 0.048 0.952 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.251 0.749 36 H 0.256 0.744 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.137 0.863 40 H 0.149 0.851 41 H 0.103 0.897 42 H 0.098 0.902 43 H 0.096 0.904 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.768 -0.432 24.737 24.753 hybrid contribution 0.411 -0.447 -1.340 1.471 sum 1.178 -0.879 23.397 23.443 Atomic orbital electron populations 1.21683 0.97283 0.99500 0.99498 1.18385 0.93157 0.92991 0.90555 1.21724 0.98227 0.98037 1.00160 1.21221 1.29631 1.14518 0.91187 0.93028 1.25506 0.95173 0.95552 1.01121 1.69950 1.38179 1.22076 1.23692 0.85726 0.78616 0.78680 0.79493 1.20406 1.21170 1.19821 1.21543 0.97901 0.95544 0.82991 1.46083 1.50776 1.31439 1.05046 1.20359 0.81671 0.84893 0.85308 1.90711 1.38568 1.26672 1.87104 1.20004 0.81179 0.84400 0.85193 1.90751 1.37915 1.26356 1.87069 1.45767 1.51888 1.31913 1.04325 1.21667 0.99624 0.96320 0.82007 1.21301 0.93286 1.00911 0.93796 0.88505 1.23348 0.96312 1.02252 0.98220 1.23543 0.99902 0.99275 0.95376 1.21427 0.91824 1.02978 0.97682 1.22510 0.98332 1.01579 0.92911 0.95020 0.92077 0.95704 0.95790 0.91790 0.95212 0.93061 0.92756 0.92631 0.74902 0.74386 0.90433 0.91299 0.86292 0.85056 0.89682 0.90155 0.90446 0.89104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.56 8.03 71.98 0.58 -4.98 16 2 C 0.05 2.32 0.50 -52.93 -0.03 2.29 16 3 C -0.12 -5.66 8.11 71.98 0.58 -5.08 16 4 C -0.53 -27.50 8.01 25.60 0.20 -27.30 16 5 H 0.05 2.70 7.75 -2.91 -0.02 2.67 16 6 C 0.03 1.39 5.13 84.66 0.43 1.82 16 7 N -0.90 -48.48 9.45 21.45 0.20 -48.28 16 8 Si 0.95 42.36 29.54 68.60 2.03 44.38 16 9 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 10 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 11 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 12 C 0.14 5.97 4.50 86.38 0.39 6.35 16 13 N -0.68 -24.95 4.90 -464.41 -2.27 -27.22 16 14 C 0.50 17.08 7.89 87.27 0.69 17.77 16 15 O -0.55 -20.64 16.48 -3.25 -0.05 -20.70 16 16 C 0.51 15.18 7.89 87.27 0.69 15.87 16 17 O -0.54 -18.34 16.48 -3.23 -0.05 -18.40 16 18 N -0.69 -15.10 5.40 -464.42 -2.51 -17.61 16 19 C 0.13 2.19 5.01 86.38 0.43 2.62 16 20 C -0.07 -0.95 2.95 -10.86 -0.03 -0.98 16 21 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 22 C -0.18 -2.59 9.81 26.26 0.26 -2.33 16 23 C -0.16 -1.98 10.78 26.26 0.28 -1.70 16 24 C -0.10 -0.95 6.81 30.54 0.21 -0.74 16 25 C -0.12 -1.12 6.71 31.71 0.21 -0.90 16 26 H 0.03 1.26 6.71 -2.39 -0.02 1.24 16 27 H 0.06 3.07 6.25 -2.39 -0.01 3.06 16 28 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.02 1.06 8.14 -2.39 -0.02 1.05 16 30 H 0.06 3.25 6.10 -2.39 -0.01 3.24 16 31 H 0.03 1.19 6.86 -2.39 -0.02 1.18 16 32 H 0.26 13.50 8.31 -92.71 -0.77 12.73 16 33 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 35 H 0.41 14.79 5.63 -92.71 -0.52 14.27 16 36 H 0.42 8.31 7.83 -92.70 -0.73 7.58 16 37 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.12 1.81 8.06 -2.91 -0.02 1.79 16 40 H 0.13 1.35 8.06 -2.91 -0.02 1.32 16 41 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.08 0.76 7.92 -2.39 -0.02 0.74 16 44 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -59.70 356.58 2.00 -57.70 By element: Atomic # 1 Polarization: 27.66 SS G_CDS: -0.24 Total: 27.42 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: 4.90 Total: 2.71 kcal Atomic # 7 Polarization: -88.53 SS G_CDS: -4.58 Total: -93.11 kcal Atomic # 8 Polarization: -38.99 SS G_CDS: -0.11 Total: -39.09 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.38 kcal Total: -59.70 2.00 -57.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119561628.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.911 kcal (2) G-P(sol) polarization free energy of solvation -59.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds