Wall clock time and date at job start Tue Mar 31 2020 07:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47303 * 2 1 4 4 C 1.53001 * 109.47410 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46847 * 179.97438 * 4 3 2 6 6 C 1.36934 * 120.00168 * 269.99745 * 5 4 3 7 7 H 1.08007 * 119.99645 * 142.15599 * 6 5 4 8 8 C 1.38807 * 120.00446 * 322.15641 * 6 5 4 9 9 N 1.31619 * 120.00291 * 157.87583 * 8 6 5 10 10 Si 1.86798 * 119.99906 * 337.88539 * 8 6 5 11 11 H 1.48509 * 109.47240 * 95.32322 * 10 8 6 12 12 H 1.48497 * 109.47322 * 215.32322 * 10 8 6 13 13 H 1.48505 * 109.47271 * 335.32344 * 10 8 6 14 14 C 1.46503 * 119.99491 * 90.00785 * 5 4 3 15 15 C 1.50698 * 109.46933 * 268.10001 * 14 5 4 16 16 C 1.39796 * 126.08178 * 275.45993 * 15 14 5 17 17 C 1.37995 * 106.96982 * 179.77127 * 16 15 14 18 18 C 1.46495 * 126.26653 * 180.25203 * 17 16 15 19 19 O 1.21622 * 119.99728 * 0.19629 * 18 17 16 20 20 O 1.34885 * 120.00089 * 180.19353 * 18 17 16 21 21 C 1.45209 * 116.99926 * 180.02562 * 20 18 17 22 22 N 1.37693 * 107.47140 * 0.41871 * 17 16 15 23 23 C 1.46506 * 125.63553 * 179.83717 * 22 17 16 24 24 C 1.34955 * 108.73255 * 359.57109 * 22 17 16 25 25 H 1.09001 * 109.47230 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47510 * 300.00056 * 1 2 3 27 27 H 1.09001 * 109.47050 * 60.00454 * 1 2 3 28 28 H 1.09005 * 109.47056 * 239.99497 * 2 1 3 29 29 H 1.09001 * 109.46743 * 120.00264 * 2 1 3 30 30 H 1.09004 * 109.46985 * 59.99946 * 3 2 1 31 31 H 1.09003 * 109.47387 * 300.00389 * 3 2 1 32 32 H 1.09004 * 109.46812 * 60.00181 * 4 3 2 33 33 H 1.08994 * 109.47169 * 300.00128 * 4 3 2 34 34 H 0.97001 * 120.00327 * 179.97438 * 9 8 6 35 35 H 1.09005 * 109.47084 * 148.10775 * 14 5 4 36 36 H 1.08992 * 109.47576 * 28.10219 * 14 5 4 37 37 H 1.07998 * 126.51578 * 0.03920 * 16 15 14 38 38 H 1.08996 * 109.46830 * 59.99710 * 21 20 18 39 39 H 1.08997 * 109.46800 * 180.02562 * 21 20 18 40 40 H 1.09000 * 109.47069 * 300.00256 * 21 20 18 41 41 H 1.09005 * 109.47008 * 269.71784 * 23 22 17 42 42 H 1.08999 * 109.47478 * 149.71837 * 23 22 17 43 43 H 1.09001 * 109.47163 * 29.71107 * 23 22 17 44 44 H 1.08004 * 125.51049 * 180.28362 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.2870 3.4685 -1.1861 7 1 4.0491 4.5174 -1.2851 8 6 4.8245 2.7743 -2.2612 9 7 4.6514 3.2221 -3.4867 10 14 5.7934 1.2042 -1.9688 11 1 4.8954 0.0318 -2.1255 12 1 6.9005 1.1149 -2.9544 13 1 6.3545 1.2176 -0.5939 14 6 4.3020 3.5149 1.2685 15 6 3.0603 4.2636 1.6792 16 6 2.6914 5.5429 1.2529 17 6 1.4907 5.8405 1.8644 18 6 0.7218 7.0777 1.7080 19 8 1.1321 7.9605 0.9790 20 8 -0.4410 7.2376 2.3726 21 6 -1.1497 8.4887 2.1694 22 7 1.1493 4.7635 2.6513 23 6 -0.0539 4.6596 3.4808 24 6 2.1033 3.8169 2.5279 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8932 -0.5139 0.8900 30 1 1.6766 1.9562 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 3.9337 0.9285 -0.8892 33 1 3.9330 0.9288 0.8908 34 1 5.0273 2.7371 -4.2380 35 1 5.1263 4.2177 1.1468 36 1 4.5570 2.7852 2.0369 37 1 3.2395 6.1759 0.5709 38 1 -1.3981 8.5982 1.1138 39 1 -2.0655 8.4875 2.7604 40 1 -0.5171 9.3195 2.4819 41 1 0.1579 5.0453 4.4781 42 1 -0.3571 3.6150 3.5520 43 1 -0.8576 5.2413 3.0294 44 1 2.1036 2.8580 3.0250 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001139373512.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:07 Heat of formation + Delta-G solvation = -38.697666 kcal Electronic energy + Delta-G solvation = -24494.879691 eV Core-core repulsion = 21027.308284 eV Total energy + Delta-G solvation = -3467.571407 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.44422 -40.92630 -38.22340 -37.55006 -35.42843 -34.29238 -33.18673 -31.16850 -29.93066 -28.77894 -28.03587 -26.46280 -25.02447 -24.07091 -22.72869 -21.89201 -20.93004 -20.74651 -18.77271 -18.18018 -18.00418 -17.55349 -17.31347 -16.53280 -16.19551 -15.95264 -15.53428 -15.07135 -14.83585 -14.78710 -14.41100 -14.33614 -14.24905 -13.80042 -13.66552 -13.49935 -13.22376 -13.06774 -12.93084 -12.86253 -12.74427 -12.58846 -12.06422 -11.90478 -11.88752 -11.87200 -11.78625 -11.62521 -11.44010 -11.14849 -10.57081 -9.52274 -9.13671 -8.59784 -8.11015 -5.48210 0.19901 1.35452 1.46003 1.57299 1.58128 1.72488 1.99335 2.13717 2.49857 3.14607 3.65198 3.75781 4.02437 4.15427 4.19883 4.26609 4.28777 4.29803 4.43675 4.47613 4.52235 4.55020 4.58132 4.64238 4.75316 4.83614 4.85404 4.98075 5.05004 5.06419 5.09773 5.17275 5.18850 5.25492 5.39554 5.45898 5.54635 5.66084 5.83143 5.99766 6.09237 6.29142 6.39299 6.66350 7.11859 7.77112 8.16306 9.09821 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.015305 B = 0.004964 C = 0.004288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.084239 B = 5639.755062 C = 6528.685229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.122 4.122 3 C -0.122 4.122 4 C 0.131 3.869 5 N -0.609 5.609 6 C -0.241 4.241 7 H 0.028 0.972 8 C -0.027 4.027 9 N -0.958 5.958 10 Si 0.950 3.050 11 H -0.276 1.276 12 H -0.316 1.316 13 H -0.250 1.250 14 C 0.211 3.789 15 C -0.194 4.194 16 C -0.101 4.101 17 C -0.082 4.082 18 C 0.540 3.460 19 O -0.544 6.544 20 O -0.355 6.355 21 C 0.029 3.971 22 N -0.411 5.411 23 C 0.062 3.938 24 C 0.062 3.938 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.034 0.966 28 H 0.040 0.960 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.016 0.984 32 H 0.024 0.976 33 H 0.075 0.925 34 H 0.259 0.741 35 H 0.043 0.957 36 H 0.085 0.915 37 H 0.109 0.891 38 H 0.055 0.945 39 H 0.143 0.857 40 H 0.061 0.939 41 H 0.095 0.905 42 H 0.114 0.886 43 H 0.091 0.909 44 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.233 -2.145 20.240 24.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.160 4.160 3 C -0.162 4.162 4 C 0.007 3.993 5 N -0.331 5.331 6 C -0.371 4.371 7 H 0.045 0.955 8 C -0.222 4.222 9 N -0.604 5.604 10 Si 0.779 3.221 11 H -0.203 1.203 12 H -0.245 1.245 13 H -0.173 1.173 14 C 0.085 3.915 15 C -0.201 4.201 16 C -0.129 4.129 17 C -0.191 4.191 18 C 0.388 3.612 19 O -0.435 6.435 20 O -0.271 6.271 21 C -0.064 4.064 22 N -0.085 5.085 23 C -0.077 4.077 24 C -0.076 4.076 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.101 0.899 30 H 0.091 0.909 31 H 0.034 0.966 32 H 0.042 0.958 33 H 0.093 0.907 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.103 0.897 37 H 0.128 0.872 38 H 0.074 0.926 39 H 0.161 0.839 40 H 0.080 0.920 41 H 0.113 0.887 42 H 0.132 0.868 43 H 0.110 0.890 44 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -13.458 -1.839 20.128 24.282 hybrid contribution 0.615 0.297 -1.350 1.513 sum -12.842 -1.542 18.777 22.801 Atomic orbital electron populations 1.21709 0.95039 1.01915 1.01421 1.21520 0.96605 0.96077 1.01825 1.21998 0.97135 0.96387 1.00636 1.21356 0.93475 0.85266 0.99228 1.44235 1.75525 1.11690 1.01607 1.18533 1.34522 0.94774 0.89294 0.95473 1.26101 0.99506 1.01934 0.94676 1.70049 1.47804 1.43539 0.98963 0.85753 0.78249 0.80150 0.77993 1.20320 1.24525 1.17344 1.19360 0.91164 0.94308 0.86624 1.20454 1.01983 0.95135 1.02573 1.21196 0.94590 0.97721 0.99409 1.19127 0.99998 0.90732 1.09258 1.19946 0.79345 0.85311 0.76588 1.90875 1.70422 1.43386 1.38863 1.86576 1.33551 1.42310 1.64695 1.23597 0.97082 0.82438 1.03289 1.43993 1.19263 1.11788 1.33482 1.22560 0.84089 1.06041 0.95046 1.22199 0.88563 0.95359 1.01484 0.91457 0.91687 0.94713 0.94111 0.89882 0.90874 0.96552 0.95771 0.90701 0.93229 0.93854 0.89684 0.87247 0.92582 0.83899 0.91991 0.88679 0.86760 0.89001 0.77395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 9.91 71.98 0.71 -2.66 16 2 C -0.12 -3.41 5.93 30.59 0.18 -3.22 16 3 C -0.12 -4.34 5.54 30.59 0.17 -4.18 16 4 C 0.13 5.24 4.55 86.38 0.39 5.64 16 5 N -0.61 -28.05 2.06 -706.34 -1.45 -29.50 16 6 C -0.24 -14.05 9.92 84.03 0.83 -13.21 16 7 H 0.03 1.83 8.06 -2.91 -0.02 1.81 16 8 C -0.03 -1.63 5.31 84.86 0.45 -1.18 16 9 N -0.96 -62.66 13.97 21.65 0.30 -62.36 16 10 Si 0.95 47.07 25.04 68.60 1.72 48.79 16 11 H -0.28 -13.01 6.67 99.48 0.66 -12.34 16 12 H -0.32 -16.09 7.11 99.48 0.71 -15.39 16 13 H -0.25 -11.43 7.11 99.48 0.71 -10.72 16 14 C 0.21 7.95 6.19 85.63 0.53 8.48 16 15 C -0.19 -6.79 5.53 -20.12 -0.11 -6.90 16 16 C -0.10 -4.10 10.60 22.59 0.24 -3.86 16 17 C -0.08 -2.81 6.89 40.32 0.28 -2.53 16 18 C 0.54 18.29 7.92 69.97 0.55 18.84 16 19 O -0.54 -22.34 16.68 19.44 0.32 -22.01 16 20 O -0.35 -8.66 7.99 -57.99 -0.46 -9.12 16 21 C 0.03 0.50 10.57 113.37 1.20 1.70 16 22 N -0.41 -10.38 3.15 -534.83 -1.68 -12.07 16 23 C 0.06 0.89 10.57 127.77 1.35 2.24 16 24 C 0.06 1.59 9.66 83.58 0.81 2.40 16 25 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.04 1.26 8.14 -2.38 -0.02 1.24 16 29 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.07 2.29 6.28 -2.39 -0.01 2.28 16 31 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.02 1.10 3.28 -2.39 -0.01 1.10 16 33 H 0.07 2.42 7.88 -2.39 -0.02 2.40 16 34 H 0.26 16.06 8.31 -92.71 -0.77 15.29 16 35 H 0.04 1.77 8.06 -2.38 -0.02 1.75 16 36 H 0.09 2.51 7.87 -2.39 -0.02 2.50 16 37 H 0.11 5.09 8.06 -2.91 -0.02 5.07 16 38 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.14 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.09 1.01 8.14 -2.38 -0.02 1.00 16 42 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.09 1.42 6.13 -2.39 -0.01 1.40 16 44 H 0.21 3.43 8.06 -2.91 -0.02 3.41 16 Total: -1.00 -80.85 360.39 7.26 -73.59 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: 0.93 Total: 11.12 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: 7.59 Total: 1.56 kcal Atomic # 7 Polarization: -101.09 SS G_CDS: -2.84 Total: -103.93 kcal Atomic # 8 Polarization: -30.99 SS G_CDS: -0.14 Total: -31.13 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 1.72 Total: 48.79 kcal Total: -80.85 7.26 -73.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139373512.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.889 kcal (2) G-P(sol) polarization free energy of solvation -80.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds