Wall clock time and date at job start Tue Mar 31 2020 07:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52993 * 109.47260 * 2 1 4 4 C 1.52996 * 109.47168 * 180.02562 * 3 2 1 5 5 N 1.46507 * 109.47006 * 180.02562 * 4 3 2 6 6 C 1.36935 * 120.00009 * 84.62689 * 5 4 3 7 7 H 1.07997 * 120.00212 * 325.89973 * 6 5 4 8 8 C 1.38809 * 120.00144 * 145.89327 * 6 5 4 9 9 N 1.31627 * 119.99787 * 336.98845 * 8 6 5 10 10 Si 1.86798 * 120.00371 * 156.98526 * 8 6 5 11 11 H 1.48499 * 109.47357 * 90.00166 * 10 8 6 12 12 H 1.48498 * 109.47396 * 210.00328 * 10 8 6 13 13 H 1.48499 * 109.46964 * 330.00169 * 10 8 6 14 14 C 1.46496 * 120.00004 * 264.63082 * 5 4 3 15 15 C 1.50695 * 109.47463 * 89.99716 * 14 5 4 16 16 C 1.38061 * 119.52931 * 94.72833 * 15 14 5 17 17 C 1.38782 * 119.32969 * 179.71293 * 16 15 14 18 18 C 1.38798 * 118.43931 * 0.55246 * 17 16 15 19 19 O 1.35998 * 120.49010 * 179.75670 * 18 17 16 20 20 C 1.42893 * 117.00093 * 359.97438 * 19 18 17 21 21 C 1.39352 * 119.01706 * 359.72862 * 18 17 16 22 22 O 1.35765 * 119.71355 * 179.97438 * 21 18 17 23 23 C 1.42896 * 116.99880 * 179.97438 * 22 21 18 24 24 N 1.31993 * 119.53499 * 275.00407 * 15 14 5 25 25 H 1.08998 * 109.47170 * 59.99876 * 1 2 3 26 26 H 1.09004 * 109.47019 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47129 * 299.99813 * 1 2 3 28 28 H 1.09006 * 109.46517 * 240.00168 * 2 1 3 29 29 H 1.09006 * 109.47137 * 120.00454 * 2 1 3 30 30 H 1.09007 * 109.46878 * 60.00183 * 3 2 1 31 31 H 1.09006 * 109.47416 * 300.00283 * 3 2 1 32 32 H 1.08998 * 109.47200 * 300.00086 * 4 3 2 33 33 H 1.08996 * 109.47109 * 60.00746 * 4 3 2 34 34 H 0.97000 * 119.99740 * 179.97438 * 9 8 6 35 35 H 1.09005 * 109.47123 * 210.00001 * 14 5 4 36 36 H 1.09007 * 109.46980 * 329.99984 * 14 5 4 37 37 H 1.07999 * 120.32917 * 0.02562 * 16 15 14 38 38 H 1.07998 * 120.77608 * 180.28149 * 17 16 15 39 39 H 1.09004 * 109.47267 * 300.00069 * 20 19 18 40 40 H 1.09003 * 109.47259 * 60.00028 * 20 19 18 41 41 H 1.08994 * 109.47134 * 180.02562 * 20 19 18 42 42 H 1.09000 * 109.47444 * 60.00973 * 23 22 21 43 43 H 1.09007 * 109.47159 * 180.02562 * 23 22 21 44 44 H 1.08995 * 109.47409 * 300.00332 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.1824 3.5055 1.1810 7 1 3.4815 3.3280 1.9832 8 6 5.2091 4.4248 1.3472 9 7 6.2974 4.3359 0.6122 10 14 5.0462 5.7881 2.6138 11 1 5.5878 5.3218 3.9155 12 1 5.8072 6.9796 2.1593 13 1 3.6141 6.1469 2.7735 14 6 4.4139 3.4755 -1.2629 15 6 3.2022 4.1705 -1.8282 16 6 3.0017 5.5108 -1.5644 17 6 1.8875 6.1482 -2.0920 18 6 1.0035 5.4049 -2.8618 19 8 -0.1043 5.9862 -3.3951 20 6 -0.3027 7.3750 -3.1235 21 6 1.2682 4.0544 -3.0806 22 8 0.4127 3.3139 -3.8310 23 6 0.7406 1.9358 -4.0186 24 7 2.3447 3.4880 -2.5639 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8901 29 1 1.8934 -0.5139 0.8900 30 1 1.6767 1.9562 0.8901 31 1 1.6767 1.9563 -0.8900 32 1 3.9337 0.9284 0.8891 33 1 3.9330 0.9288 -0.8909 34 1 7.0147 4.9786 0.7281 35 1 5.2023 4.2069 -1.0850 36 1 4.7666 2.7262 -1.9718 37 1 3.7074 6.0587 -0.9578 38 1 1.7102 7.1968 -1.9042 39 1 -0.3816 7.5271 -2.0470 40 1 0.5421 7.9452 -3.5100 41 1 -1.2202 7.7121 -3.6058 42 1 0.7864 1.4380 -3.0500 43 1 -0.0227 1.4614 -4.6355 44 1 1.7084 1.8567 -4.5139 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139105643.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:44 Heat of formation + Delta-G solvation = -26.308041 kcal Electronic energy + Delta-G solvation = -25035.459878 eV Core-core repulsion = 21568.425725 eV Total energy + Delta-G solvation = -3467.034152 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.42026 -38.16652 -37.50329 -36.00057 -34.01921 -31.57829 -31.19254 -30.38922 -28.31232 -27.27641 -26.91209 -25.31324 -23.79774 -22.49422 -21.79331 -20.68411 -20.10118 -18.02119 -17.37379 -17.01774 -16.35142 -15.93970 -15.08435 -14.91545 -14.75562 -14.52518 -14.04793 -13.75119 -13.64360 -13.41754 -13.31319 -13.12920 -12.66764 -12.24313 -12.03473 -11.74628 -11.68406 -11.27749 -11.19921 -11.09956 -11.04223 -10.78334 -10.71823 -10.60630 -10.49405 -10.30367 -10.08886 -9.98537 -9.60949 -9.15909 -9.00046 -8.53490 -7.40880 -6.68133 -5.87971 -3.39481 1.72941 1.80568 3.29562 3.36943 3.38545 3.42598 3.58556 4.27254 4.45434 4.93264 5.06152 5.20455 5.21922 5.28401 5.36317 5.41671 5.43328 5.50881 5.56716 5.62926 5.63836 5.67356 5.77874 5.91608 6.05595 6.06923 6.20094 6.36740 6.42927 6.43695 6.48637 6.59945 6.69395 6.72994 6.91674 6.99829 7.06685 7.26059 7.29129 7.48185 7.76699 7.86269 8.40828 8.56690 9.10178 9.73934 10.31322 11.12675 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.010949 B = 0.007046 C = 0.004986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.773545 B = 3972.669533 C = 5614.353552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.120 4.120 3 C -0.141 4.141 4 C 0.153 3.847 5 N -0.571 5.571 6 C -0.251 4.251 7 H 0.061 0.939 8 C 0.011 3.989 9 N -0.885 5.885 10 Si 0.890 3.110 11 H -0.285 1.285 12 H -0.287 1.287 13 H -0.278 1.278 14 C 0.186 3.814 15 C 0.143 3.857 16 C -0.151 4.151 17 C -0.137 4.137 18 C 0.032 3.968 19 O -0.309 6.309 20 C 0.028 3.972 21 C 0.291 3.709 22 O -0.307 6.307 23 C 0.043 3.957 24 N -0.497 5.497 25 H 0.049 0.951 26 H 0.045 0.955 27 H 0.049 0.951 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.065 0.935 32 H 0.043 0.957 33 H 0.037 0.963 34 H 0.257 0.743 35 H 0.117 0.883 36 H 0.043 0.957 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.051 0.949 40 H 0.051 0.949 41 H 0.095 0.905 42 H 0.058 0.942 43 H 0.087 0.913 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.664 0.342 -7.085 11.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.159 4.159 3 C -0.181 4.181 4 C 0.027 3.973 5 N -0.289 5.289 6 C -0.381 4.381 7 H 0.079 0.921 8 C -0.189 4.189 9 N -0.527 5.527 10 Si 0.719 3.281 11 H -0.211 1.211 12 H -0.213 1.213 13 H -0.203 1.203 14 C 0.058 3.942 15 C 0.005 3.995 16 C -0.172 4.172 17 C -0.163 4.163 18 C -0.015 4.015 19 O -0.222 6.222 20 C -0.067 4.067 21 C 0.110 3.890 22 O -0.215 6.215 23 C -0.053 4.053 24 N -0.222 5.222 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.067 0.933 35 H 0.134 0.866 36 H 0.061 0.939 37 H 0.154 0.846 38 H 0.153 0.847 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.113 0.887 42 H 0.077 0.923 43 H 0.105 0.895 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.706 -0.481 -7.461 12.252 hybrid contribution -0.186 1.805 1.068 2.106 sum -9.893 1.325 -6.393 11.853 Atomic orbital electron populations 1.21755 0.96882 1.00439 1.01449 1.21479 0.94894 0.98433 1.01058 1.22235 0.99465 0.94510 1.01912 1.20872 0.91279 0.86431 0.98730 1.43710 1.75207 1.08347 1.01683 1.19035 1.07491 1.18842 0.92750 0.92120 1.25044 0.94156 1.01413 0.98313 1.69966 1.04594 1.35939 1.42242 0.86494 0.77845 0.82227 0.81529 1.21145 1.21306 1.20333 1.20124 0.90671 0.97497 0.85879 1.22661 0.96644 0.90737 0.89494 1.21746 0.98206 0.96002 1.01253 1.21448 0.95481 1.00108 0.99234 1.18785 0.90467 0.90947 1.01323 1.86127 1.40371 1.24529 1.71219 1.22976 1.02028 0.80573 1.01155 1.19155 0.89753 0.86379 0.93726 1.86255 1.45931 1.23046 1.66241 1.22763 1.01216 0.79525 1.01793 1.67408 1.02949 1.38398 1.13404 0.93228 0.93587 0.93194 0.92708 0.92705 0.93134 0.91666 0.93899 0.94455 0.93338 0.86564 0.93858 0.84578 0.84697 0.93013 0.93063 0.88653 0.92349 0.89486 0.92644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.91 37.16 0.37 -1.67 16 2 C -0.12 -1.86 5.93 -26.73 -0.16 -2.02 16 3 C -0.14 -2.70 5.51 -26.74 -0.15 -2.85 16 4 C 0.15 3.24 5.72 -4.04 -0.02 3.22 16 5 N -0.57 -13.75 2.44 -174.61 -0.43 -14.18 16 6 C -0.25 -6.58 9.48 -15.06 -0.14 -6.72 16 7 H 0.06 1.62 7.93 -52.49 -0.42 1.21 16 8 C 0.01 0.28 4.95 -17.43 -0.09 0.19 16 9 N -0.88 -23.90 11.33 55.49 0.63 -23.27 16 10 Si 0.89 20.57 29.61 -169.99 -5.03 15.54 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 13 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 14 C 0.19 4.27 5.64 -5.20 -0.03 4.24 16 15 C 0.14 3.02 6.32 -82.59 -0.52 2.50 16 16 C -0.15 -2.98 9.71 -39.45 -0.38 -3.37 16 17 C -0.14 -2.35 9.14 -39.17 -0.36 -2.71 16 18 C 0.03 0.58 6.72 -38.96 -0.26 0.32 16 19 O -0.31 -5.04 10.29 -34.12 -0.35 -5.40 16 20 C 0.03 0.32 9.83 101.05 0.99 1.31 16 21 C 0.29 5.60 7.50 -16.99 -0.13 5.47 16 22 O -0.31 -5.47 10.27 -33.39 -0.34 -5.82 16 23 C 0.04 0.61 10.38 101.05 1.05 1.66 16 24 N -0.50 -9.96 7.54 -9.43 -0.07 -10.04 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.05 1.05 8.14 -51.92 -0.42 0.63 16 31 H 0.06 1.32 6.41 -51.93 -0.33 0.99 16 32 H 0.04 0.93 8.08 -51.93 -0.42 0.51 16 33 H 0.04 0.76 7.83 -51.93 -0.41 0.35 16 34 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 35 H 0.12 2.92 5.22 -51.93 -0.27 2.65 16 36 H 0.04 0.97 7.86 -51.93 -0.41 0.56 16 37 H 0.14 2.72 8.06 -52.49 -0.42 2.30 16 38 H 0.14 1.88 6.44 -52.49 -0.34 1.54 16 39 H 0.05 0.55 7.70 -51.93 -0.40 0.15 16 40 H 0.05 0.52 7.70 -51.93 -0.40 0.12 16 41 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.06 0.87 8.08 -51.93 -0.42 0.45 16 43 H 0.09 0.95 8.14 -51.92 -0.42 0.53 16 44 H 0.05 0.78 8.11 -51.93 -0.42 0.36 16 LS Contribution 362.42 15.07 5.46 5.46 Total: -1.00 -28.94 362.42 -7.14 -36.08 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -7.17 Total: 2.05 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: 0.17 Total: -0.43 kcal Atomic # 7 Polarization: -47.62 SS G_CDS: 0.13 Total: -47.49 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: -0.69 Total: -11.21 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.03 Total: 15.54 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -28.94 -7.14 -36.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139105643.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.770 kcal (2) G-P(sol) polarization free energy of solvation -28.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds