Wall clock time and date at job start Tue Mar 31 2020 07:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52993 * 109.47260 * 2 1 4 4 C 1.52996 * 109.47168 * 180.02562 * 3 2 1 5 5 N 1.46507 * 109.47006 * 180.02562 * 4 3 2 6 6 C 1.36935 * 120.00009 * 84.62689 * 5 4 3 7 7 H 1.07997 * 120.00212 * 325.89973 * 6 5 4 8 8 C 1.38809 * 120.00144 * 145.89327 * 6 5 4 9 9 N 1.31627 * 119.99787 * 336.98845 * 8 6 5 10 10 Si 1.86798 * 120.00371 * 156.98526 * 8 6 5 11 11 H 1.48499 * 109.47357 * 90.00166 * 10 8 6 12 12 H 1.48498 * 109.47396 * 210.00328 * 10 8 6 13 13 H 1.48499 * 109.46964 * 330.00169 * 10 8 6 14 14 C 1.46496 * 120.00004 * 264.63082 * 5 4 3 15 15 C 1.50695 * 109.47463 * 89.99716 * 14 5 4 16 16 C 1.38061 * 119.52931 * 94.72833 * 15 14 5 17 17 C 1.38782 * 119.32969 * 179.71293 * 16 15 14 18 18 C 1.38798 * 118.43931 * 0.55246 * 17 16 15 19 19 O 1.35998 * 120.49010 * 179.75670 * 18 17 16 20 20 C 1.42893 * 117.00093 * 359.97438 * 19 18 17 21 21 C 1.39352 * 119.01706 * 359.72862 * 18 17 16 22 22 O 1.35765 * 119.71355 * 179.97438 * 21 18 17 23 23 C 1.42896 * 116.99880 * 179.97438 * 22 21 18 24 24 N 1.31993 * 119.53499 * 275.00407 * 15 14 5 25 25 H 1.08998 * 109.47170 * 59.99876 * 1 2 3 26 26 H 1.09004 * 109.47019 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47129 * 299.99813 * 1 2 3 28 28 H 1.09006 * 109.46517 * 240.00168 * 2 1 3 29 29 H 1.09006 * 109.47137 * 120.00454 * 2 1 3 30 30 H 1.09007 * 109.46878 * 60.00183 * 3 2 1 31 31 H 1.09006 * 109.47416 * 300.00283 * 3 2 1 32 32 H 1.08998 * 109.47200 * 300.00086 * 4 3 2 33 33 H 1.08996 * 109.47109 * 60.00746 * 4 3 2 34 34 H 0.97000 * 119.99740 * 179.97438 * 9 8 6 35 35 H 1.09005 * 109.47123 * 210.00001 * 14 5 4 36 36 H 1.09007 * 109.46980 * 329.99984 * 14 5 4 37 37 H 1.07999 * 120.32917 * 0.02562 * 16 15 14 38 38 H 1.07998 * 120.77608 * 180.28149 * 17 16 15 39 39 H 1.09004 * 109.47267 * 300.00069 * 20 19 18 40 40 H 1.09003 * 109.47259 * 60.00028 * 20 19 18 41 41 H 1.08994 * 109.47134 * 180.02562 * 20 19 18 42 42 H 1.09000 * 109.47444 * 60.00973 * 23 22 21 43 43 H 1.09007 * 109.47159 * 180.02562 * 23 22 21 44 44 H 1.08995 * 109.47409 * 300.00332 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.1824 3.5055 1.1810 7 1 3.4815 3.3280 1.9832 8 6 5.2091 4.4248 1.3472 9 7 6.2974 4.3359 0.6122 10 14 5.0462 5.7881 2.6138 11 1 5.5878 5.3218 3.9155 12 1 5.8072 6.9796 2.1593 13 1 3.6141 6.1469 2.7735 14 6 4.4139 3.4755 -1.2629 15 6 3.2022 4.1705 -1.8282 16 6 3.0017 5.5108 -1.5644 17 6 1.8875 6.1482 -2.0920 18 6 1.0035 5.4049 -2.8618 19 8 -0.1043 5.9862 -3.3951 20 6 -0.3027 7.3750 -3.1235 21 6 1.2682 4.0544 -3.0806 22 8 0.4127 3.3139 -3.8310 23 6 0.7406 1.9358 -4.0186 24 7 2.3447 3.4880 -2.5639 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8901 29 1 1.8934 -0.5139 0.8900 30 1 1.6767 1.9562 0.8901 31 1 1.6767 1.9563 -0.8900 32 1 3.9337 0.9284 0.8891 33 1 3.9330 0.9288 -0.8909 34 1 7.0147 4.9786 0.7281 35 1 5.2023 4.2069 -1.0850 36 1 4.7666 2.7262 -1.9718 37 1 3.7074 6.0587 -0.9578 38 1 1.7102 7.1968 -1.9042 39 1 -0.3816 7.5271 -2.0470 40 1 0.5421 7.9452 -3.5100 41 1 -1.2202 7.7121 -3.6058 42 1 0.7864 1.4380 -3.0500 43 1 -0.0227 1.4614 -4.6355 44 1 1.7084 1.8567 -4.5139 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001139105643.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:44 Heat of formation + Delta-G solvation = -42.700920 kcal Electronic energy + Delta-G solvation = -25036.170726 eV Core-core repulsion = 21568.425725 eV Total energy + Delta-G solvation = -3467.745001 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.83400 -39.43574 -38.98543 -37.62343 -35.55925 -33.31177 -32.76667 -31.84968 -29.70152 -28.71997 -28.03683 -26.96849 -25.38820 -23.92003 -23.24661 -22.21830 -21.72933 -19.36460 -18.79845 -18.70991 -17.84779 -17.25554 -16.81004 -16.33219 -16.11758 -15.76844 -15.59035 -15.47898 -15.28476 -14.85514 -14.62222 -14.32881 -14.02726 -13.76737 -13.54834 -13.11347 -13.09906 -12.80467 -12.76034 -12.48479 -12.40192 -12.27133 -12.18860 -12.11420 -12.05019 -11.86694 -11.78613 -11.63524 -11.21355 -10.68835 -10.48072 -10.43673 -8.85239 -8.60515 -7.84409 -5.41035 0.27687 0.31404 1.45041 1.49313 1.58236 2.09654 2.38269 2.50550 2.78779 3.21547 3.48990 3.77965 3.84628 3.99739 4.14936 4.16047 4.30181 4.40415 4.41684 4.41696 4.48335 4.50924 4.56243 4.57076 4.72652 4.76999 4.83464 4.90968 5.00532 5.04831 5.06094 5.06935 5.17252 5.29836 5.39919 5.46035 5.51051 5.58586 5.68233 5.71588 6.02393 6.42348 6.51662 7.03469 7.14381 7.82836 8.37290 9.13361 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.010949 B = 0.007046 C = 0.004986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.773545 B = 3972.669533 C = 5614.353552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.115 4.115 3 C -0.126 4.126 4 C 0.152 3.848 5 N -0.585 5.585 6 C -0.262 4.262 7 H 0.049 0.951 8 C -0.025 4.025 9 N -0.911 5.911 10 Si 0.947 3.053 11 H -0.286 1.286 12 H -0.283 1.283 13 H -0.276 1.276 14 C 0.195 3.805 15 C 0.124 3.876 16 C -0.162 4.162 17 C -0.127 4.127 18 C 0.039 3.961 19 O -0.322 6.322 20 C 0.016 3.984 21 C 0.276 3.724 22 O -0.314 6.314 23 C 0.040 3.960 24 N -0.501 5.501 25 H 0.046 0.954 26 H 0.070 0.930 27 H 0.044 0.956 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.027 0.973 31 H 0.054 0.946 32 H 0.033 0.967 33 H 0.042 0.958 34 H 0.256 0.744 35 H 0.095 0.905 36 H 0.037 0.963 37 H 0.128 0.872 38 H 0.171 0.829 39 H 0.060 0.940 40 H 0.066 0.934 41 H 0.124 0.876 42 H 0.049 0.951 43 H 0.124 0.876 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.698 0.976 -7.705 14.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.153 4.153 3 C -0.166 4.166 4 C 0.027 3.973 5 N -0.305 5.305 6 C -0.392 4.392 7 H 0.066 0.934 8 C -0.223 4.223 9 N -0.554 5.554 10 Si 0.774 3.226 11 H -0.213 1.213 12 H -0.209 1.209 13 H -0.202 1.202 14 C 0.068 3.932 15 C -0.014 4.014 16 C -0.184 4.184 17 C -0.153 4.153 18 C -0.009 4.009 19 O -0.235 6.235 20 C -0.078 4.078 21 C 0.094 3.906 22 O -0.222 6.222 23 C -0.055 4.055 24 N -0.227 5.227 25 H 0.065 0.935 26 H 0.089 0.911 27 H 0.063 0.937 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.046 0.954 31 H 0.073 0.927 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.112 0.888 36 H 0.055 0.945 37 H 0.146 0.854 38 H 0.189 0.811 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.142 0.858 42 H 0.068 0.932 43 H 0.142 0.858 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.762 0.149 -8.094 14.278 hybrid contribution 0.345 1.609 1.151 2.008 sum -11.417 1.758 -6.942 13.477 Atomic orbital electron populations 1.21707 0.95260 1.01990 1.01075 1.21435 0.96271 0.95747 1.01874 1.22028 0.97610 0.96775 1.00144 1.20942 0.92720 0.85271 0.98386 1.43862 1.75689 1.09364 1.01552 1.19095 1.07206 1.19556 0.93358 0.93357 1.25589 0.93778 1.02870 1.00045 1.70067 1.05118 1.36557 1.43687 0.85623 0.77641 0.79932 0.79371 1.21292 1.20858 1.20165 1.19831 0.91200 0.96735 0.85448 1.22236 0.96520 0.91437 0.91181 1.21724 0.99221 0.95638 1.01771 1.21704 0.93992 1.01612 0.97967 1.18910 0.90835 0.90776 1.00402 1.86123 1.39211 1.27264 1.70907 1.23380 1.04115 0.78005 1.02331 1.19438 0.89754 0.87389 0.93971 1.86255 1.45656 1.24488 1.65808 1.22985 1.02529 0.78001 1.01964 1.67269 1.03277 1.38677 1.13439 0.93497 0.91053 0.93690 0.91606 0.92152 0.95427 0.92731 0.94898 0.93936 0.93472 0.88790 0.94479 0.85424 0.81143 0.92134 0.91584 0.85781 0.93213 0.85809 0.92934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.68 9.91 71.98 0.71 -2.97 16 2 C -0.12 -3.43 5.93 30.59 0.18 -3.25 16 3 C -0.13 -4.85 5.51 30.59 0.17 -4.68 16 4 C 0.15 6.61 5.72 86.38 0.49 7.11 16 5 N -0.59 -29.09 2.44 -706.35 -1.73 -30.82 16 6 C -0.26 -14.09 9.48 84.03 0.80 -13.29 16 7 H 0.05 2.67 7.93 -2.91 -0.02 2.65 16 8 C -0.03 -1.33 4.95 84.86 0.42 -0.91 16 9 N -0.91 -50.40 11.33 21.65 0.25 -50.15 16 10 Si 0.95 42.77 29.61 68.60 2.03 44.80 16 11 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 12 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 13 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 14 C 0.20 9.30 5.64 85.63 0.48 9.78 16 15 C 0.12 5.33 6.32 42.49 0.27 5.60 16 16 C -0.16 -6.42 9.71 22.36 0.22 -6.21 16 17 C -0.13 -4.16 9.14 22.53 0.21 -3.95 16 18 C 0.04 1.34 6.72 22.67 0.15 1.49 16 19 O -0.32 -9.65 10.29 -79.77 -0.82 -10.47 16 20 C 0.02 0.30 9.83 113.37 1.11 1.42 16 21 C 0.28 10.41 7.50 84.91 0.64 11.05 16 22 O -0.31 -10.78 10.27 -77.16 -0.79 -11.58 16 23 C 0.04 1.08 10.38 113.37 1.18 2.26 16 24 N -0.50 -20.22 7.54 -296.61 -2.24 -22.46 16 25 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 27 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 29 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 30 H 0.03 1.16 8.14 -2.38 -0.02 1.14 16 31 H 0.05 2.22 6.41 -2.38 -0.02 2.21 16 32 H 0.03 1.46 8.08 -2.39 -0.02 1.44 16 33 H 0.04 1.77 7.83 -2.39 -0.02 1.75 16 34 H 0.26 13.61 8.31 -92.71 -0.77 12.84 16 35 H 0.09 4.93 5.22 -2.38 -0.01 4.92 16 36 H 0.04 1.74 7.86 -2.38 -0.02 1.72 16 37 H 0.13 5.20 8.06 -2.91 -0.02 5.17 16 38 H 0.17 4.21 6.44 -2.91 -0.02 4.19 16 39 H 0.06 1.06 7.70 -2.39 -0.02 1.04 16 40 H 0.07 1.08 7.70 -2.39 -0.02 1.06 16 41 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.05 1.43 8.08 -2.39 -0.02 1.41 16 43 H 0.12 2.38 8.14 -2.38 -0.02 2.36 16 44 H 0.05 1.44 8.11 -2.39 -0.02 1.42 16 Total: -1.00 -63.25 362.42 4.70 -58.56 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: 0.97 Total: 18.69 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: 7.03 Total: 3.44 kcal Atomic # 7 Polarization: -99.71 SS G_CDS: -3.72 Total: -103.43 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -1.61 Total: -22.05 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -63.25 4.70 -58.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139105643.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.854 kcal (2) G-P(sol) polarization free energy of solvation -63.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds