Wall clock time and date at job start Tue Mar 31 2020 07:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46958 * 2 1 4 4 C 1.52999 * 109.46599 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.46936 * 180.02562 * 4 3 2 6 6 C 1.36938 * 119.99781 * 270.00228 * 5 4 3 7 7 H 1.08004 * 119.99765 * 33.01778 * 6 5 4 8 8 C 1.38810 * 119.99892 * 213.01321 * 6 5 4 9 9 N 1.31620 * 119.99962 * 24.77893 * 8 6 5 10 10 Si 1.86802 * 120.00208 * 204.77880 * 8 6 5 11 11 H 1.48500 * 109.47227 * 60.00081 * 10 8 6 12 12 H 1.48495 * 109.47364 * 180.02562 * 10 8 6 13 13 H 1.48505 * 109.46698 * 300.00120 * 10 8 6 14 14 C 1.46495 * 120.00226 * 89.99957 * 5 4 3 15 15 C 1.50708 * 109.47251 * 264.68360 * 14 5 4 16 16 C 1.35481 * 125.50402 * 264.97458 * 15 14 5 17 17 C 1.39798 * 107.84415 * 180.02562 * 16 15 14 18 18 C 1.37998 * 106.96484 * 359.74114 * 17 16 15 19 19 C 1.46490 * 126.26439 * 180.25573 * 18 17 16 20 20 O 1.21623 * 120.00061 * 0.18556 * 19 18 17 21 21 O 1.34893 * 120.00183 * 180.19215 * 19 18 17 22 22 C 1.45205 * 117.00404 * 180.02562 * 21 19 18 23 23 C 1.53000 * 109.47352 * 179.97438 * 22 21 19 24 24 N 1.34956 * 125.50774 * 84.99516 * 15 14 5 25 25 H 0.96998 * 125.63699 * 359.97438 * 24 15 14 26 26 H 1.09003 * 109.47314 * 59.99513 * 1 2 3 27 27 H 1.09000 * 109.47341 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47321 * 299.99935 * 1 2 3 29 29 H 1.09008 * 109.46980 * 240.00735 * 2 1 3 30 30 H 1.08988 * 109.47303 * 120.00424 * 2 1 3 31 31 H 1.09000 * 109.46675 * 60.00208 * 3 2 1 32 32 H 1.08996 * 109.47170 * 300.00137 * 3 2 1 33 33 H 1.09000 * 109.47393 * 60.00702 * 4 3 2 34 34 H 1.08996 * 109.47515 * 299.99980 * 4 3 2 35 35 H 0.97002 * 119.99720 * 179.97438 * 9 8 6 36 36 H 1.09000 * 109.47527 * 144.68008 * 14 5 4 37 37 H 1.09002 * 109.47259 * 24.68196 * 14 5 4 38 38 H 1.08003 * 126.08223 * 0.05360 * 16 15 14 39 39 H 1.07996 * 126.52323 * 179.97438 * 17 16 15 40 40 H 1.09001 * 109.46340 * 299.99720 * 22 21 19 41 41 H 1.08999 * 109.47001 * 59.99189 * 22 21 19 42 42 H 1.09002 * 109.47248 * 299.99901 * 23 22 21 43 43 H 1.08998 * 109.46640 * 59.99734 * 23 22 21 44 44 H 1.08994 * 109.46696 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4425 0.0006 5 7 4.0583 2.8237 0.0013 6 6 4.2870 3.4696 -1.1844 7 1 3.6704 3.2539 -2.0445 8 6 5.3113 4.4015 -1.2808 9 7 6.3407 4.3348 -0.4634 10 14 5.2286 5.7503 -2.5705 11 1 4.0136 6.5745 -2.3477 12 1 6.4356 6.6090 -2.4668 13 1 5.1711 5.1391 -3.9228 14 6 4.3020 3.5140 1.2702 15 6 3.0897 4.3298 1.6392 16 6 2.9134 5.6450 1.3656 17 6 1.6666 6.0243 1.8715 18 6 1.1065 4.9014 2.4458 19 6 -0.2025 4.8234 3.0987 20 8 -0.9077 5.8120 3.1676 21 8 -0.6259 3.6552 3.6237 22 6 -1.9336 3.6514 4.2549 23 6 -2.2392 2.2497 4.7866 24 7 2.0047 3.8685 2.2958 25 1 1.8768 2.9588 2.6070 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8898 31 1 1.6766 1.9563 0.8900 32 1 1.6766 1.9564 -0.8899 33 1 3.9337 0.9286 -0.8892 34 1 3.9329 0.9288 0.8908 35 1 7.0567 4.9858 -0.5310 36 1 5.1648 4.1719 1.1662 37 1 4.4972 2.7796 2.0517 38 1 3.6116 6.2862 0.8483 39 1 1.2240 7.0080 1.8193 40 1 -1.9404 4.3631 5.0805 41 1 -2.6906 3.9355 3.5240 42 1 -2.2324 1.5383 3.9607 43 1 -1.4822 1.9653 5.5174 44 1 -3.2206 2.2471 5.2608 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140689127.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:00 Heat of formation + Delta-G solvation = -54.289031 kcal Electronic energy + Delta-G solvation = -24460.103595 eV Core-core repulsion = 20991.856095 eV Total energy + Delta-G solvation = -3468.247499 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.36378 -40.95537 -38.00813 -37.61777 -35.60644 -33.25377 -32.78877 -31.97464 -31.33359 -29.32183 -27.63867 -25.70154 -24.50902 -23.19185 -22.57052 -21.83626 -21.46722 -20.90652 -19.65098 -18.67660 -17.87519 -17.63809 -16.78104 -16.32053 -16.04089 -15.66048 -15.45492 -15.14396 -14.82939 -14.71985 -14.42427 -14.31430 -13.80986 -13.77998 -13.60537 -13.45594 -13.07467 -13.04465 -12.94137 -12.78128 -12.55418 -12.39227 -12.33152 -12.06070 -11.91381 -11.82589 -11.79489 -11.65280 -11.57102 -11.30699 -10.48915 -9.91530 -9.07709 -8.64600 -7.83896 -5.38812 0.20866 1.47199 1.53078 1.55310 1.58822 1.74190 2.16431 2.26128 2.54865 3.26232 3.73466 3.82919 3.99445 4.06936 4.12339 4.16300 4.32424 4.35277 4.35703 4.40569 4.44230 4.55202 4.73082 4.81494 4.86425 4.90985 4.96901 5.03653 5.06064 5.06537 5.13299 5.18106 5.28058 5.36628 5.38602 5.47891 5.56483 5.61396 5.74467 5.87826 6.07748 6.43047 6.58379 6.68821 7.15437 7.84274 8.33021 9.13103 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.013887 B = 0.005294 C = 0.004229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.860987 B = 5288.020172 C = 6619.770605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.117 4.117 3 C -0.125 4.125 4 C 0.142 3.858 5 N -0.587 5.587 6 C -0.262 4.262 7 H 0.049 0.951 8 C -0.018 4.018 9 N -0.906 5.906 10 Si 0.938 3.062 11 H -0.283 1.283 12 H -0.290 1.290 13 H -0.281 1.281 14 C 0.191 3.809 15 C 0.095 3.905 16 C -0.225 4.225 17 C -0.099 4.099 18 C -0.080 4.080 19 C 0.547 3.453 20 O -0.536 6.536 21 O -0.363 6.363 22 C 0.054 3.946 23 C -0.145 4.145 24 N -0.508 5.508 25 H 0.424 0.576 26 H 0.042 0.958 27 H 0.068 0.932 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.048 0.952 32 H 0.031 0.969 33 H 0.040 0.960 34 H 0.052 0.948 35 H 0.255 0.745 36 H 0.099 0.901 37 H 0.057 0.943 38 H 0.126 0.874 39 H 0.151 0.849 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.069 0.931 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.785 -6.889 9.331 17.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.155 4.155 3 C -0.165 4.165 4 C 0.017 3.983 5 N -0.306 5.306 6 C -0.392 4.392 7 H 0.067 0.933 8 C -0.216 4.216 9 N -0.550 5.550 10 Si 0.767 3.233 11 H -0.210 1.210 12 H -0.216 1.216 13 H -0.207 1.207 14 C 0.064 3.936 15 C -0.029 4.029 16 C -0.249 4.249 17 C -0.126 4.126 18 C -0.189 4.189 19 C 0.395 3.605 20 O -0.427 6.427 21 O -0.280 6.280 22 C -0.019 4.019 23 C -0.202 4.202 24 N -0.105 5.105 25 H 0.264 0.736 26 H 0.061 0.939 27 H 0.087 0.913 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.066 0.934 32 H 0.050 0.950 33 H 0.058 0.942 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.117 0.883 37 H 0.075 0.925 38 H 0.144 0.856 39 H 0.169 0.831 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -12.925 -6.724 9.448 17.365 hybrid contribution -0.019 0.895 -0.829 1.220 sum -12.944 -5.829 8.619 16.608 Atomic orbital electron populations 1.21730 0.95447 1.01964 1.01223 1.21461 0.96124 0.95670 1.02274 1.22064 0.97552 0.96744 1.00133 1.21107 0.92531 0.85122 0.99579 1.43937 1.75889 1.09398 1.01412 1.19008 1.09736 1.19879 0.90595 0.93319 1.25409 0.94012 1.02499 0.99709 1.70004 1.07504 1.36055 1.41451 0.85801 0.76792 0.80645 0.80036 1.20967 1.21554 1.20652 1.19788 0.92112 0.95218 0.86529 1.22117 0.91301 0.95047 0.94472 1.20662 0.99112 0.95656 1.09430 1.21412 0.94756 0.97473 0.98924 1.19175 0.92310 0.90782 1.16668 1.19714 0.84594 0.81177 0.75008 1.90837 1.56240 1.37654 1.57982 1.86575 1.38503 1.34666 1.68263 1.23354 0.80183 1.01273 0.97056 1.21831 1.03583 0.92817 1.01948 1.41812 1.13598 1.11130 1.43990 0.73584 0.93929 0.91312 0.93012 0.92205 0.90967 0.93356 0.95025 0.94163 0.92968 0.93561 0.88327 0.92515 0.85628 0.83109 0.90965 0.91291 0.91393 0.91207 0.87757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.22 9.91 71.98 0.71 -2.51 16 2 C -0.12 -2.92 5.93 30.60 0.18 -2.74 16 3 C -0.12 -4.07 5.54 30.60 0.17 -3.90 16 4 C 0.14 5.34 5.71 86.38 0.49 5.83 16 5 N -0.59 -26.71 2.45 -706.33 -1.73 -28.44 16 6 C -0.26 -13.62 9.44 84.03 0.79 -12.83 16 7 H 0.05 2.62 7.94 -2.91 -0.02 2.59 16 8 C -0.02 -0.95 4.96 84.86 0.42 -0.53 16 9 N -0.91 -49.23 11.31 21.65 0.24 -48.98 16 10 Si 0.94 43.44 29.62 68.60 2.03 45.47 16 11 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 12 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 13 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 14 C 0.19 8.16 5.90 85.64 0.51 8.66 16 15 C 0.09 3.72 6.61 41.44 0.27 3.99 16 16 C -0.22 -9.22 10.71 22.01 0.24 -8.99 16 17 C -0.10 -3.68 10.66 22.59 0.24 -3.44 16 18 C -0.08 -2.79 7.10 40.32 0.29 -2.51 16 19 C 0.55 18.02 7.93 69.97 0.55 18.58 16 20 O -0.54 -19.63 16.68 19.43 0.32 -19.30 16 21 O -0.36 -9.80 10.23 -58.07 -0.59 -10.40 16 22 C 0.05 1.10 6.20 71.98 0.45 1.54 16 23 C -0.14 -1.89 10.29 71.98 0.74 -1.15 16 24 N -0.51 -17.02 5.15 -172.32 -0.89 -17.91 16 25 H 0.42 12.11 7.89 -92.71 -0.73 11.38 16 26 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 29 H 0.06 1.48 8.14 -2.38 -0.02 1.47 16 30 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.05 1.54 5.95 -2.39 -0.01 1.52 16 32 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.04 1.59 8.04 -2.39 -0.02 1.57 16 34 H 0.05 1.76 7.86 -2.39 -0.02 1.74 16 35 H 0.25 13.51 8.31 -92.71 -0.77 12.74 16 36 H 0.10 4.89 5.32 -2.39 -0.01 4.88 16 37 H 0.06 2.15 7.83 -2.39 -0.02 2.13 16 38 H 0.13 5.44 8.06 -2.91 -0.02 5.42 16 39 H 0.15 5.16 8.06 -2.91 -0.02 5.14 16 40 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -60.49 368.47 5.69 -54.80 By element: Atomic # 1 Polarization: 24.50 SS G_CDS: 0.25 Total: 24.75 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: 6.06 Total: 0.01 kcal Atomic # 7 Polarization: -92.96 SS G_CDS: -2.37 Total: -95.33 kcal Atomic # 8 Polarization: -29.43 SS G_CDS: -0.27 Total: -29.70 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -60.49 5.69 -54.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140689127.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.510 kcal (2) G-P(sol) polarization free energy of solvation -60.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds