Wall clock time and date at job start Tue Mar 31 2020 06:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50703 * 109.47395 * 2 1 4 4 C 1.40366 * 126.64400 * 265.02231 * 3 2 1 5 5 C 1.35131 * 107.11441 * 179.97438 * 4 3 2 6 6 O 1.33933 * 108.76606 * 359.75271 * 5 4 3 7 7 C 1.34915 * 109.38794 * 0.40773 * 6 5 4 8 8 C 1.46653 * 125.99037 * 179.85739 * 7 6 5 9 9 O 1.21695 * 119.99723 * 179.68634 * 8 7 6 10 10 N 1.34770 * 119.99976 * 359.68941 * 8 7 6 11 11 C 1.46500 * 120.00009 * 179.97438 * 10 8 7 12 12 H 1.09000 * 109.46940 * 35.00262 * 11 10 8 13 13 C 1.53001 * 109.47393 * 275.00027 * 11 10 8 14 14 C 1.53004 * 109.46937 * 154.99831 * 11 10 8 15 15 C 1.52995 * 109.47243 * 295.00311 * 14 11 10 16 16 H 1.08994 * 109.47294 * 54.99887 * 15 14 11 17 17 C 1.53006 * 109.47104 * 175.00526 * 15 14 11 18 18 N 1.46505 * 109.47024 * 294.99928 * 15 14 11 19 19 C 1.36931 * 119.99788 * 155.00126 * 18 15 14 20 20 H 1.08002 * 120.00438 * 0.02562 * 19 18 15 21 21 C 1.38817 * 119.99680 * 179.72358 * 19 18 15 22 22 N 1.31614 * 119.99888 * 0.27479 * 21 19 18 23 23 Si 1.86803 * 119.99862 * 180.27671 * 21 19 18 24 24 H 1.48498 * 109.47174 * 90.00121 * 23 21 19 25 25 H 1.48501 * 109.47062 * 210.00072 * 23 21 19 26 26 H 1.48504 * 109.46913 * 329.99871 * 23 21 19 27 27 H 1.08998 * 109.47511 * 300.00479 * 1 2 3 28 28 H 1.09006 * 109.47223 * 60.00118 * 1 2 3 29 29 H 1.09002 * 109.47481 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47511 * 239.99521 * 2 1 3 31 31 H 1.09007 * 109.46581 * 119.99486 * 2 1 3 32 32 H 1.07997 * 126.44373 * 359.97438 * 4 3 2 33 33 H 1.07995 * 125.61600 * 180.02562 * 5 4 3 34 34 H 0.97001 * 120.00253 * 359.97438 * 10 8 7 35 35 H 1.08998 * 109.47096 * 59.99712 * 13 11 10 36 36 H 1.09003 * 109.46930 * 180.02562 * 13 11 10 37 37 H 1.09004 * 109.46844 * 300.00271 * 13 11 10 38 38 H 1.09003 * 109.47011 * 174.99909 * 14 11 10 39 39 H 1.09002 * 109.46836 * 55.00406 * 14 11 10 40 40 H 1.08991 * 109.47054 * 180.02562 * 17 15 14 41 41 H 1.09004 * 109.46242 * 299.99533 * 17 15 14 42 42 H 1.08994 * 109.47567 * 59.99528 * 17 15 14 43 43 H 0.97000 * 119.99792 * 334.99921 * 18 15 14 44 44 H 0.97005 * 119.99715 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.4038 2.1781 -1.1220 5 6 2.7909 3.3920 -0.6720 6 8 2.6699 3.4159 0.6616 7 6 2.2139 2.2211 1.0914 8 6 1.9529 1.8491 2.4858 9 8 1.5351 0.7373 2.7509 10 7 2.1756 2.7386 3.4735 11 6 1.9144 2.3672 4.8663 12 1 2.1559 1.3145 5.0130 13 6 0.4370 2.6013 5.1881 14 6 2.7801 3.2230 5.7933 15 6 4.2562 2.8970 5.5574 16 1 4.4923 3.0253 4.5011 17 6 5.1262 3.8387 6.3926 18 7 4.5193 1.5108 5.9518 19 6 5.5658 0.8269 5.3932 20 1 6.1976 1.3095 4.6622 21 6 5.8185 -0.4847 5.7712 22 7 5.0489 -1.0726 6.6624 23 14 7.2509 -1.4151 5.0148 24 1 8.4681 -1.2051 5.8390 25 1 6.9297 -2.8642 4.9667 26 1 7.4934 -0.9159 3.6374 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8932 -0.5138 0.8901 32 1 2.3839 1.8519 -2.1513 33 1 3.1363 4.2099 -1.2869 34 1 2.5089 3.6247 3.2622 35 1 -0.1797 1.9916 4.5278 36 1 0.2428 2.3253 6.2246 37 1 0.1956 3.6541 5.0413 38 1 2.5221 3.0099 6.8307 39 1 2.6030 4.2780 5.5842 40 1 6.1777 3.6068 6.2243 41 1 4.9304 4.8700 6.0991 42 1 4.8900 3.7104 7.4489 43 1 3.9521 1.0775 6.6087 44 1 5.2253 -1.9893 6.9262 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135394629.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:24 Heat of formation + Delta-G solvation = -51.171894 kcal Electronic energy + Delta-G solvation = -24545.697818 eV Core-core repulsion = 21077.585488 eV Total energy + Delta-G solvation = -3468.112330 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.65647 -40.67224 -38.36269 -36.36534 -35.67928 -34.03476 -32.54879 -32.07878 -30.50395 -29.99915 -27.61535 -25.71618 -25.32048 -23.92631 -22.61016 -21.85053 -21.20533 -20.81510 -19.39238 -18.99049 -17.36638 -17.28798 -16.95412 -16.59884 -15.75167 -15.74189 -15.55900 -15.35782 -15.04639 -14.63845 -14.50856 -14.27355 -13.98764 -13.63299 -13.58128 -13.37935 -13.30690 -13.18407 -12.94789 -12.80459 -12.69156 -12.29975 -12.28329 -12.21896 -11.94328 -11.84743 -11.57115 -11.44666 -11.10476 -10.92117 -10.68288 -10.13073 -9.52189 -8.95705 -7.92890 -5.18160 0.09283 1.40861 1.43216 1.45076 1.50399 1.74459 2.17924 2.35035 2.55075 3.41197 3.72898 3.77526 3.83356 3.91343 4.01203 4.12047 4.37610 4.39448 4.43443 4.50603 4.52660 4.62215 4.67414 4.77497 4.81504 4.82723 4.91347 4.99571 5.03503 5.04894 5.09031 5.19967 5.27889 5.31536 5.33316 5.39436 5.45126 5.50058 5.59492 5.62840 5.91305 6.30400 6.56048 7.17510 7.36185 8.15930 8.36466 9.30802 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.011949 B = 0.005325 C = 0.004578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.790806 B = 5256.653397 C = 6115.178901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.067 4.067 3 C -0.096 4.096 4 C -0.233 4.233 5 C 0.011 3.989 6 O -0.170 6.170 7 C -0.112 4.112 8 C 0.592 3.408 9 O -0.554 6.554 10 N -0.697 5.697 11 C 0.146 3.854 12 H 0.052 0.948 13 C -0.151 4.151 14 C -0.118 4.118 15 C 0.163 3.837 16 H 0.037 0.963 17 C -0.155 4.155 18 N -0.731 5.731 19 C -0.227 4.227 20 H 0.066 0.934 21 C -0.077 4.077 22 N -0.967 5.967 23 Si 0.960 3.040 24 H -0.284 1.284 25 H -0.298 1.298 26 H -0.276 1.276 27 H 0.033 0.967 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.091 0.909 31 H 0.053 0.947 32 H 0.183 0.817 33 H 0.259 0.741 34 H 0.411 0.589 35 H 0.038 0.962 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.105 0.895 40 H 0.029 0.971 41 H 0.076 0.924 42 H 0.044 0.956 43 H 0.371 0.629 44 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.032 14.325 -14.783 22.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.104 4.104 3 C -0.099 4.099 4 C -0.251 4.251 5 C -0.058 4.058 6 O -0.065 6.065 7 C -0.164 4.164 8 C 0.380 3.620 9 O -0.435 6.435 10 N -0.347 5.347 11 C 0.042 3.958 12 H 0.070 0.930 13 C -0.209 4.209 14 C -0.156 4.156 15 C 0.055 3.945 16 H 0.055 0.945 17 C -0.215 4.215 18 N -0.371 5.371 19 C -0.359 4.359 20 H 0.084 0.916 21 C -0.269 4.269 22 N -0.619 5.619 23 Si 0.790 3.210 24 H -0.211 1.211 25 H -0.225 1.225 26 H -0.201 1.201 27 H 0.053 0.947 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.110 0.890 31 H 0.072 0.928 32 H 0.200 0.800 33 H 0.275 0.725 34 H 0.247 0.753 35 H 0.058 0.942 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.124 0.876 40 H 0.048 0.952 41 H 0.094 0.906 42 H 0.063 0.937 43 H 0.203 0.797 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -9.124 13.768 -14.457 21.950 hybrid contribution 0.955 -1.012 -0.007 1.392 sum -8.168 12.756 -14.463 20.943 Atomic orbital electron populations 1.21549 0.93539 1.02232 1.01357 1.20137 0.97126 0.90466 1.02714 1.20951 0.99093 0.97691 0.92181 1.22054 1.07981 0.94539 1.00553 1.25346 0.99684 1.00947 0.79793 1.84037 1.65269 1.32530 1.24687 1.21720 1.13417 0.86712 0.94506 1.16851 0.77819 0.84427 0.82941 1.90842 1.47998 1.21854 1.82797 1.45795 1.66043 1.16566 1.06308 1.20930 0.95576 0.99659 0.79629 0.93010 1.22084 0.94128 1.02644 1.02013 1.22083 0.93433 1.00521 0.99550 1.20511 0.93576 0.84048 0.96373 0.94481 1.22292 0.99516 0.99450 1.00228 1.42576 1.34477 1.10211 1.49830 1.19471 1.05184 0.94500 1.16734 0.91574 1.25420 1.02085 0.98381 1.01006 1.69795 1.41998 1.13001 1.37083 0.85323 0.79751 0.77694 0.78201 1.21071 1.22496 1.20107 0.94745 0.91133 0.91502 0.89026 0.92798 0.79971 0.72544 0.75304 0.94231 0.90719 0.90082 0.90063 0.87642 0.95217 0.90554 0.93673 0.79714 0.94327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.25 9.89 71.98 0.71 -2.54 16 2 C -0.07 -1.91 5.72 29.85 0.17 -1.74 16 3 C -0.10 -2.71 5.45 -19.74 -0.11 -2.82 16 4 C -0.23 -4.52 10.83 22.07 0.24 -4.28 16 5 C 0.01 0.19 12.08 67.10 0.81 1.00 16 6 O -0.17 -4.16 10.40 -5.07 -0.05 -4.22 16 7 C -0.11 -3.52 7.13 24.07 0.17 -3.34 16 8 C 0.59 22.02 7.75 86.44 0.67 22.69 16 9 O -0.55 -24.92 14.30 -4.33 -0.06 -24.98 16 10 N -0.70 -22.13 4.44 -446.52 -1.98 -24.11 16 11 C 0.15 4.88 2.52 44.99 0.11 5.00 16 12 H 0.05 2.35 7.05 -2.39 -0.02 2.33 16 13 C -0.15 -4.09 9.48 71.98 0.68 -3.41 16 14 C -0.12 -3.46 4.29 30.59 0.13 -3.32 16 15 C 0.16 6.19 2.84 44.99 0.13 6.32 16 16 H 0.04 1.47 7.56 -2.39 -0.02 1.46 16 17 C -0.16 -5.21 9.49 71.98 0.68 -4.53 16 18 N -0.73 -37.15 4.49 -322.93 -1.45 -38.60 16 19 C -0.23 -13.05 9.93 84.04 0.83 -12.21 16 20 H 0.07 3.73 7.83 -2.91 -0.02 3.71 16 21 C -0.08 -4.62 5.50 84.86 0.47 -4.16 16 22 N -0.97 -61.77 13.06 21.65 0.28 -61.49 16 23 Si 0.96 48.83 29.55 68.60 2.03 50.86 16 24 H -0.28 -13.94 7.11 99.48 0.71 -13.24 16 25 H -0.30 -15.35 7.11 99.48 0.71 -14.65 16 26 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 27 H 0.03 1.02 7.92 -2.39 -0.02 1.00 16 28 H 0.07 1.42 8.14 -2.38 -0.02 1.41 16 29 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.05 1.96 6.73 -2.38 -0.02 1.95 16 32 H 0.18 2.33 8.06 -2.91 -0.02 2.31 16 33 H 0.26 1.29 8.06 -2.91 -0.02 1.27 16 34 H 0.41 10.59 8.36 -92.71 -0.77 9.81 16 35 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 39 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 40 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.37 20.44 7.80 -92.71 -0.72 19.72 16 44 H 0.25 15.45 8.31 -92.70 -0.77 14.68 16 Total: -1.00 -77.47 367.70 3.97 -73.51 By element: Atomic # 1 Polarization: 36.89 SS G_CDS: -0.50 Total: 36.39 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: 5.71 Total: -7.35 kcal Atomic # 7 Polarization: -121.05 SS G_CDS: -3.15 Total: -124.20 kcal Atomic # 8 Polarization: -29.08 SS G_CDS: -0.11 Total: -29.20 kcal Atomic # 14 Polarization: 48.83 SS G_CDS: 2.03 Total: 50.86 kcal Total: -77.47 3.97 -73.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135394629.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.334 kcal (2) G-P(sol) polarization free energy of solvation -77.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds