Wall clock time and date at job start Tue Mar 31 2020 07:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47381 * 2 1 4 4 C 1.52998 * 109.47342 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.46927 * 184.79105 * 4 3 2 6 6 C 1.36936 * 120.00283 * 276.22841 * 5 4 3 7 7 H 1.08000 * 119.99728 * 34.77366 * 6 5 4 8 8 C 1.38813 * 120.00309 * 214.78355 * 6 5 4 9 9 N 1.31622 * 119.99861 * 22.49458 * 8 6 5 10 10 Si 1.86799 * 120.00069 * 202.49909 * 8 6 5 11 11 H 1.48503 * 109.47093 * 89.99777 * 10 8 6 12 12 H 1.48505 * 109.46984 * 209.99890 * 10 8 6 13 13 H 1.48502 * 109.47139 * 329.99806 * 10 8 6 14 14 C 1.46502 * 120.00046 * 96.23266 * 5 4 3 15 15 C 1.50704 * 109.46883 * 275.65641 * 14 5 4 16 16 C 1.39140 * 120.81085 * 94.18338 * 15 14 5 17 17 O 1.35905 * 120.47415 * 359.95997 * 16 15 14 18 18 C 1.38708 * 119.05097 * 179.97438 * 16 15 14 19 19 C 1.50700 * 119.65845 * 179.97438 * 18 16 15 20 20 N 1.31845 * 120.68269 * 0.02744 * 18 16 15 21 21 C 1.31840 * 121.78119 * 359.97438 * 20 18 16 22 22 C 1.38254 * 120.88913 * 359.97438 * 21 20 18 23 23 C 1.50702 * 120.39036 * 180.02562 * 22 21 20 24 24 O 1.42901 * 109.47218 * 5.35040 * 23 22 21 25 25 H 1.09002 * 109.47000 * 300.00116 * 1 2 3 26 26 H 1.08998 * 109.47585 * 59.99894 * 1 2 3 27 27 H 1.08996 * 109.47468 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47000 * 239.99884 * 2 1 3 29 29 H 1.08998 * 109.47585 * 120.00106 * 2 1 3 30 30 H 1.09002 * 109.47148 * 59.99975 * 3 2 1 31 31 H 1.09009 * 109.47213 * 300.00195 * 3 2 1 32 32 H 1.08999 * 109.47327 * 64.79407 * 4 3 2 33 33 H 1.08993 * 109.46907 * 304.78903 * 4 3 2 34 34 H 0.97000 * 120.00042 * 184.96082 * 9 8 6 35 35 H 1.08997 * 109.47454 * 155.65771 * 14 5 4 36 36 H 1.08998 * 109.47238 * 35.65745 * 14 5 4 37 37 H 0.96701 * 114.00160 * 264.72747 * 17 16 15 38 38 H 1.08996 * 109.47295 * 270.02600 * 19 18 16 39 39 H 1.09005 * 109.47057 * 30.02868 * 19 18 16 40 40 H 1.09004 * 109.47261 * 150.02603 * 19 18 16 41 41 H 1.08000 * 119.55787 * 179.97438 * 21 20 18 42 42 H 1.09001 * 109.46887 * 125.35436 * 23 22 21 43 43 H 1.08997 * 109.46969 * 245.35268 * 23 22 21 44 44 H 0.96697 * 114.00130 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0583 2.8188 0.1147 6 6 4.1648 3.6035 -1.0025 7 1 3.4456 3.5049 -1.8021 8 6 5.1972 4.5255 -1.1073 9 7 6.2955 4.3671 -0.3994 10 14 5.0278 5.9912 -2.2529 11 1 4.4200 7.1281 -1.5157 12 1 6.3691 6.3860 -2.7533 13 1 4.1595 5.6247 -3.4006 14 6 4.4329 3.3558 1.4253 15 6 3.2030 3.8716 2.1270 16 6 2.4988 3.0654 3.0159 17 8 2.9090 1.7943 3.2670 18 6 1.3719 3.5775 3.6420 19 6 0.5986 2.7161 4.6069 20 7 0.9699 4.8098 3.4009 21 6 1.6142 5.5993 2.5645 22 6 2.7464 5.1603 1.9035 23 6 3.4746 6.0725 0.9502 24 8 2.8829 7.3726 0.9893 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 3.9330 1.0049 -0.9307 33 1 3.9336 0.8560 0.8430 34 1 6.9865 5.0475 -0.4174 35 1 5.1449 4.1705 1.2942 36 1 4.8891 2.5675 2.0241 37 1 2.4649 1.1243 2.7293 38 1 -0.1722 2.1669 4.0662 39 1 1.2765 2.0116 5.0887 40 1 0.1321 3.3469 5.3636 41 1 1.2529 6.6026 2.3933 42 1 4.5225 6.1412 1.2421 43 1 3.4047 5.6717 -0.0610 44 1 3.3024 8.0136 0.3991 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140868983.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:11 Heat of formation + Delta-G solvation = -56.109069 kcal Electronic energy + Delta-G solvation = -25745.771437 eV Core-core repulsion = 22277.445015 eV Total energy + Delta-G solvation = -3468.326422 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.23485 -37.07506 -36.73520 -35.86860 -34.43374 -32.76083 -31.49578 -30.73893 -28.36666 -27.97776 -25.98112 -24.65827 -24.00484 -22.02526 -21.38689 -20.46637 -19.78528 -17.78054 -17.40961 -16.88183 -15.72457 -15.49318 -15.12832 -14.84518 -14.70824 -14.28732 -13.75821 -13.69466 -13.61027 -13.48793 -13.29797 -12.58679 -12.32134 -12.23006 -12.06093 -11.91743 -11.85918 -11.62109 -11.29759 -10.96843 -10.88331 -10.81863 -10.70591 -10.63534 -10.54370 -10.25330 -10.05321 -9.94813 -9.73185 -8.82617 -8.62957 -8.52934 -8.00953 -6.85930 -6.00493 -3.56184 1.55171 1.82568 3.10741 3.28124 3.28644 4.09843 4.27063 4.48718 4.75024 4.89820 5.01197 5.17160 5.24133 5.26289 5.46175 5.56196 5.63748 5.64687 5.78265 5.82660 5.85138 5.95035 6.03006 6.04440 6.18879 6.20475 6.25550 6.27168 6.31589 6.41619 6.45678 6.49408 6.58164 6.76716 6.83132 6.98437 7.11227 7.14597 7.40479 7.61089 7.96371 8.04405 8.26320 8.50906 8.94660 9.56924 10.15809 10.97373 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.012535 B = 0.007916 C = 0.005830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.143701 B = 3536.229484 C = 4801.349538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C -0.141 4.141 4 C 0.146 3.854 5 N -0.573 5.573 6 C -0.255 4.255 7 H 0.064 0.936 8 C 0.010 3.990 9 N -0.877 5.877 10 Si 0.882 3.118 11 H -0.283 1.283 12 H -0.289 1.289 13 H -0.275 1.275 14 C 0.174 3.826 15 C -0.051 4.051 16 C 0.052 3.948 17 O -0.486 6.486 18 C 0.083 3.917 19 C -0.096 4.096 20 N -0.486 5.486 21 C 0.100 3.900 22 C -0.110 4.110 23 C 0.111 3.889 24 O -0.582 6.582 25 H 0.049 0.951 26 H 0.051 0.949 27 H 0.047 0.953 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.049 0.951 31 H 0.057 0.943 32 H 0.047 0.953 33 H 0.040 0.960 34 H 0.257 0.743 35 H 0.110 0.890 36 H 0.046 0.954 37 H 0.379 0.621 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.158 0.842 42 H 0.060 0.940 43 H 0.097 0.903 44 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.298 -3.308 3.880 8.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.181 4.181 4 C 0.020 3.980 5 N -0.291 5.291 6 C -0.384 4.384 7 H 0.082 0.918 8 C -0.190 4.190 9 N -0.519 5.519 10 Si 0.710 3.290 11 H -0.210 1.210 12 H -0.215 1.215 13 H -0.199 1.199 14 C 0.047 3.953 15 C -0.062 4.062 16 C 0.005 3.995 17 O -0.294 6.294 18 C -0.055 4.055 19 C -0.153 4.153 20 N -0.197 5.197 21 C -0.056 4.056 22 C -0.113 4.113 23 C 0.034 3.966 24 O -0.388 6.388 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.127 0.873 36 H 0.065 0.935 37 H 0.235 0.765 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.175 0.825 42 H 0.078 0.922 43 H 0.115 0.885 44 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -7.801 -3.023 5.073 9.784 hybrid contribution 0.677 0.602 -1.803 2.018 sum -7.123 -2.421 3.271 8.204 Atomic orbital electron populations 1.21767 0.96624 1.00737 1.01606 1.21522 0.95130 0.98020 1.01467 1.22279 0.99592 0.94608 1.01589 1.20953 0.91009 0.86747 0.99320 1.43697 1.75417 1.08034 1.01991 1.19114 1.06079 1.16087 0.97159 0.91822 1.25097 0.93753 1.01605 0.98544 1.70099 1.05199 1.33016 1.43543 0.86713 0.77384 0.83508 0.81370 1.20986 1.21484 1.19945 1.20001 0.90565 1.00165 0.84525 1.21804 1.00090 0.92395 0.91909 1.18958 0.95142 0.86758 0.98657 1.84765 1.66688 1.13589 1.64407 1.21546 0.93474 0.92516 0.97976 1.20541 0.99205 0.98190 0.97372 1.67483 1.31494 1.04110 1.16651 1.22463 0.91976 0.99120 0.92057 1.20494 0.97369 0.94519 0.98918 1.21312 0.94476 0.80945 0.99835 1.86259 1.61865 1.22153 1.68525 0.93165 0.93019 0.93363 0.92271 0.92576 0.93255 0.92404 0.93460 0.94197 0.93286 0.87275 0.93523 0.76533 0.91335 0.90650 0.91049 0.82501 0.92227 0.88527 0.77508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.91 37.15 0.37 -1.41 16 2 C -0.12 -1.61 5.93 -26.74 -0.16 -1.77 16 3 C -0.14 -2.33 5.19 -26.73 -0.14 -2.47 16 4 C 0.15 2.78 5.72 -4.04 -0.02 2.76 16 5 N -0.57 -12.85 2.44 -174.61 -0.43 -13.27 16 6 C -0.25 -6.24 8.03 -15.06 -0.12 -6.36 16 7 H 0.06 1.60 7.92 -52.49 -0.42 1.18 16 8 C 0.01 0.26 3.56 -17.43 -0.06 0.19 16 9 N -0.88 -22.70 11.42 55.49 0.63 -22.07 16 10 Si 0.88 19.22 27.63 -169.99 -4.70 14.53 16 11 H -0.28 -5.70 6.87 56.52 0.39 -5.31 16 12 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 13 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 14 C 0.17 3.85 4.83 -5.19 -0.03 3.83 16 15 C -0.05 -1.04 5.14 -104.18 -0.53 -1.58 16 16 C 0.05 0.97 5.32 -39.07 -0.21 0.76 16 17 O -0.49 -8.01 11.67 -19.44 -0.23 -8.23 16 18 C 0.08 1.48 6.80 -82.41 -0.56 0.92 16 19 C -0.10 -1.30 9.96 36.01 0.36 -0.95 16 20 N -0.49 -9.28 10.27 -9.35 -0.10 -9.38 16 21 C 0.10 1.96 10.54 -17.54 -0.18 1.78 16 22 C -0.11 -2.26 5.89 -104.51 -0.62 -2.88 16 23 C 0.11 2.26 5.13 36.01 0.18 2.44 16 24 O -0.58 -10.41 12.18 -35.23 -0.43 -10.84 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.86 5.55 -51.93 -0.29 0.57 16 31 H 0.06 1.06 8.14 -51.92 -0.42 0.64 16 32 H 0.05 0.94 8.09 -51.93 -0.42 0.52 16 33 H 0.04 0.72 7.89 -51.93 -0.41 0.31 16 34 H 0.26 6.46 8.32 -40.82 -0.34 6.12 16 35 H 0.11 2.68 4.08 -51.93 -0.21 2.47 16 36 H 0.05 1.05 7.31 -51.93 -0.38 0.67 16 37 H 0.38 5.15 8.05 45.56 0.37 5.51 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.07 0.95 7.52 -51.93 -0.39 0.56 16 40 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.16 2.89 7.03 -52.49 -0.37 2.52 16 42 H 0.06 1.26 7.32 -51.93 -0.38 0.88 16 43 H 0.10 2.13 3.63 -51.93 -0.19 1.95 16 44 H 0.38 5.40 9.07 45.56 0.41 5.82 16 LS Contribution 345.55 15.07 5.21 5.21 Total: -1.00 -27.26 345.55 -6.96 -34.22 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: -5.20 Total: 14.58 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -1.72 Total: -4.74 kcal Atomic # 7 Polarization: -44.83 SS G_CDS: 0.11 Total: -44.72 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -0.66 Total: -19.07 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -4.70 Total: 14.53 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -27.26 -6.96 -34.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140868983.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.894 kcal (2) G-P(sol) polarization free energy of solvation -27.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds