Wall clock time and date at job start Tue Mar 31 2020 06:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50707 * 109.46893 * 2 1 4 4 N 1.33694 * 126.27151 * 90.02560 * 3 2 1 5 5 C 1.30614 * 108.99373 * 179.97438 * 4 3 2 6 6 O 1.33665 * 109.15323 * 0.02562 * 5 4 3 7 7 C 1.35345 * 107.68784 * 359.75350 * 6 5 4 8 8 C 1.46717 * 126.64598 * 180.26738 * 7 6 5 9 9 O 1.21690 * 119.99883 * 173.68224 * 8 7 6 10 10 N 1.34779 * 120.00122 * 353.67921 * 8 7 6 11 11 C 1.46502 * 119.99914 * 4.67652 * 10 8 7 12 12 C 1.50700 * 109.47142 * 83.16667 * 11 10 8 13 13 H 1.07995 * 120.00078 * 0.02562 * 12 11 10 14 14 C 1.37876 * 119.99868 * 179.97438 * 12 11 10 15 15 N 1.31517 * 120.00096 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00239 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47142 * 59.99802 * 16 14 12 18 18 H 1.48498 * 109.47269 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.46855 * 300.00256 * 16 14 12 20 20 C 1.46495 * 120.00077 * 184.66793 * 10 8 7 21 21 C 1.52995 * 109.47215 * 178.03489 * 20 10 8 22 22 C 1.53002 * 109.47481 * 298.04097 * 20 10 8 23 23 C 1.53011 * 109.46891 * 58.03628 * 20 10 8 24 24 C 1.52992 * 109.46794 * 58.37913 * 23 20 10 25 25 H 1.08995 * 109.47188 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46985 * 300.00334 * 1 2 3 27 27 H 1.08998 * 109.47133 * 59.99702 * 1 2 3 28 28 H 1.08999 * 109.47102 * 240.00176 * 2 1 3 29 29 H 1.09000 * 109.47116 * 119.99518 * 2 1 3 30 30 H 1.07999 * 125.42366 * 180.02562 * 5 4 3 31 31 H 1.08995 * 109.46775 * 203.17084 * 11 10 8 32 32 H 1.08998 * 109.46763 * 323.16720 * 11 10 8 33 33 H 0.96995 * 120.00349 * 179.97438 * 15 14 12 34 34 H 1.08996 * 109.46998 * 60.00420 * 21 20 10 35 35 H 1.09007 * 109.47509 * 180.02562 * 21 20 10 36 36 H 1.09001 * 109.47233 * 300.00150 * 21 20 10 37 37 H 1.08997 * 109.47220 * 65.40508 * 22 20 10 38 38 H 1.08998 * 109.47371 * 185.40737 * 22 20 10 39 39 H 1.09005 * 109.46477 * 305.40424 * 22 20 10 40 40 H 1.08995 * 109.47067 * 178.37642 * 23 20 10 41 41 H 1.08995 * 109.46924 * 298.37902 * 23 20 10 42 42 H 1.09005 * 109.47173 * 179.97438 * 24 23 20 43 43 H 1.09006 * 109.47459 * 300.00014 * 24 23 20 44 44 H 1.09004 * 109.47578 * 60.00095 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2964 2.1665 1.0779 5 6 2.7125 3.3422 0.6899 6 8 2.7263 3.3837 -0.6460 7 6 2.3056 2.1798 -1.0992 8 6 2.1681 1.7713 -2.5016 9 8 1.8877 0.6192 -2.7751 10 7 2.3522 2.6722 -3.4871 11 6 2.7895 4.0325 -3.1637 12 6 4.2881 4.0545 -3.0069 13 1 4.8579 3.1461 -3.1357 14 6 4.9319 5.2344 -2.7001 15 7 4.2382 6.3409 -2.5447 16 14 6.7896 5.2620 -2.5064 17 1 7.4261 4.8254 -3.7751 18 1 7.2328 6.6408 -2.1785 19 1 7.1867 4.3412 -1.4111 20 6 2.1152 2.2910 -4.8816 21 6 2.3475 3.5016 -5.7878 22 6 3.0774 1.1680 -5.2740 23 6 0.6729 1.8051 -5.0394 24 6 -0.2888 2.9142 -4.6086 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.9996 4.1520 1.3444 31 1 2.4982 4.7084 -3.9676 32 1 2.3220 4.3526 -2.2326 33 1 4.6910 7.1710 -2.3285 34 1 3.3749 3.8478 -5.6753 35 1 2.1707 3.2182 -6.8254 36 1 1.6619 4.3016 -5.5082 37 1 2.8481 0.2739 -4.6943 38 1 2.9678 0.9503 -6.3364 39 1 4.1019 1.4800 -5.0709 40 1 0.4880 1.5487 -6.0825 41 1 0.5157 0.9252 -4.4156 42 1 -1.3164 2.5682 -4.7215 43 1 -0.1039 3.1706 -3.5654 44 1 -0.1316 3.7941 -5.2324 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121194071.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:48 Heat of formation + Delta-G solvation = -34.165777 kcal Electronic energy + Delta-G solvation = -26042.002882 eV Core-core repulsion = 22574.627993 eV Total energy + Delta-G solvation = -3467.374889 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.28507 -41.19529 -38.08872 -36.50039 -35.44096 -33.95631 -33.60216 -31.42213 -30.33493 -29.45954 -27.94756 -25.68720 -24.87581 -24.50553 -23.83329 -22.76026 -21.32780 -19.71181 -18.74394 -18.01610 -17.70674 -17.29077 -16.99215 -16.38037 -16.09222 -15.72296 -15.54336 -15.22348 -14.89170 -14.42459 -14.31104 -14.23936 -14.02165 -13.62210 -13.41342 -13.36886 -12.95236 -12.85492 -12.79703 -12.61824 -12.50476 -12.26220 -12.20690 -12.07584 -12.00909 -11.95672 -11.78077 -11.70691 -11.51868 -11.42734 -10.62451 -10.47735 -9.90273 -9.34403 -8.14948 -6.25501 0.00244 1.37707 1.39915 1.46133 1.52659 1.74934 2.20063 2.32642 2.46895 3.15356 3.19276 3.65402 3.78389 3.95711 4.05144 4.16368 4.34438 4.40900 4.42608 4.49622 4.62512 4.66312 4.73760 4.79961 4.82147 4.85585 4.95714 5.01287 5.02401 5.05971 5.14501 5.22511 5.24205 5.25839 5.33586 5.35195 5.43966 5.48672 5.53695 5.74221 5.93482 6.13327 6.48271 6.66212 6.86301 7.22412 7.43068 8.90558 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.011779 B = 0.008468 C = 0.005770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.485731 B = 3305.587551 C = 4851.631057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.046 4.046 3 C 0.056 3.944 4 N -0.513 5.513 5 C 0.186 3.814 6 O -0.161 6.161 7 C -0.121 4.121 8 C 0.598 3.402 9 O -0.548 6.548 10 N -0.574 5.574 11 C 0.245 3.755 12 C -0.526 4.526 13 H 0.037 0.963 14 C 0.033 3.967 15 N -0.913 5.913 16 Si 0.940 3.060 17 H -0.276 1.276 18 H -0.278 1.278 19 H -0.280 1.280 20 C 0.167 3.833 21 C -0.143 4.143 22 C -0.151 4.151 23 C -0.126 4.126 24 C -0.143 4.143 25 H 0.085 0.915 26 H 0.054 0.946 27 H 0.038 0.962 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.284 0.716 31 H 0.040 0.960 32 H 0.030 0.970 33 H 0.266 0.734 34 H 0.048 0.952 35 H 0.090 0.910 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.085 0.915 39 H 0.035 0.965 40 H 0.093 0.907 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.024 0.976 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.679 -6.615 -0.684 9.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.084 4.084 3 C -0.068 4.068 4 N -0.242 5.242 5 C -0.039 4.039 6 O -0.045 6.045 7 C -0.177 4.177 8 C 0.386 3.614 9 O -0.431 6.431 10 N -0.303 5.303 11 C 0.125 3.875 12 C -0.564 4.564 13 H 0.056 0.944 14 C -0.167 4.167 15 N -0.552 5.552 16 Si 0.767 3.233 17 H -0.201 1.201 18 H -0.203 1.203 19 H -0.206 1.206 20 C 0.084 3.916 21 C -0.200 4.200 22 C -0.209 4.209 23 C -0.164 4.164 24 C -0.200 4.200 25 H 0.104 0.896 26 H 0.073 0.927 27 H 0.057 0.943 28 H 0.106 0.894 29 H 0.108 0.892 30 H 0.299 0.701 31 H 0.058 0.942 32 H 0.047 0.953 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.109 0.891 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.104 0.896 39 H 0.054 0.946 40 H 0.112 0.888 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.043 0.957 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.838 -7.064 -0.261 9.835 hybrid contribution 1.554 0.951 -0.150 1.828 sum -5.284 -6.113 -0.411 8.091 Atomic orbital electron populations 1.21558 0.92945 1.03049 1.01040 1.20144 0.97329 0.86845 1.04055 1.22337 0.99155 0.98924 0.86412 1.70289 1.18747 1.03819 1.31384 1.29192 0.96007 0.97912 0.80750 1.85102 1.62873 1.32767 1.23771 1.23168 1.11710 0.85936 0.96863 1.16532 0.77773 0.84994 0.82078 1.90654 1.52274 1.17854 1.82282 1.48276 1.62892 1.13151 1.05982 1.19356 0.93870 0.77866 0.96409 1.21384 0.92725 0.94158 1.48167 0.94445 1.25372 1.01312 0.95136 0.94907 1.69979 1.36837 0.99772 1.48616 0.85892 0.81805 0.77149 0.78465 1.20105 1.20341 1.20602 1.20617 0.95686 0.95548 0.79786 1.22066 1.02049 0.96563 0.99326 1.22119 0.97971 0.98485 1.02328 1.21879 0.92472 0.99078 1.02952 1.21709 0.99303 0.98955 1.00057 0.89613 0.92713 0.94251 0.89361 0.89209 0.70131 0.94187 0.95278 0.92502 0.93237 0.89093 0.92293 0.92055 0.89584 0.94577 0.88818 0.91521 0.91376 0.95707 0.92053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.44 9.90 71.98 0.71 -2.73 16 2 C -0.05 -1.43 6.00 29.85 0.18 -1.25 16 3 C 0.06 2.12 6.41 41.83 0.27 2.39 16 4 N -0.51 -18.47 11.26 -303.12 -3.41 -21.88 16 5 C 0.19 6.41 13.21 130.42 1.72 8.14 16 6 O -0.16 -6.94 6.86 -7.11 -0.05 -6.99 16 7 C -0.12 -5.12 6.77 24.04 0.16 -4.96 16 8 C 0.60 25.51 6.91 86.46 0.60 26.10 16 9 O -0.55 -22.73 11.07 -4.32 -0.05 -22.78 16 10 N -0.57 -23.97 1.60 -783.67 -1.25 -25.23 16 11 C 0.25 11.68 4.13 85.63 0.35 12.03 16 12 C -0.53 -27.35 8.31 25.60 0.21 -27.14 16 13 H 0.04 2.05 7.81 -2.91 -0.02 2.03 16 14 C 0.03 1.73 5.46 84.65 0.46 2.19 16 15 N -0.91 -49.07 13.29 21.45 0.28 -48.78 16 16 Si 0.94 42.11 29.54 68.60 2.03 44.13 16 17 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 18 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 19 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 20 C 0.17 5.80 0.73 3.61 0.00 5.81 16 21 C -0.14 -4.67 6.83 71.98 0.49 -4.18 16 22 C -0.15 -5.07 8.34 71.98 0.60 -4.47 16 23 C -0.13 -3.74 4.72 30.60 0.14 -3.60 16 24 C -0.14 -4.17 9.42 71.98 0.68 -3.49 16 25 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.09 2.95 6.34 -2.39 -0.02 2.94 16 29 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 30 H 0.28 6.72 8.06 -2.91 -0.02 6.70 16 31 H 0.04 1.97 5.44 -2.39 -0.01 1.96 16 32 H 0.03 1.52 5.39 -2.39 -0.01 1.51 16 33 H 0.27 13.64 8.31 -92.71 -0.77 12.87 16 34 H 0.05 1.90 7.49 -2.39 -0.02 1.88 16 35 H 0.09 2.30 8.14 -2.38 -0.02 2.28 16 36 H 0.06 1.97 5.37 -2.39 -0.01 1.96 16 37 H 0.06 2.19 6.32 -2.39 -0.02 2.18 16 38 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 40 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 41 H 0.07 2.22 6.23 -2.39 -0.01 2.20 16 42 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 43 H 0.02 0.84 7.49 -2.38 -0.02 0.82 16 44 H 0.06 1.69 6.47 -2.39 -0.02 1.68 16 Total: -1.00 -61.34 346.06 5.13 -56.21 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: 0.99 Total: 20.47 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: 6.59 Total: 4.84 kcal Atomic # 7 Polarization: -91.51 SS G_CDS: -4.38 Total: -95.89 kcal Atomic # 8 Polarization: -29.67 SS G_CDS: -0.10 Total: -29.77 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.13 kcal Total: -61.34 5.13 -56.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121194071.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.048 kcal (2) G-P(sol) polarization free energy of solvation -61.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds