Wall clock time and date at job start Tue Mar 31 2020 07:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46822 * 2 1 4 4 C 1.53004 * 109.46541 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.46776 * 185.31617 * 4 3 2 6 6 C 1.36940 * 120.00003 * 275.91164 * 5 4 3 7 7 H 1.07998 * 120.00084 * 350.14810 * 6 5 4 8 8 C 1.38818 * 119.99757 * 170.13751 * 6 5 4 9 9 N 1.31613 * 119.99975 * 5.12158 * 8 6 5 10 10 Si 1.86800 * 119.99609 * 185.12113 * 8 6 5 11 11 H 1.48496 * 109.47251 * 90.00680 * 10 8 6 12 12 H 1.48503 * 109.46501 * 210.00256 * 10 8 6 13 13 H 1.48496 * 109.47280 * 330.00123 * 10 8 6 14 14 C 1.46496 * 120.00013 * 95.91470 * 5 4 3 15 15 C 1.50699 * 109.47310 * 276.80760 * 14 5 4 16 16 C 1.38572 * 120.38198 * 259.90092 * 15 14 5 17 17 C 1.38531 * 118.54897 * 179.97438 * 16 15 14 18 18 C 1.38804 * 119.23697 * 0.02562 * 17 16 15 19 19 O 1.35674 * 119.65129 * 179.97438 * 18 17 16 20 20 C 1.42903 * 116.99898 * 180.02562 * 19 18 17 21 21 N 1.32314 * 120.69919 * 0.02562 * 18 17 16 22 22 C 1.32346 * 121.57310 * 359.97381 * 21 18 17 23 23 O 1.35676 * 119.64548 * 179.97438 * 22 21 18 24 24 C 1.42902 * 117.00400 * 359.97438 * 23 22 21 25 25 H 1.09000 * 109.47395 * 299.99992 * 1 2 3 26 26 H 1.08999 * 109.46916 * 60.00465 * 1 2 3 27 27 H 1.09002 * 109.47055 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47395 * 240.00008 * 2 1 3 29 29 H 1.08999 * 109.46916 * 119.99535 * 2 1 3 30 30 H 1.08998 * 109.47543 * 60.00172 * 3 2 1 31 31 H 1.08999 * 109.46995 * 299.99487 * 3 2 1 32 32 H 1.09003 * 109.47505 * 65.32052 * 4 3 2 33 33 H 1.08998 * 109.47216 * 305.31268 * 4 3 2 34 34 H 0.96995 * 119.99948 * 184.65084 * 9 8 6 35 35 H 1.09001 * 109.47233 * 156.80295 * 14 5 4 36 36 H 1.09002 * 109.47188 * 36.81102 * 14 5 4 37 37 H 1.07996 * 120.72664 * 359.95804 * 16 15 14 38 38 H 1.08006 * 120.38726 * 180.02562 * 17 16 15 39 39 H 1.08997 * 109.47168 * 300.00173 * 20 19 18 40 40 H 1.08998 * 109.46798 * 60.00491 * 20 19 18 41 41 H 1.08999 * 109.46881 * 179.97438 * 20 19 18 42 42 H 1.09001 * 109.46919 * 300.00114 * 24 23 22 43 43 H 1.09001 * 109.46823 * 59.99962 * 24 23 22 44 44 H 1.08994 * 109.47088 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8178 0.1286 6 6 4.1718 3.6103 -0.9824 7 1 4.0561 3.1804 -1.9664 8 6 4.4354 4.9661 -0.8439 9 7 4.6759 5.4714 0.3474 10 14 4.4486 6.0734 -2.3482 11 1 3.0849 6.6153 -2.5760 12 1 5.3966 7.1952 -2.1287 13 1 4.8748 5.2902 -3.5357 14 6 4.4251 3.3453 1.4452 15 6 3.1874 3.8310 2.1545 16 6 2.8782 5.1815 2.1794 17 6 1.7308 5.5860 2.8419 18 6 0.9314 4.6325 3.4571 19 8 -0.1939 5.0193 4.1087 20 6 -0.9744 3.9912 4.7220 21 7 1.2558 3.3504 3.4155 22 6 2.3447 2.9310 2.7911 23 8 2.6402 1.6069 2.7733 24 6 1.7342 0.7308 3.4469 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 3.9338 1.0132 -0.9329 33 1 3.9329 0.8486 0.8394 34 1 4.7932 6.4283 0.4536 35 1 5.1227 4.1739 1.3231 36 1 4.8959 2.5579 2.0338 37 1 3.5179 5.9031 1.6931 38 1 1.4613 6.6312 2.8795 39 1 -1.3048 3.2835 3.9617 40 1 -0.3700 3.4706 5.4649 41 1 -1.8432 4.4354 5.2076 42 1 1.6798 1.0046 4.5006 43 1 0.7447 0.8161 2.9978 44 1 2.0873 -0.2964 3.3566 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139921971.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:51 Heat of formation + Delta-G solvation = -3.359242 kcal Electronic energy + Delta-G solvation = -25823.234229 eV Core-core repulsion = 22357.195211 eV Total energy + Delta-G solvation = -3466.039018 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.18251 -38.38080 -36.62195 -36.05857 -34.15421 -31.49434 -31.31085 -30.05109 -27.89629 -27.38092 -26.51554 -25.08689 -23.72250 -22.08232 -21.81225 -20.47644 -19.97055 -18.21981 -17.30328 -16.88689 -15.88940 -15.35025 -15.28602 -14.89605 -14.57572 -14.31351 -14.20566 -13.52425 -13.46841 -13.27864 -13.07579 -12.56106 -12.32694 -12.15981 -11.91768 -11.69824 -11.46311 -11.29083 -11.20860 -11.09354 -10.79581 -10.67364 -10.51856 -10.38684 -10.22429 -9.96772 -9.88529 -9.79855 -9.51862 -9.05700 -8.76929 -8.56869 -7.18847 -6.82285 -5.54254 -3.21731 2.10657 2.30906 3.37463 3.44349 3.44803 3.59587 3.79691 4.44953 4.66621 4.97914 5.26558 5.40466 5.42898 5.44787 5.50652 5.58708 5.62409 5.65187 5.76225 5.82353 5.87577 5.90387 6.06158 6.09805 6.18476 6.36455 6.42955 6.43656 6.48945 6.52882 6.70115 6.71314 6.93112 7.08147 7.10462 7.28776 7.44918 7.49775 7.70207 7.79298 7.94040 8.13742 8.52148 8.61763 9.31058 9.87434 10.26671 11.20288 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.012355 B = 0.007553 C = 0.005577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2265.666138 B = 3706.315253 C = 5019.804044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.137 4.137 4 C 0.153 3.847 5 N -0.592 5.592 6 C -0.199 4.199 7 H 0.075 0.925 8 C -0.025 4.025 9 N -0.916 5.916 10 Si 0.915 3.085 11 H -0.291 1.291 12 H -0.290 1.290 13 H -0.283 1.283 14 C 0.169 3.831 15 C -0.148 4.148 16 C 0.007 3.993 17 C -0.245 4.245 18 C 0.320 3.680 19 O -0.317 6.317 20 C 0.046 3.954 21 N -0.608 5.608 22 C 0.334 3.666 23 O -0.292 6.292 24 C 0.044 3.956 25 H 0.047 0.953 26 H 0.049 0.951 27 H 0.044 0.956 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.047 0.953 32 H 0.033 0.967 33 H 0.047 0.953 34 H 0.250 0.750 35 H 0.168 0.832 36 H 0.009 0.991 37 H 0.193 0.807 38 H 0.125 0.875 39 H 0.051 0.949 40 H 0.051 0.949 41 H 0.086 0.914 42 H 0.046 0.954 43 H 0.049 0.951 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.371 -5.924 6.079 10.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C -0.176 4.176 4 C 0.027 3.973 5 N -0.310 5.310 6 C -0.328 4.328 7 H 0.093 0.907 8 C -0.215 4.215 9 N -0.571 5.571 10 Si 0.746 3.254 11 H -0.219 1.219 12 H -0.216 1.216 13 H -0.209 1.209 14 C 0.043 3.957 15 C -0.153 4.153 16 C -0.018 4.018 17 C -0.266 4.266 18 C 0.143 3.857 19 O -0.225 6.225 20 C -0.049 4.049 21 N -0.347 5.347 22 C 0.157 3.843 23 O -0.200 6.200 24 C -0.052 4.052 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.051 0.949 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.183 0.817 36 H 0.027 0.973 37 H 0.209 0.791 38 H 0.143 0.857 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.104 0.896 42 H 0.065 0.935 43 H 0.068 0.932 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.653 -6.300 6.343 11.144 hybrid contribution -0.555 0.691 -0.810 1.201 sum -7.209 -5.610 5.533 10.679 Atomic orbital electron populations 1.21758 0.97044 1.00301 1.01399 1.21489 0.94755 0.98656 1.00848 1.22285 0.99498 0.94226 1.01637 1.20841 0.91369 0.86848 0.98290 1.44289 1.73745 1.09109 1.03867 1.19616 1.36381 0.90044 0.86736 0.90742 1.24671 1.03208 0.96668 0.96954 1.69227 1.57465 1.10819 1.19610 0.86027 0.77342 0.80337 0.81701 1.21853 1.21621 1.20910 1.21095 0.93051 0.99677 0.81863 1.20993 1.01625 0.91913 1.00758 1.22938 0.92877 0.97647 0.88363 1.21179 0.98898 0.99141 1.07398 1.19335 0.86592 0.88040 0.91726 1.86207 1.33929 1.35361 1.66992 1.22638 0.94025 0.91101 0.97175 1.66535 1.21957 1.17798 1.28406 1.19488 0.88913 0.84213 0.91645 1.86390 1.48729 1.13439 1.71401 1.22641 0.93738 0.92374 0.96469 0.93378 0.93200 0.93671 0.92942 0.92701 0.91882 0.93431 0.94877 0.93478 0.93667 0.81670 0.97278 0.79089 0.85738 0.93060 0.93066 0.89600 0.93533 0.93193 0.89686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.91 37.16 0.37 -1.71 16 2 C -0.12 -1.85 5.93 -26.73 -0.16 -2.01 16 3 C -0.14 -2.66 4.91 -26.73 -0.13 -2.79 16 4 C 0.15 3.19 4.98 -4.04 -0.02 3.17 16 5 N -0.59 -14.19 2.53 -174.60 -0.44 -14.64 16 6 C -0.20 -5.10 9.80 -15.06 -0.15 -5.25 16 7 H 0.07 1.90 7.83 -52.49 -0.41 1.48 16 8 C -0.02 -0.62 5.44 -17.43 -0.09 -0.72 16 9 N -0.92 -22.84 5.93 55.49 0.33 -22.51 16 10 Si 0.91 20.81 29.56 -169.99 -5.02 15.78 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 13 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 14 C 0.17 3.98 4.97 -5.20 -0.03 3.96 16 15 C -0.15 -3.33 5.36 -104.31 -0.56 -3.89 16 16 C 0.01 0.14 9.15 -39.35 -0.36 -0.22 16 17 C -0.24 -4.99 10.04 -39.26 -0.39 -5.38 16 18 C 0.32 6.42 7.49 -17.13 -0.13 6.29 16 19 O -0.32 -5.64 10.47 -18.72 -0.20 -5.84 16 20 C 0.05 0.64 10.38 101.05 1.05 1.69 16 21 N -0.61 -12.21 8.06 -13.40 -0.11 -12.32 16 22 C 0.33 7.00 5.52 -17.14 -0.09 6.90 16 23 O -0.29 -5.54 6.37 -18.73 -0.12 -5.66 16 24 C 0.04 0.65 10.15 101.05 1.03 1.68 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.05 0.81 7.91 -51.93 -0.41 0.40 16 30 H 0.06 1.34 4.47 -51.93 -0.23 1.11 16 31 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.03 0.68 8.09 -51.93 -0.42 0.26 16 33 H 0.05 0.95 7.09 -51.93 -0.37 0.58 16 34 H 0.25 6.03 7.83 -40.82 -0.32 5.71 16 35 H 0.17 4.24 4.70 -74.46 -0.35 3.89 16 36 H 0.01 0.21 7.69 -51.93 -0.40 -0.19 16 37 H 0.19 4.39 4.61 -52.49 -0.24 4.14 16 38 H 0.12 2.27 8.06 -52.48 -0.42 1.85 16 39 H 0.05 0.72 8.10 -51.93 -0.42 0.30 16 40 H 0.05 0.69 8.10 -51.93 -0.42 0.27 16 41 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.05 0.67 8.10 -51.93 -0.42 0.25 16 43 H 0.05 0.75 8.10 -51.93 -0.42 0.33 16 44 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 345.95 15.07 5.21 5.21 Total: -1.00 -26.80 345.95 -7.03 -33.83 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -7.01 Total: 4.41 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: 0.33 Total: 1.72 kcal Atomic # 7 Polarization: -49.25 SS G_CDS: -0.22 Total: -49.47 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: -0.32 Total: -11.50 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -26.80 -7.03 -33.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139921971.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.473 kcal (2) G-P(sol) polarization free energy of solvation -26.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds