Wall clock time and date at job start Tue Mar 31 2020 07:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46822 * 2 1 4 4 C 1.53004 * 109.46541 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.46776 * 185.31617 * 4 3 2 6 6 C 1.36940 * 120.00003 * 275.91164 * 5 4 3 7 7 H 1.07998 * 120.00084 * 350.14810 * 6 5 4 8 8 C 1.38818 * 119.99757 * 170.13751 * 6 5 4 9 9 N 1.31613 * 119.99975 * 5.12158 * 8 6 5 10 10 Si 1.86800 * 119.99609 * 185.12113 * 8 6 5 11 11 H 1.48496 * 109.47251 * 90.00680 * 10 8 6 12 12 H 1.48503 * 109.46501 * 210.00256 * 10 8 6 13 13 H 1.48496 * 109.47280 * 330.00123 * 10 8 6 14 14 C 1.46496 * 120.00013 * 95.91470 * 5 4 3 15 15 C 1.50699 * 109.47310 * 276.80760 * 14 5 4 16 16 C 1.38572 * 120.38198 * 259.90092 * 15 14 5 17 17 C 1.38531 * 118.54897 * 179.97438 * 16 15 14 18 18 C 1.38804 * 119.23697 * 0.02562 * 17 16 15 19 19 O 1.35674 * 119.65129 * 179.97438 * 18 17 16 20 20 C 1.42903 * 116.99898 * 180.02562 * 19 18 17 21 21 N 1.32314 * 120.69919 * 0.02562 * 18 17 16 22 22 C 1.32346 * 121.57310 * 359.97381 * 21 18 17 23 23 O 1.35676 * 119.64548 * 179.97438 * 22 21 18 24 24 C 1.42902 * 117.00400 * 359.97438 * 23 22 21 25 25 H 1.09000 * 109.47395 * 299.99992 * 1 2 3 26 26 H 1.08999 * 109.46916 * 60.00465 * 1 2 3 27 27 H 1.09002 * 109.47055 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47395 * 240.00008 * 2 1 3 29 29 H 1.08999 * 109.46916 * 119.99535 * 2 1 3 30 30 H 1.08998 * 109.47543 * 60.00172 * 3 2 1 31 31 H 1.08999 * 109.46995 * 299.99487 * 3 2 1 32 32 H 1.09003 * 109.47505 * 65.32052 * 4 3 2 33 33 H 1.08998 * 109.47216 * 305.31268 * 4 3 2 34 34 H 0.96995 * 119.99948 * 184.65084 * 9 8 6 35 35 H 1.09001 * 109.47233 * 156.80295 * 14 5 4 36 36 H 1.09002 * 109.47188 * 36.81102 * 14 5 4 37 37 H 1.07996 * 120.72664 * 359.95804 * 16 15 14 38 38 H 1.08006 * 120.38726 * 180.02562 * 17 16 15 39 39 H 1.08997 * 109.47168 * 300.00173 * 20 19 18 40 40 H 1.08998 * 109.46798 * 60.00491 * 20 19 18 41 41 H 1.08999 * 109.46881 * 179.97438 * 20 19 18 42 42 H 1.09001 * 109.46919 * 300.00114 * 24 23 22 43 43 H 1.09001 * 109.46823 * 59.99962 * 24 23 22 44 44 H 1.08994 * 109.47088 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8178 0.1286 6 6 4.1718 3.6103 -0.9824 7 1 4.0561 3.1804 -1.9664 8 6 4.4354 4.9661 -0.8439 9 7 4.6759 5.4714 0.3474 10 14 4.4486 6.0734 -2.3482 11 1 3.0849 6.6153 -2.5760 12 1 5.3966 7.1952 -2.1287 13 1 4.8748 5.2902 -3.5357 14 6 4.4251 3.3453 1.4452 15 6 3.1874 3.8310 2.1545 16 6 2.8782 5.1815 2.1794 17 6 1.7308 5.5860 2.8419 18 6 0.9314 4.6325 3.4571 19 8 -0.1939 5.0193 4.1087 20 6 -0.9744 3.9912 4.7220 21 7 1.2558 3.3504 3.4155 22 6 2.3447 2.9310 2.7911 23 8 2.6402 1.6069 2.7733 24 6 1.7342 0.7308 3.4469 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 3.9338 1.0132 -0.9329 33 1 3.9329 0.8486 0.8394 34 1 4.7932 6.4283 0.4536 35 1 5.1227 4.1739 1.3231 36 1 4.8959 2.5579 2.0338 37 1 3.5179 5.9031 1.6931 38 1 1.4613 6.6312 2.8795 39 1 -1.3048 3.2835 3.9617 40 1 -0.3700 3.4706 5.4649 41 1 -1.8432 4.4354 5.2076 42 1 1.6798 1.0046 4.5006 43 1 0.7447 0.8161 2.9978 44 1 2.0873 -0.2964 3.3566 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001139921971.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:50 Heat of formation + Delta-G solvation = -19.088109 kcal Electronic energy + Delta-G solvation = -25823.916284 eV Core-core repulsion = 22357.195211 eV Total energy + Delta-G solvation = -3466.721073 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.72758 -39.81529 -38.22852 -37.62750 -35.65336 -33.13387 -33.08047 -31.59000 -29.42354 -28.62454 -27.98763 -26.70612 -25.31450 -23.63386 -23.35990 -21.95114 -21.66763 -19.74201 -18.91294 -18.53759 -17.35065 -17.02760 -16.65614 -16.54797 -16.02484 -15.82653 -15.56351 -15.30444 -15.09377 -14.63623 -14.47048 -13.95998 -13.88135 -13.68739 -13.42896 -13.10299 -12.93055 -12.81799 -12.65485 -12.47494 -12.39889 -12.31934 -12.10409 -11.88653 -11.82851 -11.60144 -11.51387 -11.35444 -11.15637 -10.75246 -10.51329 -10.29463 -8.83817 -8.61573 -7.44017 -5.14449 0.50008 0.66329 1.53844 1.56864 1.62302 2.18239 2.40502 2.58316 3.02046 3.35519 3.54054 3.87991 4.16809 4.28942 4.31123 4.41964 4.42324 4.45162 4.47334 4.48271 4.50180 4.58498 4.69318 4.72019 4.85601 4.88560 4.94850 5.00664 5.07217 5.07841 5.16563 5.18412 5.38190 5.42352 5.54214 5.58999 5.71766 5.86298 5.99273 6.02773 6.16480 6.62294 6.69679 6.95478 7.38893 8.01247 8.37904 9.27164 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.012355 B = 0.007553 C = 0.005577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2265.666138 B = 3706.315253 C = 5019.804044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.112 4.112 3 C -0.124 4.124 4 C 0.154 3.846 5 N -0.604 5.604 6 C -0.222 4.222 7 H 0.069 0.931 8 C -0.058 4.058 9 N -0.919 5.919 10 Si 0.966 3.034 11 H -0.298 1.298 12 H -0.290 1.290 13 H -0.281 1.281 14 C 0.177 3.823 15 C -0.172 4.172 16 C -0.005 4.005 17 C -0.254 4.254 18 C 0.320 3.680 19 O -0.321 6.321 20 C 0.041 3.959 21 N -0.603 5.603 22 C 0.338 3.662 23 O -0.301 6.301 24 C 0.040 3.960 25 H 0.040 0.960 26 H 0.042 0.958 27 H 0.072 0.928 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.046 0.954 31 H 0.021 0.979 32 H 0.033 0.967 33 H 0.054 0.946 34 H 0.249 0.751 35 H 0.147 0.853 36 H 0.006 0.994 37 H 0.181 0.819 38 H 0.142 0.858 39 H 0.048 0.952 40 H 0.053 0.947 41 H 0.124 0.876 42 H 0.051 0.949 43 H 0.048 0.952 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.873 -7.112 6.798 12.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.150 4.150 3 C -0.164 4.164 4 C 0.029 3.971 5 N -0.323 5.323 6 C -0.351 4.351 7 H 0.087 0.913 8 C -0.248 4.248 9 N -0.573 5.573 10 Si 0.797 3.203 11 H -0.226 1.226 12 H -0.217 1.217 13 H -0.207 1.207 14 C 0.051 3.949 15 C -0.178 4.178 16 C -0.030 4.030 17 C -0.275 4.275 18 C 0.143 3.857 19 O -0.229 6.229 20 C -0.054 4.054 21 N -0.342 5.342 22 C 0.161 3.839 23 O -0.208 6.208 24 C -0.055 4.055 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.091 0.909 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.064 0.936 31 H 0.040 0.960 32 H 0.051 0.949 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.162 0.838 36 H 0.024 0.976 37 H 0.197 0.803 38 H 0.160 0.840 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.142 0.858 42 H 0.070 0.930 43 H 0.067 0.933 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.167 -7.508 7.082 13.161 hybrid contribution -0.142 1.013 -0.947 1.394 sum -8.309 -6.495 6.135 12.201 Atomic orbital electron populations 1.21710 0.95731 1.01874 1.00714 1.21431 0.95845 0.95798 1.01977 1.22096 0.98263 0.96572 0.99428 1.20908 0.92308 0.85483 0.98440 1.44412 1.74313 1.10051 1.03542 1.19734 1.37504 0.90734 0.87126 0.91326 1.25234 1.03220 0.97470 0.98874 1.69434 1.56934 1.10767 1.20141 0.85245 0.76537 0.78835 0.79704 1.22617 1.21667 1.20675 1.20788 0.93433 0.98688 0.81956 1.20891 1.02015 0.92595 1.02253 1.22798 0.93629 0.97478 0.89135 1.21295 0.98525 1.00277 1.07367 1.19504 0.87085 0.87913 0.91228 1.86209 1.33191 1.36816 1.66666 1.22959 0.94642 0.90795 0.97007 1.66632 1.21476 1.17801 1.28286 1.19425 0.88564 0.84953 0.90910 1.86371 1.49838 1.12789 1.71796 1.22923 0.93259 0.93032 0.96335 0.94115 0.93881 0.90922 0.91947 0.91374 0.93584 0.96044 0.94905 0.92787 0.93791 0.83754 0.97597 0.80283 0.84044 0.93349 0.92798 0.85805 0.93029 0.93316 0.86476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.68 9.91 71.98 0.71 -2.96 16 2 C -0.11 -3.25 5.93 30.60 0.18 -3.07 16 3 C -0.12 -4.77 4.91 30.60 0.15 -4.62 16 4 C 0.15 6.43 4.98 86.38 0.43 6.86 16 5 N -0.60 -29.52 2.53 -706.32 -1.79 -31.30 16 6 C -0.22 -11.61 9.80 84.03 0.82 -10.78 16 7 H 0.07 3.58 7.83 -2.91 -0.02 3.55 16 8 C -0.06 -2.98 5.44 84.86 0.46 -2.52 16 9 N -0.92 -46.90 5.93 21.65 0.13 -46.77 16 10 Si 0.97 43.35 29.56 68.60 2.03 45.38 16 11 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 12 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 13 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 14 C 0.18 8.56 4.97 85.63 0.43 8.99 16 15 C -0.17 -7.89 5.36 -19.66 -0.11 -7.99 16 16 C -0.01 -0.25 9.15 22.42 0.21 -0.04 16 17 C -0.25 -10.28 10.04 22.48 0.23 -10.06 16 18 C 0.32 12.52 7.49 84.76 0.63 13.15 16 19 O -0.32 -10.80 10.47 -89.91 -0.94 -11.74 16 20 C 0.04 1.01 10.38 113.37 1.18 2.18 16 21 N -0.60 -23.52 8.06 -421.97 -3.40 -26.93 16 22 C 0.34 14.05 5.52 84.74 0.47 14.51 16 23 O -0.30 -11.04 6.37 -89.94 -0.57 -11.61 16 24 C 0.04 1.08 10.15 113.37 1.15 2.23 16 25 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.07 1.80 7.91 -2.39 -0.02 1.78 16 30 H 0.05 1.94 4.47 -2.39 -0.01 1.93 16 31 H 0.02 0.90 8.14 -2.39 -0.02 0.89 16 32 H 0.03 1.34 8.09 -2.39 -0.02 1.32 16 33 H 0.05 2.14 7.09 -2.39 -0.02 2.13 16 34 H 0.25 12.30 7.83 -92.71 -0.73 11.57 16 35 H 0.15 7.67 4.70 -46.87 -0.22 7.45 16 36 H 0.01 0.28 7.69 -2.39 -0.02 0.26 16 37 H 0.18 8.48 4.61 -2.91 -0.01 8.47 16 38 H 0.14 5.09 8.06 -2.91 -0.02 5.07 16 39 H 0.05 1.23 8.10 -2.39 -0.02 1.21 16 40 H 0.05 1.31 8.10 -2.39 -0.02 1.29 16 41 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 42 H 0.05 1.35 8.10 -2.39 -0.02 1.34 16 43 H 0.05 1.35 8.10 -2.39 -0.02 1.33 16 44 H 0.12 2.42 8.14 -2.39 -0.02 2.40 16 Total: -1.00 -57.80 345.95 3.21 -54.59 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: 0.82 Total: 22.52 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: 6.94 Total: 5.87 kcal Atomic # 7 Polarization: -99.94 SS G_CDS: -5.06 Total: -105.00 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: -1.51 Total: -23.35 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -57.80 3.21 -54.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139921971.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.503 kcal (2) G-P(sol) polarization free energy of solvation -57.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds