Wall clock time and date at job start Tue Mar 31 2020 06:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50693 * 109.47121 * 2 1 4 4 O 1.33652 * 125.80027 * 269.99927 * 3 2 1 5 5 C 1.34217 * 110.91053 * 180.02562 * 4 3 2 6 6 C 1.34175 * 109.12313 * 359.70407 * 5 4 3 7 7 C 1.36413 * 125.80593 * 90.00510 * 3 2 1 8 8 C 1.47375 * 127.19257 * 359.97438 * 7 3 2 9 9 O 1.21625 * 119.99733 * 0.02562 * 8 7 3 10 10 N 1.34777 * 120.00484 * 180.02562 * 8 7 3 11 11 C 1.46495 * 120.00230 * 180.02562 * 10 8 7 12 12 H 1.09004 * 109.47062 * 324.99175 * 11 10 8 13 13 C 1.52999 * 109.47657 * 84.99077 * 11 10 8 14 14 C 1.53002 * 109.47317 * 204.99663 * 11 10 8 15 15 C 1.53003 * 109.47269 * 64.99221 * 14 11 10 16 16 H 1.09000 * 109.46953 * 305.00936 * 15 14 11 17 17 C 1.52996 * 109.47332 * 185.00423 * 15 14 11 18 18 N 1.46505 * 109.46807 * 65.00478 * 15 14 11 19 19 C 1.36931 * 119.99788 * 205.00000 * 18 15 14 20 20 H 1.08002 * 120.00438 * 0.02562 * 19 18 15 21 21 C 1.38817 * 119.99680 * 179.72358 * 19 18 15 22 22 N 1.31614 * 119.99888 * 0.27479 * 21 19 18 23 23 Si 1.86803 * 119.99862 * 180.27671 * 21 19 18 24 24 H 1.48508 * 109.46872 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47141 * 119.99997 * 23 21 19 26 26 H 1.48498 * 109.47018 * 240.00044 * 23 21 19 27 27 H 1.08998 * 109.47016 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47003 * 300.00288 * 1 2 3 29 29 H 1.08990 * 109.47073 * 59.99976 * 1 2 3 30 30 H 1.09002 * 109.47003 * 239.99712 * 2 1 3 31 31 H 1.09000 * 109.46958 * 120.00164 * 2 1 3 32 32 H 1.08007 * 125.43689 * 180.02562 * 5 4 3 33 33 H 1.07997 * 127.02420 * 180.26731 * 6 5 4 34 34 H 0.97000 * 119.99724 * 359.97438 * 10 8 7 35 35 H 1.09005 * 109.46583 * 60.00443 * 13 11 10 36 36 H 1.09001 * 109.47265 * 179.97438 * 13 11 10 37 37 H 1.08991 * 109.47415 * 300.00577 * 13 11 10 38 38 H 1.09000 * 109.46766 * 304.99737 * 14 11 10 39 39 H 1.08992 * 109.47398 * 184.99831 * 14 11 10 40 40 H 1.08998 * 109.47019 * 59.99816 * 17 15 14 41 41 H 1.08998 * 109.47099 * 180.02562 * 17 15 14 42 42 H 1.09002 * 109.46807 * 300.00318 * 17 15 14 43 43 H 0.97000 * 119.99792 * 24.99795 * 18 15 14 44 44 H 0.97005 * 119.99715 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 8 2.2929 2.1578 -1.0840 5 6 2.7258 3.3806 -0.7391 6 6 2.7530 3.4760 0.5990 7 6 2.2984 2.1731 1.1063 8 6 2.1544 1.7670 2.5157 9 8 1.7594 0.6497 2.7892 10 7 2.4604 2.6336 3.5015 11 6 2.3178 2.2297 4.9024 12 1 1.4585 1.5667 5.0036 13 6 3.5830 1.4970 5.3534 14 6 2.1097 3.4709 5.7724 15 6 0.7808 4.1343 5.4050 16 1 0.7633 4.3450 4.3358 17 6 0.6306 5.4418 6.1852 18 7 -0.3244 3.2341 5.7434 19 6 -1.5191 3.3382 5.0825 20 1 -1.6466 4.0837 4.3115 21 6 -2.5644 2.4814 5.3992 22 7 -2.4089 1.5726 6.3384 23 14 -4.1918 2.6184 4.4922 24 1 -4.1099 3.7122 3.4911 25 1 -4.4834 1.3361 3.8025 26 1 -5.2757 2.9162 5.4626 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.0027 4.1644 -1.4286 33 1 3.0507 4.3337 1.1838 34 1 2.7759 3.5246 3.2833 35 1 4.4423 2.1599 5.2521 36 1 3.4770 1.1968 6.3959 37 1 3.7313 0.6128 4.7336 38 1 2.9255 4.1737 5.6037 39 1 2.0923 3.1797 6.8226 40 1 1.4529 6.1116 5.9334 41 1 -0.3162 5.9142 5.9237 42 1 0.6481 5.2310 7.2544 43 1 -0.2098 2.5643 6.4356 44 1 -3.1395 0.9742 6.5599 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134247930.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:05 Heat of formation + Delta-G solvation = -30.464411 kcal Electronic energy + Delta-G solvation = -24567.589074 eV Core-core repulsion = 21100.374688 eV Total energy + Delta-G solvation = -3467.214386 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.54803 -39.24350 -36.76115 -34.49386 -33.81497 -32.89995 -31.98442 -30.43355 -28.70120 -28.53009 -26.28182 -24.27329 -23.55127 -22.91995 -21.53698 -20.38180 -19.71622 -19.49587 -17.84865 -17.11277 -16.24167 -15.80904 -15.66930 -14.81111 -14.67286 -14.25752 -14.20901 -13.87346 -13.61956 -13.45642 -12.98063 -12.89184 -12.68728 -12.58439 -12.19142 -12.10625 -11.94058 -11.69405 -11.58149 -11.41944 -10.99895 -10.89655 -10.80485 -10.57303 -10.37230 -10.16064 -9.83660 -9.76896 -9.58039 -9.51084 -8.83654 -8.68860 -8.47621 -6.86900 -5.68518 -2.95949 1.49307 2.07538 2.80792 3.47875 3.53201 3.55408 3.57829 3.73208 4.48268 4.66297 4.86751 4.91465 5.14558 5.20373 5.35091 5.42633 5.46122 5.53043 5.54731 5.64814 5.70662 5.76369 5.93754 5.94308 5.99737 6.03074 6.05768 6.18047 6.18666 6.28057 6.33777 6.40761 6.42450 6.48992 6.61783 6.78246 6.88454 6.99689 7.05378 7.12020 7.77569 7.92803 8.49958 8.66519 9.61414 10.18985 10.53383 11.54402 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.011404 B = 0.005720 C = 0.004616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2454.694225 B = 4893.859126 C = 6064.480990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.049 4.049 3 C 0.076 3.924 4 O -0.178 6.178 5 C -0.045 4.045 6 C -0.187 4.187 7 C -0.236 4.236 8 C 0.589 3.411 9 O -0.534 6.534 10 N -0.709 5.709 11 C 0.145 3.855 12 H 0.106 0.894 13 C -0.160 4.160 14 C -0.131 4.131 15 C 0.171 3.829 16 H 0.046 0.954 17 C -0.165 4.165 18 N -0.720 5.720 19 C -0.231 4.231 20 H 0.067 0.933 21 C -0.012 4.012 22 N -0.931 5.931 23 Si 0.900 3.100 24 H -0.282 1.282 25 H -0.292 1.292 26 H -0.293 1.293 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.052 0.948 30 H 0.077 0.923 31 H 0.114 0.886 32 H 0.205 0.795 33 H 0.155 0.845 34 H 0.393 0.607 35 H 0.048 0.952 36 H 0.063 0.937 37 H 0.056 0.944 38 H 0.060 0.940 39 H 0.075 0.925 40 H 0.033 0.967 41 H 0.051 0.949 42 H 0.045 0.955 43 H 0.383 0.617 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.524 3.131 -11.127 18.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.086 4.086 3 C 0.023 3.977 4 O -0.074 6.074 5 C -0.111 4.111 6 C -0.206 4.206 7 C -0.240 4.240 8 C 0.376 3.624 9 O -0.412 6.412 10 N -0.359 5.359 11 C 0.041 3.959 12 H 0.124 0.876 13 C -0.219 4.219 14 C -0.169 4.169 15 C 0.061 3.939 16 H 0.064 0.936 17 C -0.225 4.225 18 N -0.361 5.361 19 C -0.363 4.363 20 H 0.085 0.915 21 C -0.208 4.208 22 N -0.580 5.580 23 Si 0.732 3.268 24 H -0.207 1.207 25 H -0.219 1.219 26 H -0.220 1.220 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.071 0.929 30 H 0.096 0.904 31 H 0.132 0.868 32 H 0.222 0.778 33 H 0.173 0.827 34 H 0.226 0.774 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.094 0.906 40 H 0.052 0.948 41 H 0.071 0.929 42 H 0.065 0.935 43 H 0.217 0.783 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 14.056 2.272 -11.312 18.185 hybrid contribution -0.717 0.753 -0.172 1.054 sum 13.338 3.025 -11.485 17.859 Atomic orbital electron populations 1.21709 0.93109 1.02728 1.02789 1.20382 0.97208 0.86302 1.04731 1.22879 0.97167 0.94554 0.83061 1.83746 1.65390 1.23157 1.35152 1.23782 1.04709 0.86272 0.96353 1.22859 1.05508 0.97733 0.94516 1.21282 1.12953 0.95473 0.94327 1.17100 0.76962 0.84804 0.83498 1.90774 1.46135 1.20479 1.83817 1.45737 1.67709 1.16281 1.06167 1.21027 0.98866 0.97032 0.79007 0.87568 1.22183 0.97646 1.00499 1.01542 1.22166 0.98506 0.96290 0.99969 1.20223 0.87037 0.89759 0.96860 0.93643 1.22456 1.00122 0.99074 1.00871 1.42391 1.09615 1.39157 1.44962 1.19197 0.89559 1.13499 1.14012 0.91535 1.24678 0.98239 0.98572 0.99321 1.69656 1.32004 1.22677 1.33657 0.86209 0.84476 0.77168 0.78932 1.20725 1.21904 1.22004 0.91402 0.91153 0.92874 0.90450 0.86778 0.77839 0.82745 0.77382 0.93247 0.91763 0.92518 0.92152 0.90623 0.94767 0.92944 0.93539 0.78349 0.93689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.89 37.16 0.37 -1.64 16 2 C -0.05 -0.65 5.94 -27.89 -0.17 -0.82 16 3 C 0.08 1.10 6.63 -34.97 -0.23 0.86 16 4 O -0.18 -2.28 10.52 7.65 0.08 -2.20 16 5 C -0.05 -0.47 12.03 29.30 0.35 -0.12 16 6 C -0.19 -2.19 10.60 -37.45 -0.40 -2.59 16 7 C -0.24 -3.59 6.31 -103.28 -0.65 -4.24 16 8 C 0.59 10.41 7.78 -12.54 -0.10 10.32 16 9 O -0.53 -11.18 14.51 5.26 0.08 -11.11 16 10 N -0.71 -11.01 4.44 -54.90 -0.24 -11.25 16 11 C 0.14 2.40 2.52 -67.93 -0.17 2.23 16 12 H 0.11 2.30 7.05 -51.93 -0.37 1.93 16 13 C -0.16 -2.26 9.48 37.16 0.35 -1.91 16 14 C -0.13 -2.03 4.29 -26.73 -0.11 -2.14 16 15 C 0.17 3.29 2.84 -67.93 -0.19 3.10 16 16 H 0.05 0.91 7.56 -51.93 -0.39 0.51 16 17 C -0.16 -2.92 9.49 37.16 0.35 -2.56 16 18 N -0.72 -17.84 4.49 -53.42 -0.24 -18.08 16 19 C -0.23 -6.50 9.93 -15.06 -0.15 -6.65 16 20 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 21 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 22 N -0.93 -28.66 13.06 55.49 0.72 -27.94 16 23 Si 0.90 23.13 29.55 -169.99 -5.02 18.11 16 24 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 26 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 27 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.11 1.67 6.49 -51.93 -0.34 1.34 16 32 H 0.21 1.21 8.06 -52.48 -0.42 0.79 16 33 H 0.15 1.40 7.74 -52.49 -0.41 0.99 16 34 H 0.39 5.01 7.77 -40.82 -0.32 4.69 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.38 10.17 7.80 -40.82 -0.32 9.85 16 44 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 367.44 15.07 5.54 5.54 Total: -1.00 -33.57 367.44 -7.11 -40.68 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: -7.18 Total: 12.86 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: -0.84 Total: -6.61 kcal Atomic # 7 Polarization: -57.51 SS G_CDS: 0.24 Total: -57.27 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: 0.16 Total: -13.31 kcal Atomic # 14 Polarization: 23.13 SS G_CDS: -5.02 Total: 18.11 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.57 -7.11 -40.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134247930.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.214 kcal (2) G-P(sol) polarization free energy of solvation -33.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds