Wall clock time and date at job start Tue Mar 31 2020 06:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50707 * 109.46893 * 2 1 4 4 N 1.33694 * 126.27151 * 90.02560 * 3 2 1 5 5 C 1.30614 * 108.99373 * 179.97438 * 4 3 2 6 6 O 1.33665 * 109.15323 * 0.02562 * 5 4 3 7 7 C 1.35345 * 107.68784 * 359.75350 * 6 5 4 8 8 C 1.46717 * 126.64598 * 180.26738 * 7 6 5 9 9 O 1.21690 * 119.99883 * 173.68224 * 8 7 6 10 10 N 1.34779 * 120.00122 * 353.67921 * 8 7 6 11 11 C 1.46502 * 119.99914 * 4.67652 * 10 8 7 12 12 C 1.50700 * 109.47142 * 83.16667 * 11 10 8 13 13 H 1.07995 * 120.00078 * 0.02562 * 12 11 10 14 14 C 1.37876 * 119.99868 * 179.97438 * 12 11 10 15 15 N 1.31517 * 120.00096 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00239 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47142 * 59.99802 * 16 14 12 18 18 H 1.48498 * 109.47269 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.46855 * 300.00256 * 16 14 12 20 20 C 1.46495 * 120.00077 * 184.66793 * 10 8 7 21 21 C 1.52995 * 109.47215 * 178.03489 * 20 10 8 22 22 C 1.53002 * 109.47481 * 298.04097 * 20 10 8 23 23 C 1.53011 * 109.46891 * 58.03628 * 20 10 8 24 24 C 1.52992 * 109.46794 * 58.37913 * 23 20 10 25 25 H 1.08995 * 109.47188 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46985 * 300.00334 * 1 2 3 27 27 H 1.08998 * 109.47133 * 59.99702 * 1 2 3 28 28 H 1.08999 * 109.47102 * 240.00176 * 2 1 3 29 29 H 1.09000 * 109.47116 * 119.99518 * 2 1 3 30 30 H 1.07999 * 125.42366 * 180.02562 * 5 4 3 31 31 H 1.08995 * 109.46775 * 203.17084 * 11 10 8 32 32 H 1.08998 * 109.46763 * 323.16720 * 11 10 8 33 33 H 0.96995 * 120.00349 * 179.97438 * 15 14 12 34 34 H 1.08996 * 109.46998 * 60.00420 * 21 20 10 35 35 H 1.09007 * 109.47509 * 180.02562 * 21 20 10 36 36 H 1.09001 * 109.47233 * 300.00150 * 21 20 10 37 37 H 1.08997 * 109.47220 * 65.40508 * 22 20 10 38 38 H 1.08998 * 109.47371 * 185.40737 * 22 20 10 39 39 H 1.09005 * 109.46477 * 305.40424 * 22 20 10 40 40 H 1.08995 * 109.47067 * 178.37642 * 23 20 10 41 41 H 1.08995 * 109.46924 * 298.37902 * 23 20 10 42 42 H 1.09005 * 109.47173 * 179.97438 * 24 23 20 43 43 H 1.09006 * 109.47459 * 300.00014 * 24 23 20 44 44 H 1.09004 * 109.47578 * 60.00095 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2964 2.1665 1.0779 5 6 2.7125 3.3422 0.6899 6 8 2.7263 3.3837 -0.6460 7 6 2.3056 2.1798 -1.0992 8 6 2.1681 1.7713 -2.5016 9 8 1.8877 0.6192 -2.7751 10 7 2.3522 2.6722 -3.4871 11 6 2.7895 4.0325 -3.1637 12 6 4.2881 4.0545 -3.0069 13 1 4.8579 3.1461 -3.1357 14 6 4.9319 5.2344 -2.7001 15 7 4.2382 6.3409 -2.5447 16 14 6.7896 5.2620 -2.5064 17 1 7.4261 4.8254 -3.7751 18 1 7.2328 6.6408 -2.1785 19 1 7.1867 4.3412 -1.4111 20 6 2.1152 2.2910 -4.8816 21 6 2.3475 3.5016 -5.7878 22 6 3.0774 1.1680 -5.2740 23 6 0.6729 1.8051 -5.0394 24 6 -0.2888 2.9142 -4.6086 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.9996 4.1520 1.3444 31 1 2.4982 4.7084 -3.9676 32 1 2.3220 4.3526 -2.2326 33 1 4.6910 7.1710 -2.3285 34 1 3.3749 3.8478 -5.6753 35 1 2.1707 3.2182 -6.8254 36 1 1.6619 4.3016 -5.5082 37 1 2.8481 0.2739 -4.6943 38 1 2.9678 0.9503 -6.3364 39 1 4.1019 1.4800 -5.0709 40 1 0.4880 1.5487 -6.0825 41 1 0.5157 0.9252 -4.4156 42 1 -1.3164 2.5682 -4.7215 43 1 -0.1039 3.1706 -3.5654 44 1 -0.1316 3.7941 -5.2324 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121194071.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:48 Heat of formation + Delta-G solvation = -17.639378 kcal Electronic energy + Delta-G solvation = -26041.286244 eV Core-core repulsion = 22574.627993 eV Total energy + Delta-G solvation = -3466.658251 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.79346 -39.66900 -36.58017 -35.05853 -33.70103 -32.44457 -31.99342 -30.10885 -28.88914 -27.80106 -26.34030 -24.28921 -23.26489 -23.13150 -22.29175 -21.31304 -19.87669 -18.22058 -16.87198 -16.38758 -16.15568 -15.75724 -15.51196 -14.63235 -14.53201 -14.36407 -14.15786 -13.77033 -13.54402 -12.97740 -12.91568 -12.70265 -12.35582 -12.29492 -11.90949 -11.85997 -11.56285 -11.27736 -11.22988 -11.13157 -11.07155 -10.78585 -10.73622 -10.65797 -10.53636 -10.37739 -10.34145 -10.07471 -10.02469 -9.70815 -9.06731 -8.52131 -8.39103 -7.71403 -6.16572 -4.21409 1.51395 2.97172 3.19200 3.22770 3.27530 3.31557 3.78377 3.87717 4.33837 4.51811 5.09424 5.16425 5.17156 5.29058 5.38735 5.49265 5.63780 5.66336 5.70046 5.76689 5.92658 5.98849 6.09382 6.12160 6.13197 6.18426 6.23562 6.24750 6.38840 6.42958 6.46215 6.47261 6.55679 6.61515 6.75268 6.80405 6.87354 6.89700 7.31324 7.52960 7.76951 8.07546 8.08301 8.25533 8.75751 8.88227 9.43879 10.90458 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.011779 B = 0.008468 C = 0.005770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.485731 B = 3305.587551 C = 4851.631057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.046 4.046 3 C 0.049 3.951 4 N -0.504 5.504 5 C 0.176 3.824 6 O -0.134 6.134 7 C -0.082 4.082 8 C 0.604 3.396 9 O -0.545 6.545 10 N -0.571 5.571 11 C 0.226 3.774 12 C -0.524 4.524 13 H 0.056 0.944 14 C 0.069 3.931 15 N -0.890 5.890 16 Si 0.890 3.110 17 H -0.277 1.277 18 H -0.286 1.286 19 H -0.277 1.277 20 C 0.179 3.821 21 C -0.151 4.151 22 C -0.159 4.159 23 C -0.134 4.134 24 C -0.147 4.147 25 H 0.058 0.942 26 H 0.050 0.950 27 H 0.055 0.945 28 H 0.099 0.901 29 H 0.072 0.928 30 H 0.243 0.757 31 H 0.050 0.950 32 H 0.047 0.953 33 H 0.264 0.736 34 H 0.077 0.923 35 H 0.055 0.945 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.053 0.947 39 H 0.059 0.941 40 H 0.063 0.937 41 H 0.082 0.918 42 H 0.046 0.954 43 H 0.052 0.948 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.255 -5.986 -0.452 8.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.083 4.083 3 C -0.076 4.076 4 N -0.234 5.234 5 C -0.049 4.049 6 O -0.016 6.016 7 C -0.138 4.138 8 C 0.391 3.609 9 O -0.428 6.428 10 N -0.300 5.300 11 C 0.107 3.893 12 C -0.563 4.563 13 H 0.074 0.926 14 C -0.133 4.133 15 N -0.529 5.529 16 Si 0.718 3.282 17 H -0.202 1.202 18 H -0.211 1.211 19 H -0.203 1.203 20 C 0.095 3.905 21 C -0.208 4.208 22 C -0.217 4.217 23 C -0.172 4.172 24 C -0.205 4.205 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.117 0.883 29 H 0.091 0.909 30 H 0.259 0.741 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.100 0.900 42 H 0.065 0.935 43 H 0.071 0.929 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.406 -6.413 -0.017 9.064 hybrid contribution 1.437 0.780 -0.279 1.658 sum -4.969 -5.633 -0.296 7.517 Atomic orbital electron populations 1.21616 0.94609 1.01462 1.01754 1.20030 0.95992 0.88528 1.03790 1.21841 1.00864 0.98036 0.86829 1.70232 1.17987 1.03433 1.31707 1.28164 0.98076 0.97195 0.81448 1.85144 1.62054 1.32234 1.22198 1.23021 1.09187 0.85310 0.96321 1.16408 0.77820 0.84912 0.81740 1.90675 1.52014 1.18043 1.82042 1.48297 1.62835 1.14224 1.04671 1.19796 0.95326 0.76545 0.97669 1.21321 0.91590 0.94896 1.48484 0.92617 1.24828 0.98102 0.95369 0.95036 1.69906 1.35621 0.99446 1.47919 0.86687 0.85694 0.77065 0.78802 1.20207 1.21142 1.20290 1.20269 0.94109 0.94988 0.81132 1.22144 1.04094 0.97103 0.97476 1.22191 0.99607 0.99414 1.00479 1.21944 0.94045 0.99804 1.01452 1.21749 0.98138 0.98759 1.01822 0.92336 0.93049 0.92582 0.88317 0.90927 0.74068 0.93243 0.93530 0.92640 0.90365 0.92577 0.91756 0.90835 0.92835 0.92234 0.91855 0.89988 0.93514 0.92856 0.92668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.90 37.16 0.37 -1.55 16 2 C -0.05 -0.73 6.00 -27.88 -0.17 -0.90 16 3 C 0.05 0.93 6.41 -82.46 -0.53 0.40 16 4 N -0.50 -9.27 11.26 -10.88 -0.12 -9.40 16 5 C 0.18 3.10 13.21 52.24 0.69 3.79 16 6 O -0.13 -2.83 6.86 4.42 0.03 -2.80 16 7 C -0.08 -1.69 6.77 -36.84 -0.25 -1.94 16 8 C 0.60 12.57 6.91 -12.83 -0.09 12.48 16 9 O -0.55 -11.16 11.07 5.20 0.06 -11.10 16 10 N -0.57 -11.66 1.60 -161.69 -0.26 -11.92 16 11 C 0.23 5.22 4.13 -5.19 -0.02 5.20 16 12 C -0.52 -13.33 8.31 -34.44 -0.29 -13.62 16 13 H 0.06 1.48 7.81 -52.49 -0.41 1.07 16 14 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 15 N -0.89 -23.77 13.29 55.43 0.74 -23.03 16 16 Si 0.89 20.49 29.54 -169.99 -5.02 15.47 16 17 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 18 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 C 0.18 3.16 0.73 -131.82 -0.10 3.06 16 21 C -0.15 -2.53 6.83 37.16 0.25 -2.27 16 22 C -0.16 -2.71 8.34 37.16 0.31 -2.40 16 23 C -0.13 -2.10 4.72 -26.73 -0.13 -2.23 16 24 C -0.15 -2.23 9.42 37.15 0.35 -1.88 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.10 1.66 6.34 -51.93 -0.33 1.34 16 29 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 30 H 0.24 3.10 8.06 -52.49 -0.42 2.68 16 31 H 0.05 1.18 5.44 -51.93 -0.28 0.90 16 32 H 0.05 1.16 5.39 -51.93 -0.28 0.88 16 33 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 34 H 0.08 1.49 7.49 -51.93 -0.39 1.10 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 1.09 5.37 -51.93 -0.28 0.81 16 37 H 0.07 1.33 6.32 -51.93 -0.33 1.00 16 38 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.08 1.40 6.23 -51.93 -0.32 1.08 16 42 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.05 0.91 7.49 -51.93 -0.39 0.53 16 44 H 0.05 0.80 6.47 -51.93 -0.34 0.46 16 LS Contribution 346.06 15.07 5.22 5.22 Total: -1.00 -28.20 346.06 -5.76 -33.96 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -6.71 Total: 3.79 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: 0.31 Total: -0.18 kcal Atomic # 7 Polarization: -44.71 SS G_CDS: 0.36 Total: -44.35 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: 0.09 Total: -13.90 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -28.20 -5.76 -33.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121194071.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.323 kcal (2) G-P(sol) polarization free energy of solvation -28.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds