Wall clock time and date at job start Tue Mar 31 2020 07:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46958 * 2 1 4 4 C 1.52999 * 109.46599 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.46936 * 180.02562 * 4 3 2 6 6 C 1.36938 * 119.99781 * 270.00228 * 5 4 3 7 7 H 1.08004 * 119.99765 * 33.01778 * 6 5 4 8 8 C 1.38810 * 119.99892 * 213.01321 * 6 5 4 9 9 N 1.31620 * 119.99962 * 24.77893 * 8 6 5 10 10 Si 1.86802 * 120.00208 * 204.77880 * 8 6 5 11 11 H 1.48500 * 109.47227 * 60.00081 * 10 8 6 12 12 H 1.48495 * 109.47364 * 180.02562 * 10 8 6 13 13 H 1.48505 * 109.46698 * 300.00120 * 10 8 6 14 14 C 1.46495 * 120.00226 * 89.99957 * 5 4 3 15 15 C 1.50708 * 109.47251 * 264.68360 * 14 5 4 16 16 C 1.35481 * 125.50402 * 264.97458 * 15 14 5 17 17 C 1.39798 * 107.84415 * 180.02562 * 16 15 14 18 18 C 1.37998 * 106.96484 * 359.74114 * 17 16 15 19 19 C 1.46490 * 126.26439 * 180.25573 * 18 17 16 20 20 O 1.21623 * 120.00061 * 0.18556 * 19 18 17 21 21 O 1.34893 * 120.00183 * 180.19215 * 19 18 17 22 22 C 1.45205 * 117.00404 * 180.02562 * 21 19 18 23 23 C 1.53000 * 109.47352 * 179.97438 * 22 21 19 24 24 N 1.34956 * 125.50774 * 84.99516 * 15 14 5 25 25 H 0.96998 * 125.63699 * 359.97438 * 24 15 14 26 26 H 1.09003 * 109.47314 * 59.99513 * 1 2 3 27 27 H 1.09000 * 109.47341 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47321 * 299.99935 * 1 2 3 29 29 H 1.09008 * 109.46980 * 240.00735 * 2 1 3 30 30 H 1.08988 * 109.47303 * 120.00424 * 2 1 3 31 31 H 1.09000 * 109.46675 * 60.00208 * 3 2 1 32 32 H 1.08996 * 109.47170 * 300.00137 * 3 2 1 33 33 H 1.09000 * 109.47393 * 60.00702 * 4 3 2 34 34 H 1.08996 * 109.47515 * 299.99980 * 4 3 2 35 35 H 0.97002 * 119.99720 * 179.97438 * 9 8 6 36 36 H 1.09000 * 109.47527 * 144.68008 * 14 5 4 37 37 H 1.09002 * 109.47259 * 24.68196 * 14 5 4 38 38 H 1.08003 * 126.08223 * 0.05360 * 16 15 14 39 39 H 1.07996 * 126.52323 * 179.97438 * 17 16 15 40 40 H 1.09001 * 109.46340 * 299.99720 * 22 21 19 41 41 H 1.08999 * 109.47001 * 59.99189 * 22 21 19 42 42 H 1.09002 * 109.47248 * 299.99901 * 23 22 21 43 43 H 1.08998 * 109.46640 * 59.99734 * 23 22 21 44 44 H 1.08994 * 109.46696 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4425 0.0006 5 7 4.0583 2.8237 0.0013 6 6 4.2870 3.4696 -1.1844 7 1 3.6704 3.2539 -2.0445 8 6 5.3113 4.4015 -1.2808 9 7 6.3407 4.3348 -0.4634 10 14 5.2286 5.7503 -2.5705 11 1 4.0136 6.5745 -2.3477 12 1 6.4356 6.6090 -2.4668 13 1 5.1711 5.1391 -3.9228 14 6 4.3020 3.5140 1.2702 15 6 3.0897 4.3298 1.6392 16 6 2.9134 5.6450 1.3656 17 6 1.6666 6.0243 1.8715 18 6 1.1065 4.9014 2.4458 19 6 -0.2025 4.8234 3.0987 20 8 -0.9077 5.8120 3.1676 21 8 -0.6259 3.6552 3.6237 22 6 -1.9336 3.6514 4.2549 23 6 -2.2392 2.2497 4.7866 24 7 2.0047 3.8685 2.2958 25 1 1.8768 2.9588 2.6070 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8898 31 1 1.6766 1.9563 0.8900 32 1 1.6766 1.9564 -0.8899 33 1 3.9337 0.9286 -0.8892 34 1 3.9329 0.9288 0.8908 35 1 7.0567 4.9858 -0.5310 36 1 5.1648 4.1719 1.1662 37 1 4.4972 2.7796 2.0517 38 1 3.6116 6.2862 0.8483 39 1 1.2240 7.0080 1.8193 40 1 -1.9404 4.3631 5.0805 41 1 -2.6906 3.9355 3.5240 42 1 -2.2324 1.5383 3.9607 43 1 -1.4822 1.9653 5.5174 44 1 -3.2206 2.2471 5.2608 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140689127.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:01 Heat of formation + Delta-G solvation = -41.247768 kcal Electronic energy + Delta-G solvation = -24459.538083 eV Core-core repulsion = 20991.856095 eV Total energy + Delta-G solvation = -3467.681988 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.89845 -39.62511 -36.48570 -36.26225 -34.18887 -31.89849 -31.42952 -30.48650 -29.88629 -27.87337 -25.96966 -24.18953 -23.38313 -22.00242 -21.12660 -20.42739 -19.98163 -19.39441 -18.23770 -16.95971 -16.52114 -16.46936 -14.99498 -14.91121 -14.57926 -14.34756 -13.87130 -13.68678 -13.52748 -13.43672 -13.09328 -12.96466 -12.89402 -12.38836 -12.12455 -12.01803 -11.97866 -11.72881 -11.66537 -11.26087 -11.16886 -10.77326 -10.69786 -10.61112 -10.56653 -10.44001 -10.40325 -10.14183 -10.05077 -9.86320 -8.56864 -8.41932 -7.53066 -6.78505 -5.89716 -3.41854 1.64511 2.75560 3.24969 3.37145 3.43021 3.48229 3.65534 3.70318 4.45020 4.78808 4.81900 5.03533 5.12704 5.14879 5.26779 5.28860 5.48072 5.55747 5.60637 5.61371 5.77623 5.82693 5.84290 5.92855 5.93383 6.06208 6.21650 6.23472 6.26720 6.36487 6.45339 6.47475 6.53079 6.66618 6.84532 6.86203 7.01644 7.30773 7.45002 7.64653 7.75998 7.96319 8.04547 8.38658 9.05191 9.69790 10.22839 11.11534 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.013887 B = 0.005294 C = 0.004229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.860987 B = 5288.020172 C = 6619.770605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.138 4.138 4 C 0.144 3.856 5 N -0.574 5.574 6 C -0.257 4.257 7 H 0.062 0.938 8 C 0.017 3.983 9 N -0.885 5.885 10 Si 0.893 3.107 11 H -0.279 1.279 12 H -0.289 1.289 13 H -0.282 1.282 14 C 0.186 3.814 15 C 0.101 3.899 16 C -0.208 4.208 17 C -0.088 4.088 18 C -0.085 4.085 19 C 0.541 3.459 20 O -0.518 6.518 21 O -0.366 6.366 22 C 0.065 3.935 23 C -0.152 4.152 24 N -0.525 5.525 25 H 0.413 0.587 26 H 0.051 0.949 27 H 0.046 0.954 28 H 0.049 0.951 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.046 0.954 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.033 0.967 35 H 0.258 0.742 36 H 0.128 0.872 37 H 0.038 0.962 38 H 0.140 0.860 39 H 0.140 0.860 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.949 -5.459 8.138 14.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.179 4.179 4 C 0.018 3.982 5 N -0.292 5.292 6 C -0.387 4.387 7 H 0.080 0.920 8 C -0.184 4.184 9 N -0.528 5.528 10 Si 0.722 3.278 11 H -0.205 1.205 12 H -0.215 1.215 13 H -0.208 1.208 14 C 0.058 3.942 15 C -0.023 4.023 16 C -0.231 4.231 17 C -0.116 4.116 18 C -0.194 4.194 19 C 0.389 3.611 20 O -0.408 6.408 21 O -0.284 6.284 22 C -0.009 4.009 23 C -0.209 4.209 24 N -0.121 5.121 25 H 0.250 0.750 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.052 0.948 35 H 0.068 0.932 36 H 0.145 0.855 37 H 0.056 0.944 38 H 0.158 0.842 39 H 0.157 0.843 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.067 -5.249 8.242 14.763 hybrid contribution -0.497 0.507 -0.530 0.886 sum -11.564 -4.742 7.711 14.686 Atomic orbital electron populations 1.21761 0.96685 1.00641 1.01579 1.21501 0.95096 0.98118 1.01348 1.22255 0.99517 0.94602 1.01484 1.20987 0.91079 0.86819 0.99325 1.43782 1.75531 1.08035 1.01857 1.18945 1.10373 1.19536 0.89801 0.91999 1.24973 0.94040 1.01169 0.98188 1.69918 1.07073 1.35589 1.40186 0.86518 0.77301 0.82478 0.81516 1.20475 1.21527 1.20812 1.20022 0.92446 0.95231 0.86511 1.22532 0.91032 0.95332 0.93378 1.20667 0.98480 0.95259 1.08735 1.21275 0.95160 0.96471 0.98676 1.19010 0.91900 0.91005 1.17502 1.19919 0.85199 0.80709 0.75291 1.90843 1.55837 1.36784 1.57288 1.86581 1.36728 1.36369 1.68692 1.22945 0.81954 0.98912 0.97078 1.21803 1.02101 0.95133 1.01876 1.41990 1.14587 1.10681 1.44879 0.74954 0.93031 0.93463 0.93168 0.92330 0.92674 0.93483 0.92270 0.92915 0.94850 0.93211 0.85504 0.94387 0.84205 0.84250 0.91367 0.91356 0.91471 0.91536 0.90353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.91 37.16 0.37 -1.48 16 2 C -0.12 -1.67 5.93 -26.73 -0.16 -1.83 16 3 C -0.14 -2.34 5.54 -26.73 -0.15 -2.48 16 4 C 0.14 2.77 5.71 -4.04 -0.02 2.74 16 5 N -0.57 -13.00 2.45 -174.61 -0.43 -13.43 16 6 C -0.26 -6.58 9.44 -15.06 -0.14 -6.72 16 7 H 0.06 1.62 7.94 -52.48 -0.42 1.20 16 8 C 0.02 0.43 4.96 -17.43 -0.09 0.34 16 9 N -0.89 -23.59 11.31 55.49 0.63 -22.96 16 10 Si 0.89 20.77 29.62 -169.99 -5.04 15.73 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 14 C 0.19 3.96 5.90 -5.19 -0.03 3.93 16 15 C 0.10 1.99 6.61 -82.20 -0.54 1.45 16 16 C -0.21 -4.21 10.71 -39.98 -0.43 -4.64 16 17 C -0.09 -1.67 10.66 -39.09 -0.42 -2.09 16 18 C -0.09 -1.55 7.10 -81.99 -0.58 -2.13 16 19 C 0.54 9.37 7.93 34.05 0.27 9.64 16 20 O -0.52 -9.86 16.68 -19.36 -0.32 -10.18 16 21 O -0.37 -5.38 10.23 -41.02 -0.42 -5.80 16 22 C 0.07 0.74 6.20 37.16 0.23 0.97 16 23 C -0.15 -1.25 10.29 37.16 0.38 -0.86 16 24 N -0.53 -9.13 5.15 -5.82 -0.03 -9.16 16 25 H 0.41 6.34 7.89 -40.82 -0.32 6.01 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.79 8.14 -51.92 -0.42 0.36 16 30 H 0.05 0.70 8.14 -51.94 -0.42 0.27 16 31 H 0.05 0.79 5.95 -51.93 -0.31 0.48 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 33 H 0.05 1.05 8.04 -51.93 -0.42 0.63 16 34 H 0.03 0.59 7.86 -51.93 -0.41 0.19 16 35 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 36 H 0.13 3.08 5.32 -51.93 -0.28 2.80 16 37 H 0.04 0.74 7.83 -51.93 -0.41 0.33 16 38 H 0.14 2.91 8.06 -52.48 -0.42 2.49 16 39 H 0.14 2.41 8.06 -52.49 -0.42 1.99 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 368.47 15.07 5.55 5.55 Total: -1.00 -28.22 368.47 -8.55 -36.77 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -7.19 Total: 6.64 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: -1.31 Total: -3.17 kcal Atomic # 7 Polarization: -45.72 SS G_CDS: 0.17 Total: -45.55 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: -0.74 Total: -15.98 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.04 Total: 15.73 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -28.22 -8.55 -36.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140689127.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.476 kcal (2) G-P(sol) polarization free energy of solvation -28.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds