Wall clock time and date at job start Tue Mar 31 2020 06:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34181 * 127.02185 * 2 1 4 4 O 1.34205 * 109.12597 * 180.26506 * 3 2 1 5 5 C 1.33652 * 110.90921 * 359.74594 * 4 3 2 6 6 C 1.50700 * 125.80753 * 179.97438 * 5 4 3 7 7 C 1.36422 * 108.39458 * 0.02562 * 5 4 3 8 8 C 1.47384 * 127.19084 * 179.97438 * 7 5 4 9 9 O 1.21606 * 120.00099 * 90.02311 * 8 7 5 10 10 N 1.34779 * 119.99376 * 270.01808 * 8 7 5 11 11 C 1.46496 * 119.99550 * 180.02562 * 10 8 7 12 12 H 1.09004 * 109.47509 * 324.99724 * 11 10 8 13 13 C 1.52999 * 109.47410 * 85.00095 * 11 10 8 14 14 C 1.52998 * 109.47164 * 205.00192 * 11 10 8 15 15 C 1.52998 * 109.47384 * 64.99625 * 14 11 10 16 16 H 1.09003 * 109.47082 * 305.00221 * 15 14 11 17 17 C 1.52995 * 109.47443 * 185.00170 * 15 14 11 18 18 N 1.46498 * 109.47009 * 65.00045 * 15 14 11 19 19 C 1.36935 * 120.00239 * 204.99963 * 18 15 14 20 20 H 1.08004 * 120.00069 * 0.02562 * 19 18 15 21 21 C 1.38811 * 120.00368 * 180.02562 * 19 18 15 22 22 N 1.31624 * 119.99540 * 359.72375 * 21 19 18 23 23 Si 1.86800 * 120.00451 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47364 * 179.72253 * 23 21 19 25 25 H 1.48508 * 109.46883 * 299.72375 * 23 21 19 26 26 H 1.48497 * 109.46870 * 59.72186 * 23 21 19 27 27 H 1.08992 * 109.47169 * 270.13751 * 1 2 3 28 28 H 1.09003 * 109.47242 * 30.13597 * 1 2 3 29 29 H 1.09000 * 109.46886 * 150.13259 * 1 2 3 30 30 H 1.08000 * 125.43700 * 0.02562 * 3 2 1 31 31 H 1.08991 * 109.47535 * 270.00428 * 6 5 4 32 32 H 1.09001 * 109.46860 * 30.00405 * 6 5 4 33 33 H 1.09000 * 109.47170 * 149.99887 * 6 5 4 34 34 H 0.96994 * 120.00258 * 0.02562 * 10 8 7 35 35 H 1.08996 * 109.47126 * 60.00048 * 13 11 10 36 36 H 1.09004 * 109.47346 * 179.97438 * 13 11 10 37 37 H 1.09003 * 109.47191 * 299.99550 * 13 11 10 38 38 H 1.08997 * 109.46877 * 305.00014 * 14 11 10 39 39 H 1.08999 * 109.47306 * 185.00166 * 14 11 10 40 40 H 1.08996 * 109.47329 * 300.00343 * 17 15 14 41 41 H 1.09003 * 109.46933 * 60.00266 * 17 15 14 42 42 H 1.09004 * 109.47411 * 179.97438 * 17 15 14 43 43 H 0.97004 * 119.99747 * 25.00702 * 18 15 14 44 44 H 0.97000 * 120.00481 * 0.27542 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0713 0.0000 4 8 3.5920 0.6589 -0.0059 5 6 3.6623 -0.6758 -0.0043 6 6 4.9291 -1.4920 -0.0101 7 6 2.3922 -1.1737 0.0022 8 6 1.9914 -2.5920 0.0056 9 8 1.8306 -3.1759 1.0601 10 7 1.8029 -3.2416 -1.1602 11 6 1.4039 -4.6512 -1.1569 12 1 1.8757 -5.1605 -0.3166 13 6 -0.1171 -4.7505 -1.0247 14 6 1.8461 -5.3094 -2.4654 15 6 3.3742 -5.3214 -2.5394 16 1 3.7521 -4.3067 -2.4139 17 6 3.8148 -5.8651 -3.8999 18 7 3.9079 -6.1761 -1.4759 19 6 5.1755 -5.9681 -1.0016 20 1 5.7818 -5.1737 -1.4112 21 6 5.6814 -6.7783 0.0057 22 7 4.9405 -7.7430 0.5086 23 14 7.4103 -6.4941 0.6532 24 1 7.7070 -7.4811 1.7224 25 1 8.3865 -6.6556 -0.4543 26 1 7.5120 -5.1197 1.2063 27 1 -0.3633 0.0025 1.0276 28 1 -0.3634 0.8888 -0.5160 29 1 -0.3633 -0.8912 -0.5118 30 1 1.9894 2.1011 0.0004 31 1 5.2290 -1.6902 -1.0390 32 1 5.7194 -0.9399 0.4987 33 1 4.7554 -2.4361 0.5061 34 1 1.9314 -2.7759 -2.0012 35 1 -0.5889 -4.2413 -1.8650 36 1 -0.4140 -5.7993 -1.0227 37 1 -0.4321 -4.2816 -0.0924 38 1 1.4460 -4.7464 -3.3086 39 1 1.4725 -6.3327 -2.5017 40 1 3.4370 -6.8797 -4.0254 41 1 3.4177 -5.2291 -4.6912 42 1 4.9035 -5.8732 -3.9528 43 1 3.3633 -6.8895 -1.1079 44 1 4.0426 -7.8904 0.1726 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134287775.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:34 Heat of formation + Delta-G solvation = -29.685323 kcal Electronic energy + Delta-G solvation = -24758.120559 eV Core-core repulsion = 21290.939957 eV Total energy + Delta-G solvation = -3467.180602 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.52419 -39.33351 -36.86539 -34.55427 -33.94891 -32.54315 -32.19510 -30.54588 -28.30909 -28.07584 -26.50589 -26.32979 -23.59166 -23.26586 -20.95878 -20.03694 -19.84260 -19.62966 -17.72255 -17.29228 -16.40246 -15.82471 -15.63963 -14.88149 -14.71235 -14.20260 -13.89783 -13.67247 -13.55692 -13.33309 -13.16459 -13.12524 -12.88590 -12.79965 -12.59882 -12.37123 -12.14898 -12.07067 -11.69965 -11.68606 -11.33818 -11.01083 -10.72347 -10.48331 -10.45151 -10.08805 -9.93383 -9.74418 -9.37046 -9.11260 -8.86326 -8.71187 -8.45558 -6.96766 -6.02719 -3.02204 1.66118 2.22262 2.85082 2.88862 3.53335 3.56023 3.57321 3.74737 4.49136 4.71802 4.79615 4.93349 5.03905 5.17572 5.35062 5.36655 5.42125 5.49780 5.59349 5.62237 5.66108 5.67228 5.71955 5.77716 5.83128 5.89299 5.94902 5.97828 6.06788 6.22543 6.25898 6.30855 6.35012 6.38946 6.48799 6.63260 6.78004 6.88913 7.01412 7.08388 7.81548 7.84851 8.56097 8.82014 9.29456 10.15754 10.30970 11.45593 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.013213 B = 0.005576 C = 0.004569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.588884 B = 5020.419469 C = 6127.052468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.150 4.150 3 C -0.048 4.048 4 O -0.175 6.175 5 C 0.052 3.948 6 C -0.084 4.084 7 C -0.230 4.230 8 C 0.594 3.406 9 O -0.526 6.526 10 N -0.707 5.707 11 C 0.144 3.856 12 H 0.102 0.898 13 C -0.161 4.161 14 C -0.132 4.132 15 C 0.177 3.823 16 H 0.047 0.953 17 C -0.165 4.165 18 N -0.731 5.731 19 C -0.325 4.325 20 H 0.061 0.939 21 C -0.043 4.043 22 N -0.943 5.943 23 Si 1.074 2.926 24 H -0.285 1.285 25 H -0.297 1.297 26 H -0.296 1.296 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.204 0.796 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.101 0.899 34 H 0.395 0.605 35 H 0.050 0.950 36 H 0.064 0.936 37 H 0.056 0.944 38 H 0.062 0.938 39 H 0.074 0.926 40 H 0.044 0.956 41 H 0.035 0.965 42 H 0.052 0.948 43 H 0.365 0.635 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.662 16.179 -6.485 19.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.152 4.152 3 C -0.114 4.114 4 O -0.072 6.072 5 C 0.000 4.000 6 C -0.140 4.140 7 C -0.234 4.234 8 C 0.379 3.621 9 O -0.402 6.402 10 N -0.358 5.358 11 C 0.040 3.960 12 H 0.120 0.880 13 C -0.219 4.219 14 C -0.171 4.171 15 C 0.067 3.933 16 H 0.065 0.935 17 C -0.225 4.225 18 N -0.374 5.374 19 C -0.456 4.456 20 H 0.079 0.921 21 C -0.241 4.241 22 N -0.588 5.588 23 Si 0.906 3.094 24 H -0.211 1.211 25 H -0.224 1.224 26 H -0.223 1.223 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.221 0.779 31 H 0.108 0.892 32 H 0.100 0.900 33 H 0.119 0.881 34 H 0.229 0.771 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.092 0.908 40 H 0.063 0.937 41 H 0.054 0.946 42 H 0.072 0.928 43 H 0.199 0.801 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.250 15.553 -4.686 17.788 hybrid contribution -1.400 0.573 -1.511 2.138 sum -8.650 16.126 -6.196 19.320 Atomic orbital electron populations 1.20161 0.88861 1.02540 1.02447 1.21316 0.96642 0.90735 1.06464 1.23535 0.79879 0.99329 1.08640 1.83715 1.29418 1.22187 1.71877 1.22717 0.96413 0.80399 1.00463 1.20530 0.90667 0.98296 1.04511 1.21102 0.93070 0.94194 1.15056 1.17187 0.76531 0.84374 0.84049 1.90823 1.50356 1.67801 1.31231 1.45950 1.69746 1.12235 1.07865 1.21020 0.93827 0.80784 1.00385 0.87997 1.22187 0.96161 1.01992 1.01606 1.22188 0.98211 1.00914 0.95778 1.20148 0.89973 0.94710 0.88427 0.93493 1.22440 1.01673 1.00161 0.98214 1.42403 1.15518 1.37468 1.42051 1.19925 0.91534 1.15618 1.18533 0.92115 1.25645 1.05830 0.96075 0.96581 1.70869 1.10549 1.32712 1.44708 0.83322 0.74604 0.75443 0.76068 1.21082 1.22432 1.22329 0.91136 0.91358 0.91499 0.77950 0.89178 0.90013 0.88053 0.77144 0.93048 0.91749 0.92473 0.91917 0.90756 0.93684 0.94644 0.92849 0.80128 0.93402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.84 10.38 36.01 0.37 -0.47 16 2 C -0.15 -1.90 6.38 -102.50 -0.65 -2.56 16 3 C -0.05 -0.53 11.96 29.30 0.35 -0.18 16 4 O -0.18 -2.33 10.52 7.68 0.08 -2.25 16 5 C 0.05 0.77 7.37 -34.96 -0.26 0.51 16 6 C -0.08 -1.19 10.24 36.01 0.37 -0.82 16 7 C -0.23 -3.61 6.07 -103.28 -0.63 -4.23 16 8 C 0.59 10.71 7.22 -12.54 -0.09 10.62 16 9 O -0.53 -11.91 16.77 5.27 0.09 -11.82 16 10 N -0.71 -10.96 4.44 -54.90 -0.24 -11.21 16 11 C 0.14 2.36 2.52 -67.93 -0.17 2.19 16 12 H 0.10 2.18 7.05 -51.93 -0.37 1.81 16 13 C -0.16 -2.24 9.48 37.16 0.35 -1.89 16 14 C -0.13 -2.01 4.29 -26.73 -0.11 -2.13 16 15 C 0.18 3.34 2.84 -67.93 -0.19 3.15 16 16 H 0.05 0.91 7.56 -51.93 -0.39 0.52 16 17 C -0.16 -2.88 9.49 37.16 0.35 -2.53 16 18 N -0.73 -17.63 4.49 -53.43 -0.24 -17.87 16 19 C -0.32 -8.91 9.93 -15.06 -0.15 -9.06 16 20 H 0.06 1.64 7.83 -52.48 -0.41 1.23 16 21 C -0.04 -1.26 5.50 -17.43 -0.10 -1.36 16 22 N -0.94 -29.37 13.70 55.49 0.76 -28.61 16 23 Si 1.07 26.18 29.92 -169.99 -5.09 21.09 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 H -0.30 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.30 -6.87 7.11 56.52 0.40 -6.47 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.20 1.34 8.06 -52.49 -0.42 0.92 16 31 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.10 1.74 7.93 -51.93 -0.41 1.33 16 34 H 0.39 5.14 8.59 -40.82 -0.35 4.79 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 43 H 0.37 9.28 6.63 -40.82 -0.27 9.01 16 44 H 0.25 7.83 6.77 -40.82 -0.28 7.55 16 LS Contribution 371.10 15.07 5.59 5.59 Total: -1.00 -34.41 371.10 -6.80 -41.20 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: -7.19 Total: 12.62 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: -0.56 Total: -8.76 kcal Atomic # 7 Polarization: -57.96 SS G_CDS: 0.28 Total: -57.69 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: 0.17 Total: -14.07 kcal Atomic # 14 Polarization: 26.18 SS G_CDS: -5.09 Total: 21.09 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.41 -6.80 -41.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134287775.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.517 kcal (2) G-P(sol) polarization free energy of solvation -34.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds