Wall clock time and date at job start Tue Mar 31 2020 06:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50699 * 109.47095 * 2 1 4 4 C 1.35131 * 125.61410 * 89.99917 * 3 2 1 5 5 C 1.40372 * 107.11412 * 179.97438 * 4 3 2 6 6 C 1.36551 * 106.70578 * 0.02562 * 5 4 3 7 7 C 1.46654 * 125.98669 * 180.02562 * 6 5 4 8 8 O 1.21699 * 119.99796 * 354.83363 * 7 6 5 9 9 N 1.34776 * 120.00300 * 174.83553 * 7 6 5 10 10 C 1.46494 * 120.00281 * 184.55550 * 9 7 6 11 11 H 1.09001 * 109.47338 * 35.39631 * 10 9 7 12 12 C 1.53008 * 109.46778 * 275.40005 * 10 9 7 13 13 C 1.52994 * 109.47419 * 155.40342 * 10 9 7 14 14 C 1.53003 * 109.46883 * 296.84853 * 13 10 9 15 15 H 1.09000 * 109.47408 * 54.52007 * 14 13 10 16 16 C 1.53001 * 109.47211 * 294.51605 * 14 13 10 17 17 N 1.46504 * 109.47080 * 174.51491 * 14 13 10 18 18 C 1.36943 * 119.99769 * 205.93063 * 17 14 13 19 19 H 1.07992 * 120.00248 * 4.93017 * 18 17 14 20 20 C 1.38810 * 119.99689 * 184.93186 * 18 17 14 21 21 N 1.31618 * 120.00074 * 184.01948 * 20 18 17 22 22 Si 1.86801 * 120.00094 * 4.02812 * 20 18 17 23 23 H 1.48503 * 109.47396 * 92.66310 * 22 20 18 24 24 H 1.48506 * 109.47122 * 212.66415 * 22 20 18 25 25 H 1.48501 * 109.47098 * 332.66282 * 22 20 18 26 26 O 1.33926 * 125.61613 * 269.69316 * 3 2 1 27 27 H 1.08996 * 109.47022 * 300.00609 * 1 2 3 28 28 H 1.09002 * 109.46976 * 59.99966 * 1 2 3 29 29 H 1.09000 * 109.47046 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47107 * 240.00108 * 2 1 3 31 31 H 1.08997 * 109.46538 * 119.99915 * 2 1 3 32 32 H 1.07995 * 126.44346 * 0.03482 * 4 3 2 33 33 H 1.07992 * 126.64756 * 179.97438 * 5 4 3 34 34 H 0.96998 * 119.99418 * 4.55021 * 9 7 6 35 35 H 1.08998 * 109.46784 * 180.02562 * 12 10 9 36 36 H 1.09001 * 109.46881 * 299.99906 * 12 10 9 37 37 H 1.08998 * 109.47191 * 60.00357 * 12 10 9 38 38 H 1.08995 * 109.47526 * 56.84477 * 13 10 9 39 39 H 1.09005 * 109.47632 * 176.84962 * 13 10 9 40 40 H 1.08998 * 109.46681 * 300.00004 * 16 14 13 41 41 H 1.08993 * 109.47151 * 59.99964 * 16 14 13 42 42 H 1.08998 * 109.46868 * 179.97438 * 16 14 13 43 43 H 0.96999 * 120.00003 * 25.93047 * 17 14 13 44 44 H 0.96993 * 120.00306 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2947 2.1627 1.0986 5 6 2.7389 3.4176 0.6532 6 6 2.7245 3.3773 -0.7117 7 6 3.1118 4.4698 -1.6102 8 8 3.3980 5.5608 -1.1533 9 7 3.1506 4.2656 -2.9418 10 6 3.6328 5.3248 -3.8316 11 1 4.4380 5.8723 -3.3417 12 6 2.4845 6.2841 -4.1513 13 6 4.1541 4.7032 -5.1287 14 6 5.3527 3.8044 -4.8178 15 1 5.0716 3.0732 -4.0599 16 6 6.5098 4.6594 -4.2972 17 7 5.7701 3.1079 -6.0372 18 6 6.4218 1.9066 -5.9505 19 1 6.5577 1.4341 -4.9890 20 6 6.9078 1.2963 -7.0987 21 7 7.4637 0.1055 -7.0260 22 14 6.7730 2.1652 -8.7468 23 1 8.0141 2.9402 -9.0009 24 1 6.5888 1.1589 -9.8233 25 1 5.6091 3.0872 -8.7266 26 8 2.2978 2.1542 -1.0887 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.1842 1.8489 2.1260 33 1 3.0341 4.2532 1.2703 34 1 2.8594 3.4172 -3.3110 35 1 2.8431 7.0720 -4.8137 36 1 1.6793 5.7366 -4.6412 37 1 2.1131 6.7270 -3.2272 38 1 3.3649 4.1096 -5.5901 39 1 4.4610 5.4942 -5.8130 40 1 6.7909 5.3905 -5.0552 41 1 6.1993 5.1775 -3.3900 42 1 7.3635 4.0190 -4.0753 43 1 5.5848 3.4977 -6.9059 44 1 7.8030 -0.3211 -7.8283 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134747438.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:21 Heat of formation + Delta-G solvation = -26.652849 kcal Electronic energy + Delta-G solvation = -23789.971807 eV Core-core repulsion = 20322.922703 eV Total energy + Delta-G solvation = -3467.049104 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.81311 -39.68921 -37.09817 -34.82757 -34.48544 -32.98655 -32.26727 -31.13215 -29.17983 -28.77853 -26.38828 -24.75939 -23.60743 -22.55007 -21.55340 -20.99666 -20.25716 -19.80194 -18.45025 -17.51092 -16.54115 -16.26009 -15.74957 -15.04180 -14.70154 -14.54674 -14.33623 -14.22395 -13.74085 -13.35382 -13.26998 -13.20746 -13.06638 -12.67294 -12.62505 -12.52986 -12.19387 -11.97931 -11.89394 -11.73129 -11.35502 -11.31300 -11.01413 -10.66499 -10.55816 -10.22887 -10.19745 -10.13645 -9.96871 -9.58993 -9.11696 -8.94270 -8.58599 -7.27058 -5.77354 -3.12703 0.98032 2.20654 2.50654 3.12126 3.24943 3.35256 3.40118 3.44816 4.33512 4.58349 4.65104 4.77489 4.78431 4.90014 4.94711 5.14007 5.15480 5.28394 5.44784 5.48946 5.52240 5.54608 5.57112 5.63576 5.71162 5.72339 5.75517 5.84233 5.88094 5.95614 6.10415 6.18633 6.23995 6.24751 6.39234 6.50153 6.54913 6.78390 6.84025 7.03293 7.49586 8.00774 8.08776 8.41942 9.21425 9.93684 10.14227 11.41105 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.013508 B = 0.004056 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.313640 B = 6901.830370 C = 8213.568727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.050 4.050 3 C 0.025 3.975 4 C -0.224 4.224 5 C -0.120 4.120 6 C -0.078 4.078 7 C 0.605 3.395 8 O -0.526 6.526 9 N -0.707 5.707 10 C 0.143 3.857 11 H 0.094 0.906 12 C -0.162 4.162 13 C -0.137 4.137 14 C 0.177 3.823 15 H 0.055 0.945 16 C -0.168 4.168 17 N -0.750 5.750 18 C -0.241 4.241 19 H 0.088 0.912 20 C 0.004 3.996 21 N -0.934 5.934 22 Si 0.887 3.113 23 H -0.285 1.285 24 H -0.292 1.292 25 H -0.278 1.278 26 O -0.158 6.158 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.154 0.846 33 H 0.159 0.841 34 H 0.407 0.593 35 H 0.066 0.934 36 H 0.056 0.944 37 H 0.060 0.940 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.045 0.955 41 H 0.040 0.960 42 H 0.056 0.944 43 H 0.362 0.638 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.026 5.404 13.981 21.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.088 4.088 3 C -0.028 4.028 4 C -0.243 4.243 5 C -0.141 4.141 6 C -0.130 4.130 7 C 0.391 3.609 8 O -0.405 6.405 9 N -0.358 5.358 10 C 0.039 3.961 11 H 0.112 0.888 12 C -0.221 4.221 13 C -0.176 4.176 14 C 0.067 3.933 15 H 0.073 0.927 16 C -0.228 4.228 17 N -0.394 5.394 18 C -0.371 4.371 19 H 0.106 0.894 20 C -0.192 4.192 21 N -0.582 5.582 22 Si 0.718 3.282 23 H -0.212 1.212 24 H -0.218 1.218 25 H -0.205 1.205 26 O -0.053 6.053 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.107 0.893 31 H 0.116 0.884 32 H 0.172 0.828 33 H 0.176 0.824 34 H 0.243 0.757 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.095 0.905 40 H 0.064 0.936 41 H 0.059 0.941 42 H 0.075 0.925 43 H 0.195 0.805 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -14.708 5.881 14.027 21.158 hybrid contribution -0.018 0.121 -1.242 1.248 sum -14.726 6.002 12.785 20.404 Atomic orbital electron populations 1.21789 0.93616 1.02604 1.02724 1.20227 0.96563 0.87091 1.04870 1.22843 1.00833 0.95052 0.84078 1.21552 1.08608 0.94418 0.99703 1.21910 1.00437 0.98795 0.92943 1.22104 1.10796 0.85421 0.94672 1.16529 0.77523 0.85215 0.81649 1.90858 1.50235 1.23088 1.76281 1.46037 1.65125 1.18997 1.05615 1.21122 0.96580 0.87995 0.90377 0.88769 1.22182 0.98592 0.99356 1.01951 1.22251 0.99397 1.00245 0.95701 1.20180 0.90901 0.92258 0.89923 0.92720 1.22464 1.00892 1.00087 0.99309 1.42863 1.70546 1.23590 1.02379 1.19068 1.27843 0.94644 0.95540 0.89382 1.24689 1.00476 0.96666 0.97349 1.69706 1.45540 1.14834 1.28154 0.86509 0.77676 0.78817 0.85182 1.21212 1.21848 1.20494 1.84033 1.64481 1.21895 1.34930 0.92164 0.92103 0.91349 0.89299 0.88441 0.82805 0.82359 0.75723 0.91473 0.92477 0.92137 0.91058 0.90454 0.93577 0.94074 0.92480 0.80524 0.93105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.90 37.16 0.37 -0.61 16 2 C -0.05 -0.38 6.47 -27.88 -0.18 -0.56 16 3 C 0.02 0.27 6.57 -35.41 -0.23 0.03 16 4 C -0.22 -2.32 10.77 -39.88 -0.43 -2.75 16 5 C -0.12 -1.48 10.63 -39.39 -0.42 -1.90 16 6 C -0.08 -1.08 7.13 -36.80 -0.26 -1.34 16 7 C 0.60 9.03 7.74 -12.86 -0.10 8.93 16 8 O -0.53 -9.00 16.52 5.19 0.09 -8.92 16 9 N -0.71 -9.64 4.37 -55.12 -0.24 -9.88 16 10 C 0.14 1.91 2.39 -67.93 -0.16 1.75 16 11 H 0.09 1.37 5.96 -51.93 -0.31 1.06 16 12 C -0.16 -1.86 9.48 37.16 0.35 -1.51 16 13 C -0.14 -2.01 4.42 -26.73 -0.12 -2.13 16 14 C 0.18 3.32 2.91 -67.93 -0.20 3.12 16 15 H 0.05 1.09 7.43 -51.93 -0.39 0.70 16 16 C -0.17 -3.03 9.27 37.16 0.34 -2.69 16 17 N -0.75 -17.45 4.89 -53.42 -0.26 -17.71 16 18 C -0.24 -6.75 10.41 -15.06 -0.16 -6.91 16 19 H 0.09 2.67 8.06 -52.49 -0.42 2.24 16 20 C 0.00 0.11 5.50 -17.43 -0.10 0.02 16 21 N -0.93 -29.28 13.97 55.49 0.78 -28.51 16 22 Si 0.89 22.06 27.95 -169.99 -4.75 17.31 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 25 H -0.28 -6.42 6.23 56.52 0.35 -6.07 16 26 O -0.16 -2.08 10.41 5.00 0.05 -2.03 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.15 1.16 8.06 -52.49 -0.42 0.74 16 33 H 0.16 1.76 8.06 -52.49 -0.42 1.34 16 34 H 0.41 5.28 8.31 -40.82 -0.34 4.94 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.74 8.07 -51.93 -0.42 0.32 16 38 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.04 0.66 6.51 -51.93 -0.34 0.33 16 42 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.36 8.25 5.57 -40.82 -0.23 8.02 16 44 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 366.03 15.07 5.52 5.52 Total: -1.00 -33.08 366.03 -7.24 -40.31 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -7.12 Total: 10.44 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: -1.29 Total: -6.54 kcal Atomic # 7 Polarization: -56.37 SS G_CDS: 0.27 Total: -56.10 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.14 Total: -10.94 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.75 Total: 17.31 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.08 -7.24 -40.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134747438.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.661 kcal (2) G-P(sol) polarization free energy of solvation -33.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds