Wall clock time and date at job start Tue Mar 31 2020 07:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47124 * 2 1 4 4 C 1.52998 * 109.47431 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47507 * 180.02562 * 4 3 2 6 6 C 1.36936 * 119.99683 * 270.00288 * 5 4 3 7 7 H 1.07997 * 119.99979 * 326.01879 * 6 5 4 8 8 C 1.38810 * 119.99593 * 146.02750 * 6 5 4 9 9 N 1.31614 * 120.00429 * 43.90911 * 8 6 5 10 10 Si 1.86807 * 119.99765 * 223.90629 * 8 6 5 11 11 H 1.48500 * 109.47058 * 359.97438 * 10 8 6 12 12 H 1.48494 * 109.47026 * 120.00060 * 10 8 6 13 13 H 1.48503 * 109.47096 * 240.00056 * 10 8 6 14 14 C 1.46493 * 119.99730 * 89.99898 * 5 4 3 15 15 C 1.50702 * 109.47280 * 90.40685 * 14 5 4 16 16 N 1.36427 * 125.45887 * 221.99726 * 15 14 5 17 17 H 0.96996 * 124.81048 * 359.97438 * 16 15 14 18 18 C 1.34628 * 110.38099 * 180.15463 * 16 15 14 19 19 C 1.50699 * 125.89341 * 179.88180 * 18 16 15 20 20 C 1.37841 * 108.20662 * 359.61379 * 18 16 15 21 21 C 1.47112 * 127.02203 * 180.20450 * 20 18 16 22 22 O 1.21549 * 119.99786 * 90.03580 * 21 20 18 23 23 O 1.34781 * 120.00293 * 270.02618 * 21 20 18 24 24 C 1.34441 * 125.45556 * 41.72445 * 15 14 5 25 25 C 1.50694 * 126.81331 * 0.02892 * 24 15 14 26 26 H 1.09001 * 109.46954 * 59.99503 * 1 2 3 27 27 H 1.09000 * 109.46929 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47030 * 299.99564 * 1 2 3 29 29 H 1.09004 * 109.46672 * 240.00423 * 2 1 3 30 30 H 1.08997 * 109.47443 * 120.00506 * 2 1 3 31 31 H 1.09004 * 109.47001 * 60.00624 * 3 2 1 32 32 H 1.08997 * 109.47374 * 300.00548 * 3 2 1 33 33 H 1.09008 * 109.46818 * 59.99821 * 4 3 2 34 34 H 1.09001 * 109.46725 * 300.00545 * 4 3 2 35 35 H 0.97006 * 119.99910 * 184.67134 * 9 8 6 36 36 H 1.08996 * 109.47928 * 330.40453 * 14 5 4 37 37 H 1.09009 * 109.47118 * 210.39970 * 14 5 4 38 38 H 1.08997 * 109.47067 * 269.68742 * 19 18 16 39 39 H 1.09010 * 109.46861 * 149.68967 * 19 18 16 40 40 H 1.08996 * 109.47516 * 29.68823 * 19 18 16 41 41 H 0.96699 * 116.99978 * 179.97438 * 23 21 20 42 42 H 1.09000 * 109.47149 * 276.40355 * 25 24 15 43 43 H 1.08997 * 109.47264 * 36.40189 * 25 24 15 44 44 H 1.08996 * 109.47389 * 156.40172 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0584 2.8238 0.0000 6 6 4.2860 3.4700 -1.1857 7 1 4.6446 2.9175 -2.0416 8 6 4.0561 4.8351 -1.2873 9 7 4.4566 5.6431 -0.3287 10 14 3.1783 5.5254 -2.7848 11 1 2.8342 4.4172 -3.7114 12 1 1.9359 6.2162 -2.3555 13 1 4.0676 6.4917 -3.4782 14 6 4.3030 3.5135 1.2690 15 6 5.7294 3.2847 1.6983 16 7 6.1388 3.0123 2.9708 17 1 5.5499 2.9372 3.7379 18 6 7.4765 2.8662 3.0118 19 6 8.2949 2.5619 4.2401 20 6 7.9677 3.0370 1.7352 21 6 9.3738 2.9607 1.3096 22 8 9.8438 1.8981 0.9526 23 8 10.1408 4.0689 1.3153 24 6 6.8016 3.3113 0.8877 25 6 6.8052 3.5715 -0.5966 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.6768 1.9563 0.8901 32 1 1.6767 1.9564 -0.8899 33 1 3.9330 0.9288 -0.8909 34 1 3.9337 0.9285 0.8891 35 1 4.2368 6.5872 -0.3667 36 1 3.6275 3.1240 2.0305 37 1 4.1291 4.5820 1.1412 38 1 8.6012 3.4950 4.7129 39 1 9.1791 1.9914 3.9554 40 1 7.6964 1.9792 4.9403 41 1 11.0586 3.9691 1.0275 42 1 6.5841 2.6461 -1.1283 43 1 6.0481 4.3181 -0.8364 44 1 7.7860 3.9387 -0.8987 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140497314.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:57 Heat of formation + Delta-G solvation = -30.505782 kcal Electronic energy + Delta-G solvation = -24736.070984 eV Core-core repulsion = 21268.854804 eV Total energy + Delta-G solvation = -3467.216180 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.58940 -39.13657 -36.52862 -35.51948 -34.38069 -31.75337 -31.62033 -31.03314 -28.43540 -27.08697 -26.99286 -24.02040 -23.85525 -22.43020 -21.01173 -20.13262 -19.30129 -18.29380 -17.44652 -16.92061 -16.06171 -15.36425 -14.95863 -14.92947 -14.59699 -14.21969 -13.68318 -13.62160 -13.37813 -12.99498 -12.75363 -12.55232 -12.39858 -12.19728 -11.89273 -11.86429 -11.69032 -11.38881 -11.18097 -11.01703 -10.95170 -10.71831 -10.64243 -10.51853 -10.42491 -10.26155 -10.15229 -9.92977 -9.79697 -9.72592 -7.99001 -7.70943 -7.02471 -6.84824 -6.15285 -3.21493 2.65063 2.65605 3.35167 3.47717 3.50934 3.56046 3.76238 4.08521 4.46200 4.94428 5.20446 5.29220 5.36490 5.37644 5.56253 5.65833 5.68260 5.94119 5.94322 5.96580 6.10780 6.13273 6.25077 6.28611 6.33176 6.34424 6.48615 6.56338 6.57570 6.75212 6.83953 6.93042 6.95754 7.11832 7.19691 7.25759 7.54345 7.65162 7.86351 7.90659 8.24733 8.32560 8.39580 8.42924 9.09207 9.69039 10.27872 10.86428 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.012876 B = 0.005654 C = 0.004479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2174.091978 B = 4950.815632 C = 6249.871551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.135 4.135 4 C 0.159 3.841 5 N -0.586 5.586 6 C -0.260 4.260 7 H 0.077 0.923 8 C 0.034 3.966 9 N -0.847 5.847 10 Si 0.844 3.156 11 H -0.276 1.276 12 H -0.287 1.287 13 H -0.293 1.293 14 C 0.182 3.818 15 C 0.027 3.973 16 N -0.550 5.550 17 H 0.405 0.595 18 C 0.046 3.954 19 C -0.083 4.083 20 C -0.228 4.228 21 C 0.575 3.425 22 O -0.525 6.525 23 O -0.512 6.512 24 C -0.082 4.082 25 C -0.091 4.091 26 H 0.052 0.948 27 H 0.045 0.955 28 H 0.049 0.951 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.044 0.956 34 H 0.031 0.969 35 H 0.261 0.739 36 H 0.018 0.982 37 H 0.147 0.853 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.064 0.936 41 H 0.399 0.601 42 H 0.047 0.953 43 H 0.148 0.852 44 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.110 -4.577 7.460 8.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.175 4.175 4 C 0.033 3.967 5 N -0.307 5.307 6 C -0.388 4.388 7 H 0.095 0.905 8 C -0.166 4.166 9 N -0.488 5.488 10 Si 0.670 3.330 11 H -0.201 1.201 12 H -0.213 1.213 13 H -0.221 1.221 14 C 0.055 3.945 15 C -0.084 4.084 16 N -0.145 5.145 17 H 0.240 0.760 18 C -0.071 4.071 19 C -0.141 4.141 20 C -0.238 4.238 21 C 0.418 3.582 22 O -0.414 6.414 23 O -0.322 6.322 24 C -0.087 4.087 25 C -0.147 4.147 26 H 0.071 0.929 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.063 0.937 34 H 0.050 0.950 35 H 0.072 0.928 36 H 0.036 0.964 37 H 0.163 0.837 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.083 0.917 41 H 0.255 0.745 42 H 0.065 0.935 43 H 0.166 0.834 44 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges 0.788 -4.645 7.557 8.905 hybrid contribution 0.115 0.204 -0.467 0.522 sum 0.902 -4.442 7.090 8.415 Atomic orbital electron populations 1.21764 0.96752 1.00556 1.01591 1.21508 0.95060 0.98423 1.01131 1.22173 0.99128 0.94332 1.01866 1.20734 0.91285 0.86078 0.98624 1.44003 1.74046 1.10854 1.01764 1.18840 1.39863 0.91522 0.88564 0.90495 1.25128 0.98920 0.95778 0.96780 1.70003 1.38793 1.04213 1.35761 0.87131 0.81845 0.78815 0.85164 1.20071 1.21344 1.22056 1.21047 0.84112 1.03191 0.86160 1.22148 0.99717 1.05356 0.81224 1.41545 1.05781 1.57031 1.10150 0.75950 1.19920 0.84329 1.08392 0.94421 1.20303 0.98660 1.01691 0.93420 1.19377 0.88998 1.20855 0.94540 1.20317 0.85790 0.80154 0.71897 1.90832 1.74658 1.30861 1.45007 1.84806 1.27496 1.39513 1.80428 1.20078 0.87818 1.04780 0.95989 1.20959 1.01155 1.03810 0.88823 0.92910 0.93623 0.93163 0.92491 0.92909 0.93168 0.91756 0.93750 0.95043 0.92794 0.96367 0.83697 0.91066 0.90983 0.91716 0.74459 0.93455 0.83444 0.96960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.91 37.16 0.37 -1.48 16 2 C -0.12 -1.72 5.93 -26.73 -0.16 -1.88 16 3 C -0.13 -2.31 5.54 -26.73 -0.15 -2.45 16 4 C 0.16 3.08 5.67 -4.04 -0.02 3.06 16 5 N -0.59 -13.01 2.22 -174.61 -0.39 -13.40 16 6 C -0.26 -6.30 5.36 -15.06 -0.08 -6.38 16 7 H 0.08 1.93 7.71 -52.49 -0.40 1.52 16 8 C 0.03 0.82 4.32 -17.43 -0.08 0.75 16 9 N -0.85 -21.13 9.38 55.49 0.52 -20.61 16 10 Si 0.84 19.40 29.69 -169.99 -5.05 14.35 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 14 C 0.18 3.91 5.80 -5.20 -0.03 3.88 16 15 C 0.03 0.57 6.87 -81.89 -0.56 0.01 16 16 N -0.55 -9.53 5.89 -5.20 -0.03 -9.56 16 17 H 0.41 5.53 8.96 -40.82 -0.37 5.16 16 18 C 0.05 0.80 7.22 -81.51 -0.59 0.21 16 19 C -0.08 -1.07 10.25 36.01 0.37 -0.70 16 20 C -0.23 -4.76 6.21 -103.01 -0.64 -5.40 16 21 C 0.57 11.32 7.74 34.33 0.27 11.59 16 22 O -0.52 -11.28 17.90 -19.30 -0.35 -11.62 16 23 O -0.51 -8.30 13.44 -40.71 -0.55 -8.85 16 24 C -0.08 -1.88 6.27 -102.53 -0.64 -2.52 16 25 C -0.09 -2.19 8.16 36.00 0.29 -1.89 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.04 0.87 8.04 -51.92 -0.42 0.46 16 34 H 0.03 0.59 8.07 -51.93 -0.42 0.17 16 35 H 0.26 6.36 8.32 -40.82 -0.34 6.02 16 36 H 0.02 0.35 8.07 -51.93 -0.42 -0.07 16 37 H 0.15 3.49 4.75 -51.92 -0.25 3.24 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.07 0.94 7.96 -51.92 -0.41 0.53 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.40 4.20 9.11 45.56 0.42 4.61 16 42 H 0.05 1.15 7.24 -51.93 -0.38 0.77 16 43 H 0.15 3.76 3.10 -51.93 -0.16 3.60 16 44 H 0.01 0.27 8.10 -51.93 -0.42 -0.15 16 LS Contribution 357.81 15.07 5.39 5.39 Total: -1.00 -29.23 357.81 -8.27 -37.50 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -6.17 Total: 10.02 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: -1.65 Total: -3.22 kcal Atomic # 7 Polarization: -43.67 SS G_CDS: 0.10 Total: -43.57 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -0.89 Total: -20.47 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.05 Total: 14.35 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.23 -8.27 -37.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140497314.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.993 kcal (2) G-P(sol) polarization free energy of solvation -29.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds