Wall clock time and date at job start Tue Mar 31 2020 06:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50693 * 109.47121 * 2 1 4 4 O 1.33652 * 125.80027 * 269.99927 * 3 2 1 5 5 C 1.34217 * 110.91053 * 180.02562 * 4 3 2 6 6 C 1.34175 * 109.12313 * 359.70407 * 5 4 3 7 7 C 1.36413 * 125.80593 * 90.00510 * 3 2 1 8 8 C 1.47375 * 127.19257 * 359.97438 * 7 3 2 9 9 O 1.21625 * 119.99733 * 0.02562 * 8 7 3 10 10 N 1.34777 * 120.00484 * 180.02562 * 8 7 3 11 11 C 1.46495 * 120.00230 * 180.02562 * 10 8 7 12 12 H 1.09004 * 109.47062 * 324.99175 * 11 10 8 13 13 C 1.52999 * 109.47657 * 84.99077 * 11 10 8 14 14 C 1.53002 * 109.47317 * 204.99663 * 11 10 8 15 15 C 1.53003 * 109.47269 * 64.99221 * 14 11 10 16 16 H 1.09000 * 109.46953 * 305.00936 * 15 14 11 17 17 C 1.52996 * 109.47332 * 185.00423 * 15 14 11 18 18 N 1.46505 * 109.46807 * 65.00478 * 15 14 11 19 19 C 1.36931 * 119.99788 * 205.00000 * 18 15 14 20 20 H 1.08002 * 120.00438 * 0.02562 * 19 18 15 21 21 C 1.38817 * 119.99680 * 179.72358 * 19 18 15 22 22 N 1.31614 * 119.99888 * 0.27479 * 21 19 18 23 23 Si 1.86803 * 119.99862 * 180.27671 * 21 19 18 24 24 H 1.48508 * 109.46872 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47141 * 119.99997 * 23 21 19 26 26 H 1.48498 * 109.47018 * 240.00044 * 23 21 19 27 27 H 1.08998 * 109.47016 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47003 * 300.00288 * 1 2 3 29 29 H 1.08990 * 109.47073 * 59.99976 * 1 2 3 30 30 H 1.09002 * 109.47003 * 239.99712 * 2 1 3 31 31 H 1.09000 * 109.46958 * 120.00164 * 2 1 3 32 32 H 1.08007 * 125.43689 * 180.02562 * 5 4 3 33 33 H 1.07997 * 127.02420 * 180.26731 * 6 5 4 34 34 H 0.97000 * 119.99724 * 359.97438 * 10 8 7 35 35 H 1.09005 * 109.46583 * 60.00443 * 13 11 10 36 36 H 1.09001 * 109.47265 * 179.97438 * 13 11 10 37 37 H 1.08991 * 109.47415 * 300.00577 * 13 11 10 38 38 H 1.09000 * 109.46766 * 304.99737 * 14 11 10 39 39 H 1.08992 * 109.47398 * 184.99831 * 14 11 10 40 40 H 1.08998 * 109.47019 * 59.99816 * 17 15 14 41 41 H 1.08998 * 109.47099 * 180.02562 * 17 15 14 42 42 H 1.09002 * 109.46807 * 300.00318 * 17 15 14 43 43 H 0.97000 * 119.99792 * 24.99795 * 18 15 14 44 44 H 0.97005 * 119.99715 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 8 2.2929 2.1578 -1.0840 5 6 2.7258 3.3806 -0.7391 6 6 2.7530 3.4760 0.5990 7 6 2.2984 2.1731 1.1063 8 6 2.1544 1.7670 2.5157 9 8 1.7594 0.6497 2.7892 10 7 2.4604 2.6336 3.5015 11 6 2.3178 2.2297 4.9024 12 1 1.4585 1.5667 5.0036 13 6 3.5830 1.4970 5.3534 14 6 2.1097 3.4709 5.7724 15 6 0.7808 4.1343 5.4050 16 1 0.7633 4.3450 4.3358 17 6 0.6306 5.4418 6.1852 18 7 -0.3244 3.2341 5.7434 19 6 -1.5191 3.3382 5.0825 20 1 -1.6466 4.0837 4.3115 21 6 -2.5644 2.4814 5.3992 22 7 -2.4089 1.5726 6.3384 23 14 -4.1918 2.6184 4.4922 24 1 -4.1099 3.7122 3.4911 25 1 -4.4834 1.3361 3.8025 26 1 -5.2757 2.9162 5.4626 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.0027 4.1644 -1.4286 33 1 3.0507 4.3337 1.1838 34 1 2.7759 3.5246 3.2833 35 1 4.4423 2.1599 5.2521 36 1 3.4770 1.1968 6.3959 37 1 3.7313 0.6128 4.7336 38 1 2.9255 4.1737 5.6037 39 1 2.0923 3.1797 6.8226 40 1 1.4529 6.1116 5.9334 41 1 -0.3162 5.9142 5.9237 42 1 0.6481 5.2310 7.2544 43 1 -0.2098 2.5643 6.4356 44 1 -3.1395 0.9742 6.5599 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134247930.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:04 Heat of formation + Delta-G solvation = -52.928958 kcal Electronic energy + Delta-G solvation = -24568.563210 eV Core-core repulsion = 21100.374688 eV Total energy + Delta-G solvation = -3468.188522 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.52221 -40.59861 -38.28903 -36.09172 -34.95665 -34.18755 -33.66561 -31.77222 -30.42077 -29.68835 -27.59901 -25.72749 -25.35437 -24.00017 -22.65913 -21.72667 -21.15652 -20.69889 -19.30982 -18.78557 -17.30241 -17.14965 -16.83924 -16.58768 -15.85666 -15.67450 -15.65981 -15.30688 -15.24851 -14.66413 -14.50497 -14.22566 -13.91223 -13.62115 -13.59674 -13.35727 -13.28661 -13.15739 -12.95197 -12.81661 -12.67177 -12.51556 -12.24082 -12.16124 -11.99521 -11.82591 -11.56204 -11.41988 -10.94625 -10.88732 -10.78727 -9.96967 -9.51247 -8.94671 -7.92548 -5.17487 0.37416 1.17987 1.40509 1.42547 1.50743 1.84902 2.34590 2.47053 2.55234 3.41956 3.58498 3.77519 3.88227 3.93058 4.02623 4.13150 4.15119 4.26410 4.40919 4.42896 4.54791 4.61464 4.69210 4.75117 4.79069 4.83833 4.89522 4.94107 5.00691 5.04074 5.09782 5.10613 5.23771 5.25723 5.35203 5.42752 5.43702 5.51860 5.63322 5.69704 6.07216 6.31015 6.68984 7.36624 7.37996 8.16968 8.36841 9.31519 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.011404 B = 0.005720 C = 0.004616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2454.694225 B = 4893.859126 C = 6064.480990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.048 4.048 3 C 0.063 3.937 4 O -0.180 6.180 5 C -0.029 4.029 6 C -0.197 4.197 7 C -0.265 4.265 8 C 0.578 3.422 9 O -0.581 6.581 10 N -0.697 5.697 11 C 0.147 3.853 12 H 0.047 0.953 13 C -0.150 4.150 14 C -0.117 4.117 15 C 0.163 3.837 16 H 0.040 0.960 17 C -0.155 4.155 18 N -0.731 5.731 19 C -0.223 4.223 20 H 0.067 0.933 21 C -0.078 4.078 22 N -0.968 5.968 23 Si 0.958 3.042 24 H -0.268 1.268 25 H -0.300 1.300 26 H -0.291 1.291 27 H 0.080 0.920 28 H 0.026 0.974 29 H 0.067 0.933 30 H 0.108 0.892 31 H 0.092 0.908 32 H 0.253 0.747 33 H 0.182 0.818 34 H 0.409 0.591 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.036 0.964 38 H 0.106 0.894 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.028 0.972 42 H 0.042 0.958 43 H 0.370 0.630 44 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.530 5.743 -12.801 21.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.085 4.085 3 C 0.010 3.990 4 O -0.076 6.076 5 C -0.094 4.094 6 C -0.216 4.216 7 C -0.269 4.269 8 C 0.367 3.633 9 O -0.463 6.463 10 N -0.348 5.348 11 C 0.043 3.957 12 H 0.065 0.935 13 C -0.208 4.208 14 C -0.156 4.156 15 C 0.056 3.944 16 H 0.058 0.942 17 C -0.215 4.215 18 N -0.371 5.371 19 C -0.355 4.355 20 H 0.085 0.915 21 C -0.270 4.270 22 N -0.620 5.620 23 Si 0.789 3.211 24 H -0.192 1.192 25 H -0.228 1.228 26 H -0.218 1.218 27 H 0.099 0.901 28 H 0.045 0.955 29 H 0.086 0.914 30 H 0.127 0.873 31 H 0.110 0.890 32 H 0.269 0.731 33 H 0.199 0.801 34 H 0.245 0.755 35 H 0.100 0.900 36 H 0.089 0.911 37 H 0.056 0.944 38 H 0.124 0.876 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.048 0.952 42 H 0.062 0.938 43 H 0.202 0.798 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 16.108 4.971 -13.005 21.291 hybrid contribution -1.249 0.018 0.293 1.283 sum 14.859 4.989 -12.712 20.182 Atomic orbital electron populations 1.21651 0.93774 1.03166 1.01209 1.20325 0.96557 0.86506 1.05134 1.22979 0.97515 0.95039 0.83503 1.83765 1.65305 1.24087 1.34434 1.24745 1.02038 0.85762 0.96830 1.23165 1.06046 0.97010 0.95380 1.21351 1.14671 0.97845 0.93045 1.17609 0.76269 0.84420 0.84965 1.90746 1.48291 1.22518 1.84712 1.45618 1.66982 1.16748 1.05454 1.20843 0.97964 0.96930 0.79985 0.93465 1.22075 0.97300 1.00057 1.01390 1.22075 0.97644 0.96219 0.99617 1.20517 0.87140 0.89968 0.96823 0.94202 1.22297 1.00668 0.98324 1.00218 1.42591 1.10250 1.39911 1.44337 1.19513 0.90649 1.12284 1.13100 0.91475 1.25409 1.01587 0.99129 1.00835 1.69803 1.32611 1.23937 1.35639 0.85277 0.80888 0.76950 0.78025 1.19234 1.22753 1.21804 0.90068 0.95482 0.91396 0.87345 0.88979 0.73073 0.80097 0.75458 0.90046 0.91066 0.94432 0.87552 0.90430 0.90431 0.95225 0.93843 0.79819 0.94380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.01 9.89 71.98 0.71 -3.30 16 2 C -0.05 -1.31 5.94 29.85 0.18 -1.13 16 3 C 0.06 1.79 6.63 25.26 0.17 1.95 16 4 O -0.18 -4.20 10.52 4.45 0.05 -4.15 16 5 C -0.03 -0.49 12.03 66.89 0.80 0.31 16 6 C -0.20 -4.09 10.60 23.65 0.25 -3.84 16 7 C -0.26 -7.98 6.31 -18.99 -0.12 -8.10 16 8 C 0.58 21.11 7.78 86.65 0.67 21.79 16 9 O -0.58 -26.14 14.51 -4.11 -0.06 -26.20 16 10 N -0.70 -21.35 4.44 -445.84 -1.98 -23.33 16 11 C 0.15 4.89 2.52 44.99 0.11 5.01 16 12 H 0.05 2.17 7.05 -2.38 -0.02 2.15 16 13 C -0.15 -4.10 9.48 71.98 0.68 -3.42 16 14 C -0.12 -3.40 4.29 30.60 0.13 -3.26 16 15 C 0.16 6.10 2.84 44.99 0.13 6.23 16 16 H 0.04 1.54 7.56 -2.39 -0.02 1.52 16 17 C -0.16 -5.12 9.49 71.98 0.68 -4.43 16 18 N -0.73 -36.96 4.49 -322.93 -1.45 -38.41 16 19 C -0.22 -12.78 9.93 84.04 0.83 -11.95 16 20 H 0.07 3.77 7.83 -2.91 -0.02 3.74 16 21 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 22 N -0.97 -61.90 13.06 21.65 0.28 -61.62 16 23 Si 0.96 48.75 29.55 68.60 2.03 50.78 16 24 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 25 H -0.30 -15.50 7.11 99.48 0.71 -14.80 16 26 H -0.29 -14.58 7.11 99.48 0.71 -13.87 16 27 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.09 2.90 6.49 -2.39 -0.02 2.89 16 32 H 0.25 1.58 8.06 -2.91 -0.02 1.56 16 33 H 0.18 2.59 7.74 -2.91 -0.02 2.57 16 34 H 0.41 9.53 7.77 -92.71 -0.72 8.81 16 35 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 36 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.37 20.41 7.80 -92.71 -0.72 19.69 16 44 H 0.25 15.42 8.31 -92.70 -0.77 14.64 16 Total: -1.00 -78.43 367.44 4.13 -74.30 By element: Atomic # 1 Polarization: 37.43 SS G_CDS: -0.45 Total: 36.98 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: 5.71 Total: -8.34 kcal Atomic # 7 Polarization: -120.21 SS G_CDS: -3.15 Total: -123.36 kcal Atomic # 8 Polarization: -30.34 SS G_CDS: -0.01 Total: -30.35 kcal Atomic # 14 Polarization: 48.75 SS G_CDS: 2.03 Total: 50.78 kcal Total: -78.43 4.13 -74.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134247930.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.373 kcal (2) G-P(sol) polarization free energy of solvation -78.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds