Wall clock time and date at job start Tue Mar 31 2020 06:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34181 * 127.02185 * 2 1 4 4 O 1.34205 * 109.12597 * 180.26506 * 3 2 1 5 5 C 1.33652 * 110.90921 * 359.74594 * 4 3 2 6 6 C 1.50700 * 125.80753 * 179.97438 * 5 4 3 7 7 C 1.36422 * 108.39458 * 0.02562 * 5 4 3 8 8 C 1.47384 * 127.19084 * 179.97438 * 7 5 4 9 9 O 1.21606 * 120.00099 * 90.02311 * 8 7 5 10 10 N 1.34779 * 119.99376 * 270.01808 * 8 7 5 11 11 C 1.46496 * 119.99550 * 180.02562 * 10 8 7 12 12 H 1.09004 * 109.47509 * 324.99724 * 11 10 8 13 13 C 1.52999 * 109.47410 * 85.00095 * 11 10 8 14 14 C 1.52998 * 109.47164 * 205.00192 * 11 10 8 15 15 C 1.52998 * 109.47384 * 64.99625 * 14 11 10 16 16 H 1.09003 * 109.47082 * 305.00221 * 15 14 11 17 17 C 1.52995 * 109.47443 * 185.00170 * 15 14 11 18 18 N 1.46498 * 109.47009 * 65.00045 * 15 14 11 19 19 C 1.36935 * 120.00239 * 204.99963 * 18 15 14 20 20 H 1.08004 * 120.00069 * 0.02562 * 19 18 15 21 21 C 1.38811 * 120.00368 * 180.02562 * 19 18 15 22 22 N 1.31624 * 119.99540 * 359.72375 * 21 19 18 23 23 Si 1.86800 * 120.00451 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47364 * 179.72253 * 23 21 19 25 25 H 1.48508 * 109.46883 * 299.72375 * 23 21 19 26 26 H 1.48497 * 109.46870 * 59.72186 * 23 21 19 27 27 H 1.08992 * 109.47169 * 270.13751 * 1 2 3 28 28 H 1.09003 * 109.47242 * 30.13597 * 1 2 3 29 29 H 1.09000 * 109.46886 * 150.13259 * 1 2 3 30 30 H 1.08000 * 125.43700 * 0.02562 * 3 2 1 31 31 H 1.08991 * 109.47535 * 270.00428 * 6 5 4 32 32 H 1.09001 * 109.46860 * 30.00405 * 6 5 4 33 33 H 1.09000 * 109.47170 * 149.99887 * 6 5 4 34 34 H 0.96994 * 120.00258 * 0.02562 * 10 8 7 35 35 H 1.08996 * 109.47126 * 60.00048 * 13 11 10 36 36 H 1.09004 * 109.47346 * 179.97438 * 13 11 10 37 37 H 1.09003 * 109.47191 * 299.99550 * 13 11 10 38 38 H 1.08997 * 109.46877 * 305.00014 * 14 11 10 39 39 H 1.08999 * 109.47306 * 185.00166 * 14 11 10 40 40 H 1.08996 * 109.47329 * 300.00343 * 17 15 14 41 41 H 1.09003 * 109.46933 * 60.00266 * 17 15 14 42 42 H 1.09004 * 109.47411 * 179.97438 * 17 15 14 43 43 H 0.97004 * 119.99747 * 25.00702 * 18 15 14 44 44 H 0.97000 * 120.00481 * 0.27542 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0713 0.0000 4 8 3.5920 0.6589 -0.0059 5 6 3.6623 -0.6758 -0.0043 6 6 4.9291 -1.4920 -0.0101 7 6 2.3922 -1.1737 0.0022 8 6 1.9914 -2.5920 0.0056 9 8 1.8306 -3.1759 1.0601 10 7 1.8029 -3.2416 -1.1602 11 6 1.4039 -4.6512 -1.1569 12 1 1.8757 -5.1605 -0.3166 13 6 -0.1171 -4.7505 -1.0247 14 6 1.8461 -5.3094 -2.4654 15 6 3.3742 -5.3214 -2.5394 16 1 3.7521 -4.3067 -2.4139 17 6 3.8148 -5.8651 -3.8999 18 7 3.9079 -6.1761 -1.4759 19 6 5.1755 -5.9681 -1.0016 20 1 5.7818 -5.1737 -1.4112 21 6 5.6814 -6.7783 0.0057 22 7 4.9405 -7.7430 0.5086 23 14 7.4103 -6.4941 0.6532 24 1 7.7070 -7.4811 1.7224 25 1 8.3865 -6.6556 -0.4543 26 1 7.5120 -5.1197 1.2063 27 1 -0.3633 0.0025 1.0276 28 1 -0.3634 0.8888 -0.5160 29 1 -0.3633 -0.8912 -0.5118 30 1 1.9894 2.1011 0.0004 31 1 5.2290 -1.6902 -1.0390 32 1 5.7194 -0.9399 0.4987 33 1 4.7554 -2.4361 0.5061 34 1 1.9314 -2.7759 -2.0012 35 1 -0.5889 -4.2413 -1.8650 36 1 -0.4140 -5.7993 -1.0227 37 1 -0.4321 -4.2816 -0.0924 38 1 1.4460 -4.7464 -3.3086 39 1 1.4725 -6.3327 -2.5017 40 1 3.4370 -6.8797 -4.0254 41 1 3.4177 -5.2291 -4.6912 42 1 4.9035 -5.8732 -3.9528 43 1 3.3633 -6.8895 -1.1079 44 1 4.0426 -7.8904 0.1726 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134287775.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:33 Heat of formation + Delta-G solvation = -52.991905 kcal Electronic energy + Delta-G solvation = -24759.131208 eV Core-core repulsion = 21290.939957 eV Total energy + Delta-G solvation = -3468.191252 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.55572 -40.75362 -38.43863 -36.25287 -34.97112 -34.14482 -33.54645 -31.91697 -30.16600 -29.06797 -27.70871 -27.41233 -25.54644 -24.68086 -22.33067 -21.38818 -21.22714 -20.68422 -19.44548 -18.77161 -17.60940 -17.07289 -16.92958 -16.53487 -16.09222 -15.92481 -15.46327 -15.13737 -14.80516 -14.65920 -14.40579 -14.19610 -14.17966 -13.85351 -13.63047 -13.58031 -13.44759 -13.31533 -13.17995 -12.95217 -12.77085 -12.53076 -12.32060 -12.19834 -11.92697 -11.87550 -11.59141 -11.19974 -11.15264 -10.88332 -10.46637 -10.11080 -9.46142 -9.03549 -8.31549 -5.23334 0.59157 1.23190 1.48271 1.54370 1.65085 1.80040 1.83921 2.30864 2.73253 3.47195 3.50623 3.66664 3.76596 3.87566 3.93864 4.06271 4.17777 4.27899 4.33599 4.44598 4.48337 4.59212 4.61383 4.69603 4.73444 4.74443 4.74809 4.83656 4.92968 4.96272 5.00715 5.01025 5.12625 5.14623 5.24460 5.32654 5.48166 5.52478 5.54087 5.66699 6.05739 6.51001 6.55714 7.17608 7.21630 8.08357 8.20208 9.20691 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.013213 B = 0.005576 C = 0.004569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.588884 B = 5020.419469 C = 6127.052468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.168 4.168 3 C -0.026 4.026 4 O -0.175 6.175 5 C 0.040 3.960 6 C -0.080 4.080 7 C -0.256 4.256 8 C 0.593 3.407 9 O -0.586 6.586 10 N -0.692 5.692 11 C 0.146 3.854 12 H 0.044 0.956 13 C -0.151 4.151 14 C -0.119 4.119 15 C 0.169 3.831 16 H 0.042 0.958 17 C -0.155 4.155 18 N -0.743 5.743 19 C -0.311 4.311 20 H 0.064 0.936 21 C -0.109 4.109 22 N -0.981 5.981 23 Si 1.116 2.884 24 H -0.298 1.298 25 H -0.275 1.275 26 H -0.280 1.280 27 H 0.066 0.934 28 H 0.103 0.897 29 H 0.055 0.945 30 H 0.253 0.747 31 H 0.100 0.900 32 H 0.102 0.898 33 H 0.061 0.939 34 H 0.410 0.590 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.036 0.964 38 H 0.107 0.893 39 H 0.078 0.922 40 H 0.041 0.959 41 H 0.076 0.924 42 H 0.029 0.971 43 H 0.355 0.645 44 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.359 19.130 -8.871 23.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.169 4.169 3 C -0.091 4.091 4 O -0.072 6.072 5 C -0.011 4.011 6 C -0.136 4.136 7 C -0.260 4.260 8 C 0.379 3.621 9 O -0.466 6.466 10 N -0.342 5.342 11 C 0.041 3.959 12 H 0.062 0.938 13 C -0.209 4.209 14 C -0.157 4.157 15 C 0.061 3.939 16 H 0.060 0.940 17 C -0.215 4.215 18 N -0.385 5.385 19 C -0.443 4.443 20 H 0.082 0.918 21 C -0.300 4.300 22 N -0.630 5.630 23 Si 0.942 3.058 24 H -0.224 1.224 25 H -0.201 1.201 26 H -0.207 1.207 27 H 0.085 0.915 28 H 0.121 0.879 29 H 0.074 0.926 30 H 0.269 0.731 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.080 0.920 34 H 0.247 0.753 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.056 0.944 38 H 0.125 0.875 39 H 0.096 0.904 40 H 0.060 0.940 41 H 0.095 0.905 42 H 0.048 0.952 43 H 0.187 0.813 44 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -7.961 18.553 -7.174 21.426 hybrid contribution -1.249 -0.242 -0.841 1.525 sum -9.210 18.311 -8.015 22.008 Atomic orbital electron populations 1.20216 0.87186 1.03735 1.02586 1.21640 0.97916 0.89826 1.07566 1.24468 0.78415 1.00870 1.05390 1.83732 1.30783 1.20991 1.71660 1.22649 0.96050 0.81266 1.01181 1.20422 0.91481 0.96837 1.04889 1.21164 0.94606 0.93630 1.16609 1.17613 0.75458 0.85364 0.83657 1.90787 1.53198 1.69323 1.33311 1.45841 1.68551 1.11844 1.08013 1.20883 0.95256 0.80732 0.99002 0.93760 1.22086 0.94013 1.02871 1.01950 1.22097 0.95364 1.01805 0.96433 1.20438 0.92384 0.93364 0.87679 0.94030 1.22285 1.00215 1.00828 0.98137 1.42622 1.14556 1.37988 1.43364 1.20248 0.92597 1.14272 1.17172 0.91809 1.26945 1.08926 0.96312 0.97799 1.70979 1.10516 1.34936 1.46558 0.82782 0.71478 0.75658 0.75879 1.22419 1.20075 1.20682 0.91534 0.87867 0.92563 0.73090 0.88123 0.87941 0.91996 0.75332 0.89750 0.90888 0.94442 0.87492 0.90374 0.93970 0.90476 0.95177 0.81303 0.94781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.45 10.38 71.24 0.74 -0.71 16 2 C -0.17 -3.93 6.38 -18.49 -0.12 -4.05 16 3 C -0.03 -0.49 11.96 66.89 0.80 0.31 16 4 O -0.18 -4.25 10.52 4.57 0.05 -4.20 16 5 C 0.04 1.18 7.37 25.26 0.19 1.36 16 6 C -0.08 -2.30 10.24 71.24 0.73 -1.57 16 7 C -0.26 -8.00 6.07 -18.99 -0.12 -8.11 16 8 C 0.59 22.15 7.22 86.65 0.63 22.78 16 9 O -0.59 -28.33 16.77 -4.05 -0.07 -28.39 16 10 N -0.69 -21.41 4.44 -445.85 -1.98 -23.39 16 11 C 0.15 4.81 2.52 44.99 0.11 4.92 16 12 H 0.04 2.01 7.05 -2.39 -0.02 2.00 16 13 C -0.15 -4.08 9.48 71.98 0.68 -3.39 16 14 C -0.12 -3.40 4.29 30.59 0.13 -3.27 16 15 C 0.17 6.24 2.84 44.99 0.13 6.36 16 16 H 0.04 1.58 7.56 -2.39 -0.02 1.56 16 17 C -0.15 -5.09 9.49 71.98 0.68 -4.41 16 18 N -0.74 -36.77 4.49 -322.95 -1.45 -38.22 16 19 C -0.31 -17.45 9.93 84.03 0.83 -16.61 16 20 H 0.06 3.47 7.83 -2.91 -0.02 3.45 16 21 C -0.11 -6.49 5.50 84.86 0.47 -6.02 16 22 N -0.98 -63.67 13.70 21.65 0.30 -63.38 16 23 Si 1.12 53.84 29.92 68.60 2.05 55.89 16 24 H -0.30 -14.89 7.11 99.48 0.71 -14.18 16 25 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 26 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 27 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.25 1.92 8.06 -2.91 -0.02 1.90 16 31 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 32 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.06 2.26 7.93 -2.39 -0.02 2.25 16 34 H 0.41 10.04 8.59 -92.71 -0.80 9.24 16 35 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 40 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.03 1.11 8.14 -2.38 -0.02 1.09 16 43 H 0.36 18.89 6.63 -92.71 -0.61 18.27 16 44 H 0.24 15.69 6.77 -92.71 -0.63 15.06 16 Total: -1.00 -80.66 371.10 4.51 -76.15 By element: Atomic # 1 Polarization: 38.22 SS G_CDS: -0.27 Total: 37.95 kcal Atomic # 6 Polarization: -18.29 SS G_CDS: 5.89 Total: -12.40 kcal Atomic # 7 Polarization: -121.85 SS G_CDS: -3.13 Total: -124.99 kcal Atomic # 8 Polarization: -32.58 SS G_CDS: -0.02 Total: -32.60 kcal Atomic # 14 Polarization: 53.84 SS G_CDS: 2.05 Total: 55.89 kcal Total: -80.66 4.51 -76.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134287775.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.158 kcal (2) G-P(sol) polarization free energy of solvation -80.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds