Wall clock time and date at job start Tue Mar 31 2020 07:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47381 * 2 1 4 4 C 1.52998 * 109.47342 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.46927 * 184.79105 * 4 3 2 6 6 C 1.36936 * 120.00283 * 276.22841 * 5 4 3 7 7 H 1.08000 * 119.99728 * 34.77366 * 6 5 4 8 8 C 1.38813 * 120.00309 * 214.78355 * 6 5 4 9 9 N 1.31622 * 119.99861 * 22.49458 * 8 6 5 10 10 Si 1.86799 * 120.00069 * 202.49909 * 8 6 5 11 11 H 1.48503 * 109.47093 * 89.99777 * 10 8 6 12 12 H 1.48505 * 109.46984 * 209.99890 * 10 8 6 13 13 H 1.48502 * 109.47139 * 329.99806 * 10 8 6 14 14 C 1.46502 * 120.00046 * 96.23266 * 5 4 3 15 15 C 1.50704 * 109.46883 * 275.65641 * 14 5 4 16 16 C 1.39140 * 120.81085 * 94.18338 * 15 14 5 17 17 O 1.35905 * 120.47415 * 359.95997 * 16 15 14 18 18 C 1.38708 * 119.05097 * 179.97438 * 16 15 14 19 19 C 1.50700 * 119.65845 * 179.97438 * 18 16 15 20 20 N 1.31845 * 120.68269 * 0.02744 * 18 16 15 21 21 C 1.31840 * 121.78119 * 359.97438 * 20 18 16 22 22 C 1.38254 * 120.88913 * 359.97438 * 21 20 18 23 23 C 1.50702 * 120.39036 * 180.02562 * 22 21 20 24 24 O 1.42901 * 109.47218 * 5.35040 * 23 22 21 25 25 H 1.09002 * 109.47000 * 300.00116 * 1 2 3 26 26 H 1.08998 * 109.47585 * 59.99894 * 1 2 3 27 27 H 1.08996 * 109.47468 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47000 * 239.99884 * 2 1 3 29 29 H 1.08998 * 109.47585 * 120.00106 * 2 1 3 30 30 H 1.09002 * 109.47148 * 59.99975 * 3 2 1 31 31 H 1.09009 * 109.47213 * 300.00195 * 3 2 1 32 32 H 1.08999 * 109.47327 * 64.79407 * 4 3 2 33 33 H 1.08993 * 109.46907 * 304.78903 * 4 3 2 34 34 H 0.97000 * 120.00042 * 184.96082 * 9 8 6 35 35 H 1.08997 * 109.47454 * 155.65771 * 14 5 4 36 36 H 1.08998 * 109.47238 * 35.65745 * 14 5 4 37 37 H 0.96701 * 114.00160 * 264.72747 * 17 16 15 38 38 H 1.08996 * 109.47295 * 270.02600 * 19 18 16 39 39 H 1.09005 * 109.47057 * 30.02868 * 19 18 16 40 40 H 1.09004 * 109.47261 * 150.02603 * 19 18 16 41 41 H 1.08000 * 119.55787 * 179.97438 * 21 20 18 42 42 H 1.09001 * 109.46887 * 125.35436 * 23 22 21 43 43 H 1.08997 * 109.46969 * 245.35268 * 23 22 21 44 44 H 0.96697 * 114.00130 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0583 2.8188 0.1147 6 6 4.1648 3.6035 -1.0025 7 1 3.4456 3.5049 -1.8021 8 6 5.1972 4.5255 -1.1073 9 7 6.2955 4.3671 -0.3994 10 14 5.0278 5.9912 -2.2529 11 1 4.4200 7.1281 -1.5157 12 1 6.3691 6.3860 -2.7533 13 1 4.1595 5.6247 -3.4006 14 6 4.4329 3.3558 1.4253 15 6 3.2030 3.8716 2.1270 16 6 2.4988 3.0654 3.0159 17 8 2.9090 1.7943 3.2670 18 6 1.3719 3.5775 3.6420 19 6 0.5986 2.7161 4.6069 20 7 0.9699 4.8098 3.4009 21 6 1.6142 5.5993 2.5645 22 6 2.7464 5.1603 1.9035 23 6 3.4746 6.0725 0.9502 24 8 2.8829 7.3726 0.9893 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 3.9330 1.0049 -0.9307 33 1 3.9336 0.8560 0.8430 34 1 6.9865 5.0475 -0.4174 35 1 5.1449 4.1705 1.2942 36 1 4.8891 2.5675 2.0241 37 1 2.4649 1.1243 2.7293 38 1 -0.1722 2.1669 4.0662 39 1 1.2765 2.0116 5.0887 40 1 0.1321 3.3469 5.3636 41 1 1.2529 6.6026 2.3933 42 1 4.5225 6.1412 1.2421 43 1 3.4047 5.6717 -0.0610 44 1 3.3024 8.0136 0.3991 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140868983.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:10 Heat of formation + Delta-G solvation = -75.137385 kcal Electronic energy + Delta-G solvation = -25746.596567 eV Core-core repulsion = 22277.445015 eV Total energy + Delta-G solvation = -3469.151552 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.70896 -38.49467 -38.31593 -37.32903 -35.77526 -34.31366 -33.15221 -32.12741 -29.76433 -29.41870 -27.67250 -26.13353 -25.50900 -23.47129 -22.84943 -21.77649 -21.35788 -19.22195 -18.90279 -18.60995 -17.26297 -16.99051 -16.67946 -16.42301 -16.07921 -15.78180 -15.43897 -15.11892 -15.09813 -14.79039 -14.58985 -13.98804 -13.73007 -13.55534 -13.42916 -13.22687 -13.14899 -13.02958 -12.88248 -12.47358 -12.44790 -12.37618 -12.11865 -12.11105 -11.91485 -11.81491 -11.64565 -11.37258 -11.25779 -10.50524 -10.27983 -10.08658 -9.46329 -8.67706 -7.86788 -5.46378 0.09494 0.29518 1.36262 1.47426 1.52271 2.45603 2.65948 3.05416 3.16721 3.37566 3.52973 3.69676 3.86063 4.01088 4.12577 4.15878 4.29524 4.40061 4.44051 4.53577 4.55463 4.68604 4.74113 4.76782 4.79963 4.84749 4.93098 4.99814 5.03622 5.07437 5.18699 5.19285 5.23168 5.38932 5.47069 5.49438 5.58632 5.62489 5.65730 5.74707 6.39399 6.67416 6.73192 7.04796 7.09411 7.77707 8.32085 9.07854 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.012535 B = 0.007916 C = 0.005830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.143701 B = 3536.229484 C = 4801.349538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.117 4.117 3 C -0.124 4.124 4 C 0.144 3.856 5 N -0.585 5.585 6 C -0.260 4.260 7 H 0.051 0.949 8 C -0.018 4.018 9 N -0.905 5.905 10 Si 0.923 3.077 11 H -0.258 1.258 12 H -0.298 1.298 13 H -0.278 1.278 14 C 0.186 3.814 15 C -0.066 4.066 16 C 0.057 3.943 17 O -0.484 6.484 18 C 0.084 3.916 19 C -0.092 4.092 20 N -0.491 5.491 21 C 0.097 3.903 22 C -0.130 4.130 23 C 0.124 3.876 24 O -0.580 6.580 25 H 0.051 0.949 26 H 0.042 0.958 27 H 0.069 0.931 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.043 0.957 31 H 0.032 0.968 32 H 0.033 0.967 33 H 0.052 0.948 34 H 0.254 0.746 35 H 0.085 0.915 36 H 0.038 0.962 37 H 0.394 0.606 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.079 0.921 41 H 0.166 0.834 42 H 0.044 0.956 43 H 0.078 0.922 44 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.148 -4.164 4.948 11.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.155 4.155 3 C -0.163 4.163 4 C 0.019 3.981 5 N -0.304 5.304 6 C -0.390 4.390 7 H 0.069 0.931 8 C -0.216 4.216 9 N -0.548 5.548 10 Si 0.750 3.250 11 H -0.184 1.184 12 H -0.225 1.225 13 H -0.204 1.204 14 C 0.059 3.941 15 C -0.077 4.077 16 C 0.010 3.990 17 O -0.295 6.295 18 C -0.055 4.055 19 C -0.149 4.149 20 N -0.203 5.203 21 C -0.059 4.059 22 C -0.133 4.133 23 C 0.047 3.953 24 O -0.388 6.388 25 H 0.070 0.930 26 H 0.061 0.939 27 H 0.088 0.912 28 H 0.079 0.921 29 H 0.095 0.905 30 H 0.062 0.938 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.102 0.898 36 H 0.056 0.944 37 H 0.252 0.748 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.098 0.902 41 H 0.183 0.817 42 H 0.062 0.938 43 H 0.096 0.904 44 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -9.680 -3.881 6.139 12.102 hybrid contribution 1.239 0.797 -2.100 2.566 sum -8.440 -3.084 4.039 9.852 Atomic orbital electron populations 1.21735 0.95391 1.02035 1.01269 1.21482 0.96124 0.95346 1.02573 1.22048 0.97365 0.96906 1.00025 1.21058 0.92667 0.85254 0.99099 1.43831 1.75777 1.09155 1.01635 1.19131 1.05577 1.16757 0.97530 0.93108 1.25518 0.93336 1.03143 0.99616 1.70189 1.05852 1.33550 1.45255 0.86072 0.76704 0.82196 0.80020 1.18378 1.22484 1.20360 1.19686 0.91008 0.98913 0.84470 1.21694 0.99852 0.93076 0.93035 1.18947 0.94941 0.87290 0.97854 1.84730 1.67012 1.13104 1.64609 1.22176 0.93193 0.92355 0.97768 1.20651 0.99521 0.97943 0.96765 1.67574 1.31522 1.04680 1.16512 1.22572 0.91640 0.99644 0.92029 1.20585 0.98167 0.94792 0.99740 1.20975 0.93764 0.81865 0.98712 1.86236 1.61834 1.21576 1.69136 0.92996 0.93920 0.91236 0.92127 0.90542 0.93840 0.94874 0.94810 0.92921 0.93671 0.89779 0.94387 0.74773 0.89205 0.89339 0.90196 0.81736 0.93838 0.90422 0.75688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.09 9.91 71.98 0.71 -2.38 16 2 C -0.12 -2.79 5.93 30.59 0.18 -2.60 16 3 C -0.12 -4.00 5.19 30.59 0.16 -3.84 16 4 C 0.14 5.50 5.72 86.38 0.49 5.99 16 5 N -0.58 -26.68 2.44 -706.34 -1.73 -28.41 16 6 C -0.26 -13.05 8.03 84.03 0.67 -12.37 16 7 H 0.05 2.64 7.92 -2.91 -0.02 2.62 16 8 C -0.02 -0.90 3.56 84.86 0.30 -0.60 16 9 N -0.91 -48.21 11.42 21.65 0.25 -47.96 16 10 Si 0.92 39.84 27.63 68.60 1.90 41.74 16 11 H -0.26 -9.98 6.87 99.48 0.68 -9.30 16 12 H -0.30 -13.27 7.11 99.48 0.71 -12.56 16 13 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 14 C 0.19 8.38 4.83 85.63 0.41 8.79 16 15 C -0.07 -2.68 5.14 -19.58 -0.10 -2.78 16 16 C 0.06 2.03 5.32 22.60 0.12 2.15 16 17 O -0.48 -14.82 11.67 -92.48 -1.08 -15.90 16 18 C 0.08 2.76 6.80 42.67 0.29 3.05 16 19 C -0.09 -2.16 9.96 71.24 0.71 -1.45 16 20 N -0.49 -17.83 10.27 -183.50 -1.88 -19.72 16 21 C 0.10 3.71 10.54 84.70 0.89 4.60 16 22 C -0.13 -5.33 5.89 -19.79 -0.12 -5.45 16 23 C 0.12 5.09 5.13 71.24 0.37 5.46 16 24 O -0.58 -20.25 12.18 -148.98 -1.82 -22.07 16 25 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.04 0.96 8.14 -2.39 -0.02 0.95 16 27 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.04 1.45 5.55 -2.39 -0.01 1.44 16 31 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 32 H 0.03 1.36 8.09 -2.39 -0.02 1.34 16 33 H 0.05 1.84 7.89 -2.39 -0.02 1.82 16 34 H 0.25 13.14 8.32 -92.71 -0.77 12.37 16 35 H 0.08 4.28 4.08 -2.39 -0.01 4.27 16 36 H 0.04 1.73 7.31 -2.39 -0.02 1.71 16 37 H 0.39 9.52 8.05 -74.06 -0.60 8.92 16 38 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.09 1.87 7.52 -2.38 -0.02 1.86 16 40 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.17 5.88 7.03 -2.91 -0.02 5.86 16 42 H 0.04 1.90 7.32 -2.39 -0.02 1.88 16 43 H 0.08 3.48 3.63 -2.39 -0.01 3.47 16 44 H 0.39 10.72 9.07 -74.06 -0.67 10.05 16 Total: -1.00 -59.06 345.55 0.47 -58.58 By element: Atomic # 1 Polarization: 35.42 SS G_CDS: -0.26 Total: 35.16 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: 5.10 Total: -1.43 kcal Atomic # 7 Polarization: -92.72 SS G_CDS: -3.36 Total: -96.08 kcal Atomic # 8 Polarization: -35.08 SS G_CDS: -2.89 Total: -37.97 kcal Atomic # 14 Polarization: 39.84 SS G_CDS: 1.90 Total: 41.74 kcal Total: -59.06 0.47 -58.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140868983.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.553 kcal (2) G-P(sol) polarization free energy of solvation -59.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds