Wall clock time and date at job start Tue Mar 31 2020 06:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50699 * 109.47095 * 2 1 4 4 C 1.35131 * 125.61410 * 89.99917 * 3 2 1 5 5 C 1.40372 * 107.11412 * 179.97438 * 4 3 2 6 6 C 1.36551 * 106.70578 * 0.02562 * 5 4 3 7 7 C 1.46654 * 125.98669 * 180.02562 * 6 5 4 8 8 O 1.21699 * 119.99796 * 354.83363 * 7 6 5 9 9 N 1.34776 * 120.00300 * 174.83553 * 7 6 5 10 10 C 1.46494 * 120.00281 * 184.55550 * 9 7 6 11 11 H 1.09001 * 109.47338 * 35.39631 * 10 9 7 12 12 C 1.53008 * 109.46778 * 275.40005 * 10 9 7 13 13 C 1.52994 * 109.47419 * 155.40342 * 10 9 7 14 14 C 1.53003 * 109.46883 * 296.84853 * 13 10 9 15 15 H 1.09000 * 109.47408 * 54.52007 * 14 13 10 16 16 C 1.53001 * 109.47211 * 294.51605 * 14 13 10 17 17 N 1.46504 * 109.47080 * 174.51491 * 14 13 10 18 18 C 1.36943 * 119.99769 * 205.93063 * 17 14 13 19 19 H 1.07992 * 120.00248 * 4.93017 * 18 17 14 20 20 C 1.38810 * 119.99689 * 184.93186 * 18 17 14 21 21 N 1.31618 * 120.00074 * 184.01948 * 20 18 17 22 22 Si 1.86801 * 120.00094 * 4.02812 * 20 18 17 23 23 H 1.48503 * 109.47396 * 92.66310 * 22 20 18 24 24 H 1.48506 * 109.47122 * 212.66415 * 22 20 18 25 25 H 1.48501 * 109.47098 * 332.66282 * 22 20 18 26 26 O 1.33926 * 125.61613 * 269.69316 * 3 2 1 27 27 H 1.08996 * 109.47022 * 300.00609 * 1 2 3 28 28 H 1.09002 * 109.46976 * 59.99966 * 1 2 3 29 29 H 1.09000 * 109.47046 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47107 * 240.00108 * 2 1 3 31 31 H 1.08997 * 109.46538 * 119.99915 * 2 1 3 32 32 H 1.07995 * 126.44346 * 0.03482 * 4 3 2 33 33 H 1.07992 * 126.64756 * 179.97438 * 5 4 3 34 34 H 0.96998 * 119.99418 * 4.55021 * 9 7 6 35 35 H 1.08998 * 109.46784 * 180.02562 * 12 10 9 36 36 H 1.09001 * 109.46881 * 299.99906 * 12 10 9 37 37 H 1.08998 * 109.47191 * 60.00357 * 12 10 9 38 38 H 1.08995 * 109.47526 * 56.84477 * 13 10 9 39 39 H 1.09005 * 109.47632 * 176.84962 * 13 10 9 40 40 H 1.08998 * 109.46681 * 300.00004 * 16 14 13 41 41 H 1.08993 * 109.47151 * 59.99964 * 16 14 13 42 42 H 1.08998 * 109.46868 * 179.97438 * 16 14 13 43 43 H 0.96999 * 120.00003 * 25.93047 * 17 14 13 44 44 H 0.96993 * 120.00306 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2947 2.1627 1.0986 5 6 2.7389 3.4176 0.6532 6 6 2.7245 3.3773 -0.7117 7 6 3.1118 4.4698 -1.6102 8 8 3.3980 5.5608 -1.1533 9 7 3.1506 4.2656 -2.9418 10 6 3.6328 5.3248 -3.8316 11 1 4.4380 5.8723 -3.3417 12 6 2.4845 6.2841 -4.1513 13 6 4.1541 4.7032 -5.1287 14 6 5.3527 3.8044 -4.8178 15 1 5.0716 3.0732 -4.0599 16 6 6.5098 4.6594 -4.2972 17 7 5.7701 3.1079 -6.0372 18 6 6.4218 1.9066 -5.9505 19 1 6.5577 1.4341 -4.9890 20 6 6.9078 1.2963 -7.0987 21 7 7.4637 0.1055 -7.0260 22 14 6.7730 2.1652 -8.7468 23 1 8.0141 2.9402 -9.0009 24 1 6.5888 1.1589 -9.8233 25 1 5.6091 3.0872 -8.7266 26 8 2.2978 2.1542 -1.0887 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.1842 1.8489 2.1260 33 1 3.0341 4.2532 1.2703 34 1 2.8594 3.4172 -3.3110 35 1 2.8431 7.0720 -4.8137 36 1 1.6793 5.7366 -4.6412 37 1 2.1131 6.7270 -3.2272 38 1 3.3649 4.1096 -5.5901 39 1 4.4610 5.4942 -5.8130 40 1 6.7909 5.3905 -5.0552 41 1 6.1993 5.1775 -3.3900 42 1 7.3635 4.0190 -4.0753 43 1 5.5848 3.4977 -6.9059 44 1 7.8030 -0.3211 -7.8283 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134747438.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:20 Heat of formation + Delta-G solvation = -48.223767 kcal Electronic energy + Delta-G solvation = -23790.907192 eV Core-core repulsion = 20322.922703 eV Total energy + Delta-G solvation = -3467.984490 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.74022 -40.84146 -38.50192 -36.35442 -35.20855 -34.11852 -33.86502 -32.52058 -30.83919 -29.67724 -27.66818 -25.75463 -25.30154 -23.53285 -22.52730 -22.23384 -21.38217 -21.14888 -19.82792 -19.21803 -17.53431 -17.35346 -16.79429 -16.56983 -16.16782 -15.65213 -15.47214 -15.33088 -15.17513 -14.72382 -14.47119 -14.17175 -14.04871 -13.95113 -13.93467 -13.48550 -13.39559 -13.25791 -13.01323 -12.87254 -12.76049 -12.46234 -12.27149 -12.07079 -11.93642 -11.85124 -11.65145 -11.51164 -11.39272 -11.05247 -10.99883 -10.24785 -9.50383 -9.32174 -8.01438 -5.34964 -0.01621 1.32922 1.37841 1.43363 1.49978 1.58165 2.04855 2.20361 2.49593 3.29914 3.40221 3.52869 3.85244 3.92768 3.95451 4.09386 4.17239 4.24200 4.33055 4.40900 4.50631 4.54304 4.58828 4.61240 4.76975 4.81959 4.88300 4.92057 4.94787 5.01045 5.02103 5.03775 5.07528 5.29485 5.31962 5.34856 5.38606 5.44134 5.54712 5.78618 5.86340 6.22643 6.39936 6.96820 7.09914 7.85421 8.06644 9.20392 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.013508 B = 0.004056 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.313640 B = 6901.830370 C = 8213.568727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.051 4.051 3 C 0.022 3.978 4 C -0.223 4.223 5 C -0.120 4.120 6 C -0.112 4.112 7 C 0.603 3.397 8 O -0.555 6.555 9 N -0.704 5.704 10 C 0.146 3.854 11 H 0.084 0.916 12 C -0.154 4.154 13 C -0.123 4.123 14 C 0.171 3.829 15 H 0.037 0.963 16 C -0.159 4.159 17 N -0.750 5.750 18 C -0.228 4.228 19 H 0.049 0.951 20 C -0.065 4.065 21 N -0.986 5.986 22 Si 0.959 3.041 23 H -0.284 1.284 24 H -0.297 1.297 25 H -0.245 1.245 26 O -0.174 6.174 27 H 0.066 0.934 28 H 0.046 0.954 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.123 0.877 32 H 0.185 0.815 33 H 0.166 0.834 34 H 0.410 0.590 35 H 0.085 0.915 36 H 0.066 0.934 37 H 0.050 0.950 38 H 0.077 0.923 39 H 0.097 0.903 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.026 0.974 43 H 0.368 0.632 44 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.667 6.601 13.779 22.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.088 4.088 3 C -0.031 4.031 4 C -0.242 4.242 5 C -0.141 4.141 6 C -0.163 4.163 7 C 0.390 3.610 8 O -0.436 6.436 9 N -0.354 5.354 10 C 0.042 3.958 11 H 0.102 0.898 12 C -0.213 4.213 13 C -0.161 4.161 14 C 0.063 3.937 15 H 0.055 0.945 16 C -0.219 4.219 17 N -0.395 5.395 18 C -0.359 4.359 19 H 0.067 0.933 20 C -0.256 4.256 21 N -0.637 5.637 22 Si 0.787 3.213 23 H -0.211 1.211 24 H -0.224 1.224 25 H -0.169 1.169 26 O -0.070 6.070 27 H 0.085 0.915 28 H 0.065 0.935 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.141 0.859 32 H 0.203 0.797 33 H 0.183 0.817 34 H 0.245 0.755 35 H 0.104 0.896 36 H 0.085 0.915 37 H 0.069 0.931 38 H 0.096 0.904 39 H 0.115 0.885 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.045 0.955 43 H 0.202 0.798 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -16.386 7.121 13.841 22.600 hybrid contribution 0.480 -0.338 -1.013 1.171 sum -15.906 6.783 12.828 21.530 Atomic orbital electron populations 1.21779 0.92599 1.03657 1.02368 1.20446 0.97337 0.85153 1.05865 1.23627 0.99643 0.96077 0.83709 1.21911 1.07839 0.93347 1.01080 1.22216 0.99447 0.99831 0.92560 1.22025 1.13270 0.85867 0.95144 1.16680 0.77084 0.85209 0.81986 1.90825 1.51831 1.24198 1.76779 1.46060 1.64696 1.19217 1.05461 1.21112 0.97216 0.88014 0.89420 0.89827 1.22109 0.97915 0.99284 1.01955 1.22105 0.97400 0.99920 0.96708 1.20367 0.92843 0.92499 0.87974 0.94485 1.22339 0.99305 0.99676 1.00579 1.42819 1.70087 1.22391 1.04162 1.18979 1.27118 0.95909 0.93932 0.93289 1.25534 1.00871 0.97475 1.01737 1.69897 1.47572 1.16973 1.29228 0.85344 0.78762 0.77880 0.79341 1.21085 1.22397 1.16904 1.84015 1.64922 1.21915 1.36161 0.91516 0.93467 0.89595 0.89796 0.85932 0.79729 0.81661 0.75460 0.89578 0.91499 0.93123 0.90420 0.88473 0.92262 0.92216 0.95497 0.79787 0.93416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.90 71.98 0.71 -0.94 16 2 C -0.05 -0.70 6.47 29.85 0.19 -0.50 16 3 C 0.02 0.45 6.57 24.97 0.16 0.62 16 4 C -0.22 -4.29 10.77 22.07 0.24 -4.05 16 5 C -0.12 -2.90 10.63 22.39 0.24 -2.66 16 6 C -0.11 -3.13 7.13 24.07 0.17 -2.96 16 7 C 0.60 18.25 7.74 86.44 0.67 18.92 16 8 O -0.56 -19.21 16.52 -4.35 -0.07 -19.29 16 9 N -0.70 -19.05 4.37 -446.53 -1.95 -21.00 16 10 C 0.15 3.68 2.39 44.99 0.11 3.79 16 11 H 0.08 2.32 5.96 -2.39 -0.01 2.30 16 12 C -0.15 -3.18 9.48 71.98 0.68 -2.50 16 13 C -0.12 -3.31 4.42 30.59 0.14 -3.18 16 14 C 0.17 6.30 2.91 44.99 0.13 6.43 16 15 H 0.04 1.50 7.43 -2.39 -0.02 1.48 16 16 C -0.16 -5.65 9.27 71.98 0.67 -4.98 16 17 N -0.75 -34.15 4.89 -322.93 -1.58 -35.73 16 18 C -0.23 -13.00 10.41 84.03 0.87 -12.13 16 19 H 0.05 3.11 8.06 -2.91 -0.02 3.09 16 20 C -0.07 -3.82 5.50 84.86 0.47 -3.36 16 21 N -0.99 -63.46 13.97 21.65 0.30 -63.16 16 22 Si 0.96 45.08 27.95 68.60 1.92 47.00 16 23 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 24 H -0.30 -14.16 7.11 99.48 0.71 -13.46 16 25 H -0.24 -10.02 6.23 99.48 0.62 -9.40 16 26 O -0.17 -4.62 10.41 -5.02 -0.05 -4.67 16 27 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.12 1.06 8.14 -2.39 -0.02 1.05 16 32 H 0.19 2.26 8.06 -2.91 -0.02 2.24 16 33 H 0.17 3.63 8.06 -2.91 -0.02 3.60 16 34 H 0.41 10.64 8.31 -92.71 -0.77 9.87 16 35 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.05 1.17 8.07 -2.39 -0.02 1.15 16 38 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.10 2.30 8.14 -2.38 -0.02 2.28 16 40 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.06 1.88 6.51 -2.39 -0.02 1.87 16 42 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.37 15.78 5.57 -92.71 -0.52 15.27 16 44 H 0.26 15.75 8.31 -92.71 -0.77 14.97 16 Total: -1.00 -73.40 366.03 3.64 -69.76 By element: Atomic # 1 Polarization: 34.96 SS G_CDS: -0.38 Total: 34.59 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: 5.45 Total: -7.49 kcal Atomic # 7 Polarization: -116.67 SS G_CDS: -3.23 Total: -119.90 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: -0.12 Total: -23.96 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.92 Total: 47.00 kcal Total: -73.40 3.64 -69.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134747438.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.536 kcal (2) G-P(sol) polarization free energy of solvation -73.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds