Wall clock time and date at job start Tue Mar 31 2020 07:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47303 * 2 1 4 4 C 1.53001 * 109.47410 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46847 * 179.97438 * 4 3 2 6 6 C 1.36934 * 120.00168 * 269.99745 * 5 4 3 7 7 H 1.08007 * 119.99645 * 142.15599 * 6 5 4 8 8 C 1.38807 * 120.00446 * 322.15641 * 6 5 4 9 9 N 1.31619 * 120.00291 * 157.87583 * 8 6 5 10 10 Si 1.86798 * 119.99906 * 337.88539 * 8 6 5 11 11 H 1.48509 * 109.47240 * 95.32322 * 10 8 6 12 12 H 1.48497 * 109.47322 * 215.32322 * 10 8 6 13 13 H 1.48505 * 109.47271 * 335.32344 * 10 8 6 14 14 C 1.46503 * 119.99491 * 90.00785 * 5 4 3 15 15 C 1.50698 * 109.46933 * 268.10001 * 14 5 4 16 16 C 1.39796 * 126.08178 * 275.45993 * 15 14 5 17 17 C 1.37995 * 106.96982 * 179.77127 * 16 15 14 18 18 C 1.46495 * 126.26653 * 180.25203 * 17 16 15 19 19 O 1.21622 * 119.99728 * 0.19629 * 18 17 16 20 20 O 1.34885 * 120.00089 * 180.19353 * 18 17 16 21 21 C 1.45209 * 116.99926 * 180.02562 * 20 18 17 22 22 N 1.37693 * 107.47140 * 0.41871 * 17 16 15 23 23 C 1.46506 * 125.63553 * 179.83717 * 22 17 16 24 24 C 1.34955 * 108.73255 * 359.57109 * 22 17 16 25 25 H 1.09001 * 109.47230 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47510 * 300.00056 * 1 2 3 27 27 H 1.09001 * 109.47050 * 60.00454 * 1 2 3 28 28 H 1.09005 * 109.47056 * 239.99497 * 2 1 3 29 29 H 1.09001 * 109.46743 * 120.00264 * 2 1 3 30 30 H 1.09004 * 109.46985 * 59.99946 * 3 2 1 31 31 H 1.09003 * 109.47387 * 300.00389 * 3 2 1 32 32 H 1.09004 * 109.46812 * 60.00181 * 4 3 2 33 33 H 1.08994 * 109.47169 * 300.00128 * 4 3 2 34 34 H 0.97001 * 120.00327 * 179.97438 * 9 8 6 35 35 H 1.09005 * 109.47084 * 148.10775 * 14 5 4 36 36 H 1.08992 * 109.47576 * 28.10219 * 14 5 4 37 37 H 1.07998 * 126.51578 * 0.03920 * 16 15 14 38 38 H 1.08996 * 109.46830 * 59.99710 * 21 20 18 39 39 H 1.08997 * 109.46800 * 180.02562 * 21 20 18 40 40 H 1.09000 * 109.47069 * 300.00256 * 21 20 18 41 41 H 1.09005 * 109.47008 * 269.71784 * 23 22 17 42 42 H 1.08999 * 109.47478 * 149.71837 * 23 22 17 43 43 H 1.09001 * 109.47163 * 29.71107 * 23 22 17 44 44 H 1.08004 * 125.51049 * 180.28362 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.2870 3.4685 -1.1861 7 1 4.0491 4.5174 -1.2851 8 6 4.8245 2.7743 -2.2612 9 7 4.6514 3.2221 -3.4867 10 14 5.7934 1.2042 -1.9688 11 1 4.8954 0.0318 -2.1255 12 1 6.9005 1.1149 -2.9544 13 1 6.3545 1.2176 -0.5939 14 6 4.3020 3.5149 1.2685 15 6 3.0603 4.2636 1.6792 16 6 2.6914 5.5429 1.2529 17 6 1.4907 5.8405 1.8644 18 6 0.7218 7.0777 1.7080 19 8 1.1321 7.9605 0.9790 20 8 -0.4410 7.2376 2.3726 21 6 -1.1497 8.4887 2.1694 22 7 1.1493 4.7635 2.6513 23 6 -0.0539 4.6596 3.4808 24 6 2.1033 3.8169 2.5279 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8932 -0.5139 0.8900 30 1 1.6766 1.9562 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 3.9337 0.9285 -0.8892 33 1 3.9330 0.9288 0.8908 34 1 5.0273 2.7371 -4.2380 35 1 5.1263 4.2177 1.1468 36 1 4.5570 2.7852 2.0369 37 1 3.2395 6.1759 0.5709 38 1 -1.3981 8.5982 1.1138 39 1 -2.0655 8.4875 2.7604 40 1 -0.5171 9.3195 2.4819 41 1 0.1579 5.0453 4.4781 42 1 -0.3571 3.6150 3.5520 43 1 -0.8576 5.2413 3.0294 44 1 2.1036 2.8580 3.0250 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139373512.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:08 Heat of formation + Delta-G solvation = -18.627530 kcal Electronic energy + Delta-G solvation = -24494.009384 eV Core-core repulsion = 21027.308284 eV Total energy + Delta-G solvation = -3466.701100 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.19793 -39.70207 -36.54763 -36.32206 -34.05411 -32.77278 -31.36889 -29.85964 -28.61222 -27.57887 -26.83359 -24.97903 -23.50382 -22.84139 -21.06796 -20.48827 -19.70642 -19.39382 -17.25609 -16.85799 -16.41753 -16.36361 -15.55725 -15.34275 -14.96601 -14.56671 -13.94908 -13.89267 -13.54014 -13.24280 -13.14260 -12.88146 -12.75638 -12.59041 -12.26507 -12.18813 -12.12751 -11.86685 -11.62450 -11.52231 -11.18132 -10.83158 -10.79570 -10.65694 -10.50846 -10.47840 -10.20123 -10.02681 -9.57613 -9.39298 -8.50221 -8.19374 -7.79567 -6.70097 -5.88393 -3.29678 1.49940 2.70519 2.98971 3.06422 3.38200 3.51983 3.54141 3.58779 4.62085 4.81051 4.90071 4.99645 5.09168 5.12119 5.18592 5.25718 5.39681 5.42028 5.46476 5.52990 5.58689 5.63084 5.79703 5.85869 5.97890 6.12600 6.17834 6.28829 6.32963 6.38059 6.41726 6.53929 6.58772 6.62910 6.72208 6.82136 7.01992 7.18908 7.24247 7.36362 7.51482 7.91499 8.18008 8.52436 9.11604 9.83468 10.23785 11.27389 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.015305 B = 0.004964 C = 0.004288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.084239 B = 5639.755062 C = 6528.685229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.126 4.126 3 C -0.133 4.133 4 C 0.138 3.862 5 N -0.598 5.598 6 C -0.260 4.260 7 H 0.078 0.922 8 C 0.036 3.964 9 N -0.902 5.902 10 Si 0.877 3.123 11 H -0.288 1.288 12 H -0.305 1.305 13 H -0.270 1.270 14 C 0.211 3.789 15 C -0.168 4.168 16 C -0.061 4.061 17 C -0.069 4.069 18 C 0.538 3.462 19 O -0.503 6.503 20 O -0.368 6.368 21 C 0.037 3.963 22 N -0.426 5.426 23 C 0.071 3.929 24 C 0.033 3.967 25 H 0.044 0.956 26 H 0.047 0.953 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.051 0.949 33 H 0.035 0.965 34 H 0.261 0.739 35 H 0.064 0.936 36 H 0.044 0.956 37 H 0.148 0.852 38 H 0.063 0.937 39 H 0.098 0.902 40 H 0.062 0.938 41 H 0.071 0.929 42 H 0.081 0.919 43 H 0.093 0.907 44 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.292 0.829 15.960 19.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.164 4.164 3 C -0.173 4.173 4 C 0.013 3.987 5 N -0.319 5.319 6 C -0.388 4.388 7 H 0.096 0.904 8 C -0.164 4.164 9 N -0.543 5.543 10 Si 0.708 3.292 11 H -0.216 1.216 12 H -0.233 1.233 13 H -0.194 1.194 14 C 0.085 3.915 15 C -0.176 4.176 16 C -0.088 4.088 17 C -0.177 4.177 18 C 0.385 3.615 19 O -0.391 6.391 20 O -0.286 6.286 21 C -0.057 4.057 22 N -0.102 5.102 23 C -0.070 4.070 24 C -0.103 4.103 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.053 0.947 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.063 0.937 37 H 0.166 0.834 38 H 0.082 0.918 39 H 0.116 0.884 40 H 0.080 0.920 41 H 0.089 0.911 42 H 0.099 0.901 43 H 0.112 0.888 44 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -11.464 1.143 15.763 19.524 hybrid contribution 0.166 -0.766 -0.127 0.795 sum -11.298 0.376 15.635 19.294 Atomic orbital electron populations 1.21737 0.96726 1.00464 1.01454 1.21544 0.95099 0.98661 1.01116 1.22158 0.98749 0.94253 1.02169 1.21203 0.92026 0.86778 0.98720 1.44125 1.74985 1.10848 1.01955 1.18750 1.36313 0.96551 0.87229 0.90403 1.25441 0.98056 0.97723 0.95208 1.69890 1.45548 1.41004 0.97859 0.86921 0.80384 0.84146 0.77724 1.21611 1.23287 1.19448 1.19275 0.90846 0.93920 0.87499 1.20664 1.01070 0.95532 1.00368 1.21316 0.92850 0.96535 0.98148 1.19211 1.00439 0.89479 1.08608 1.19913 0.78628 0.85920 0.77067 1.90899 1.69190 1.42062 1.36965 1.86589 1.35247 1.40741 1.66002 1.23209 0.95920 0.83841 1.02683 1.43703 1.18421 1.13373 1.34745 1.22146 0.86242 1.03626 0.94996 1.21735 0.90344 0.94515 1.03686 0.93639 0.93383 0.92886 0.92523 0.92923 0.92717 0.91686 0.93147 0.94711 0.92910 0.91753 0.93746 0.83443 0.91850 0.88377 0.91956 0.91066 0.90058 0.88847 0.81943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.91 37.16 0.37 -1.61 16 2 C -0.13 -1.98 5.93 -26.74 -0.16 -2.14 16 3 C -0.13 -2.52 5.54 -26.73 -0.15 -2.67 16 4 C 0.14 2.92 4.55 -4.04 -0.02 2.90 16 5 N -0.60 -13.80 2.06 -174.61 -0.36 -14.16 16 6 C -0.26 -7.18 9.92 -15.06 -0.15 -7.33 16 7 H 0.08 2.36 8.06 -52.48 -0.42 1.94 16 8 C 0.04 1.03 5.31 -17.43 -0.09 0.93 16 9 N -0.90 -27.80 13.97 55.49 0.78 -27.03 16 10 Si 0.88 22.27 25.04 -169.99 -4.26 18.01 16 11 H -0.29 -7.13 6.67 56.52 0.38 -6.75 16 12 H -0.30 -7.90 7.11 56.52 0.40 -7.50 16 13 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 14 C 0.21 4.07 6.19 -5.19 -0.03 4.04 16 15 C -0.17 -2.99 5.53 -105.02 -0.58 -3.57 16 16 C -0.06 -1.16 10.60 -39.09 -0.41 -1.58 16 17 C -0.07 -1.18 6.89 -82.00 -0.56 -1.75 16 18 C 0.54 8.95 7.92 34.06 0.27 9.22 16 19 O -0.50 -9.74 16.68 -19.36 -0.32 -10.06 16 20 O -0.37 -4.77 7.99 -41.00 -0.33 -5.10 16 21 C 0.04 0.36 10.57 101.05 1.07 1.42 16 22 N -0.43 -6.03 3.15 -120.40 -0.38 -6.41 16 23 C 0.07 0.69 10.57 59.85 0.63 1.32 16 24 C 0.03 0.49 9.66 -17.16 -0.17 0.32 16 25 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.05 0.96 6.28 -51.93 -0.33 0.63 16 31 H 0.06 1.44 8.14 -51.93 -0.42 1.02 16 32 H 0.05 1.19 3.28 -51.93 -0.17 1.02 16 33 H 0.03 0.65 7.88 -51.93 -0.41 0.24 16 34 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 35 H 0.06 1.27 8.06 -51.93 -0.42 0.85 16 36 H 0.04 0.74 7.87 -51.93 -0.41 0.34 16 37 H 0.15 2.99 8.06 -52.49 -0.42 2.56 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.09 0.91 6.13 -51.93 -0.32 0.59 16 44 H 0.16 1.93 8.06 -52.48 -0.42 1.51 16 LS Contribution 360.39 15.07 5.43 5.43 Total: -1.00 -33.34 360.39 -6.56 -39.90 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -7.13 Total: -0.11 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: 0.01 Total: -0.48 kcal Atomic # 7 Polarization: -47.63 SS G_CDS: 0.04 Total: -47.60 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: -0.65 Total: -15.15 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.26 Total: 18.01 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.34 -6.56 -39.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139373512.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.271 kcal (2) G-P(sol) polarization free energy of solvation -33.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds