Wall clock time and date at job start Tue Mar 31 2020 07:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.47140 * 2 1 4 4 C 1.53000 * 109.46919 * 184.73553 * 3 2 1 5 5 N 1.46506 * 109.47098 * 185.11005 * 4 3 2 6 6 C 1.36936 * 120.00279 * 84.43730 * 5 4 3 7 7 H 1.08008 * 119.99622 * 316.56687 * 6 5 4 8 8 C 1.38805 * 120.00244 * 136.57140 * 6 5 4 9 9 N 1.31625 * 119.99819 * 168.64234 * 8 6 5 10 10 Si 1.86794 * 120.00004 * 348.64223 * 8 6 5 11 11 H 1.48499 * 109.47216 * 91.96776 * 10 8 6 12 12 H 1.48503 * 109.47406 * 211.96623 * 10 8 6 13 13 H 1.48498 * 109.47314 * 331.96891 * 10 8 6 14 14 C 1.46498 * 119.99914 * 264.43446 * 5 4 3 15 15 C 1.50706 * 109.47132 * 83.65741 * 14 5 4 16 16 C 1.39796 * 126.51357 * 262.11946 * 15 14 5 17 17 C 1.35497 * 107.83704 * 179.89075 * 16 15 14 18 18 N 1.34951 * 108.98641 * 0.37879 * 17 16 15 19 19 H 0.96999 * 125.63785 * 179.77140 * 18 17 16 20 20 C 1.37704 * 108.73327 * 359.75906 * 18 17 16 21 21 C 1.46488 * 126.26813 * 180.02562 * 20 18 17 22 22 O 1.21620 * 120.00254 * 185.52982 * 21 20 18 23 23 O 1.34891 * 119.99740 * 5.52984 * 21 20 18 24 24 C 1.45198 * 116.99861 * 179.97438 * 23 21 20 25 25 C 1.52998 * 109.47014 * 179.97438 * 24 23 21 26 26 H 1.08993 * 109.47072 * 59.99404 * 1 2 3 27 27 H 1.08997 * 109.47320 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46813 * 299.99845 * 1 2 3 29 29 H 1.09003 * 109.46813 * 240.00155 * 2 1 3 30 30 H 1.09001 * 109.47355 * 120.00451 * 2 1 3 31 31 H 1.09003 * 109.46858 * 64.74075 * 3 2 1 32 32 H 1.08999 * 109.47206 * 304.73206 * 3 2 1 33 33 H 1.08998 * 109.47463 * 65.10740 * 4 3 2 34 34 H 1.09007 * 109.47137 * 305.10519 * 4 3 2 35 35 H 0.96994 * 119.99661 * 179.97438 * 9 8 6 36 36 H 1.08998 * 109.47098 * 203.65958 * 14 5 4 37 37 H 1.09006 * 109.47120 * 323.65953 * 14 5 4 38 38 H 1.07990 * 126.08309 * 0.03676 * 16 15 14 39 39 H 1.08004 * 125.50159 * 180.11931 * 17 16 15 40 40 H 1.08999 * 109.47561 * 299.99851 * 24 23 21 41 41 H 1.09009 * 109.47157 * 60.00087 * 24 23 21 42 42 H 1.09005 * 109.46737 * 179.97438 * 25 24 23 43 43 H 1.08994 * 109.47653 * 299.99764 * 25 24 23 44 44 H 1.08999 * 109.47203 * 60.00630 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5654 1.4440 -0.1191 5 7 4.0634 2.8164 0.0034 6 6 4.2798 3.3583 1.2422 7 1 3.5557 3.2110 2.0300 8 6 5.4295 4.0970 1.4854 9 7 5.5372 4.8016 2.5920 10 14 6.8238 4.0911 0.2425 11 1 6.6474 5.2211 -0.7048 12 1 8.1201 4.2379 0.9519 13 1 6.8126 2.8098 -0.5080 14 6 4.3299 3.6090 -1.1995 15 6 3.0482 4.2399 -1.6796 16 6 2.2145 3.7610 -2.6945 17 6 1.1704 4.6164 -2.8121 18 7 1.3194 5.6166 -1.9185 19 1 0.7110 6.3625 -1.7984 20 6 2.4777 5.4033 -1.2050 21 6 3.0071 6.2552 -0.1374 22 8 4.0948 6.0137 0.3503 23 8 2.2883 7.3074 0.3049 24 6 2.8747 8.1073 1.3653 25 6 1.9213 9.2466 1.7313 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.7477 1.9311 0.9294 32 1 1.6092 1.9802 -0.8445 33 1 3.8547 1.0377 -1.0882 34 1 3.9924 0.8305 0.6743 35 1 6.3408 5.3175 2.7621 36 1 5.0544 4.3895 -0.9672 37 1 4.7307 2.9617 -1.9797 38 1 2.3731 2.8668 -3.2789 39 1 0.3533 4.5164 -3.5113 40 1 3.0458 7.4810 2.2408 41 1 3.8232 8.5230 1.0248 42 1 2.3614 9.8469 2.5277 43 1 1.7506 9.8730 0.8559 44 1 0.9727 8.8315 2.0717 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001144336904.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:21 Heat of formation + Delta-G solvation = -20.760045 kcal Electronic energy + Delta-G solvation = -25381.531094 eV Core-core repulsion = 21914.737521 eV Total energy + Delta-G solvation = -3466.793573 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.83619 -38.99899 -36.42097 -35.58747 -33.95819 -31.60890 -31.38571 -30.66263 -29.19782 -28.00689 -25.59515 -23.82812 -23.36428 -21.69985 -20.85390 -20.37145 -20.04019 -18.75947 -18.21699 -16.34935 -16.04651 -15.85097 -15.09206 -14.86819 -14.73380 -14.12574 -13.72283 -13.52744 -13.11071 -13.04904 -12.85403 -12.74753 -12.68077 -12.46410 -12.16827 -11.95284 -11.70465 -11.54390 -11.38973 -11.19176 -11.09152 -10.54292 -10.51781 -10.33162 -10.29882 -9.89016 -9.74839 -9.64796 -9.45037 -9.35201 -8.28953 -8.15702 -7.65427 -6.46727 -5.67081 -3.18593 1.99151 3.20217 3.26524 3.57598 3.63466 3.64599 3.68548 3.99144 4.82307 5.25188 5.28151 5.29313 5.32917 5.44486 5.44593 5.62307 5.64024 5.66965 5.72492 5.78189 5.89600 6.04482 6.08311 6.12168 6.20106 6.22812 6.30984 6.34603 6.41198 6.45019 6.52032 6.65863 6.70717 6.80562 6.90365 7.07432 7.12439 7.27341 7.30361 7.51123 7.85655 8.38932 8.68942 8.75556 9.26411 10.03870 10.41986 11.48689 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.011090 B = 0.007735 C = 0.005847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.248716 B = 3618.949525 C = 4787.496111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.122 4.122 3 C -0.137 4.137 4 C 0.153 3.847 5 N -0.593 5.593 6 C -0.270 4.270 7 H 0.066 0.934 8 C 0.076 3.924 9 N -0.900 5.900 10 Si 0.889 3.111 11 H -0.284 1.284 12 H -0.311 1.311 13 H -0.274 1.274 14 C 0.183 3.817 15 C -0.063 4.063 16 C -0.212 4.212 17 C 0.012 3.988 18 N -0.536 5.536 19 H 0.415 0.585 20 C -0.025 4.025 21 C 0.505 3.495 22 O -0.417 6.417 23 O -0.382 6.382 24 C 0.069 3.931 25 C -0.148 4.148 26 H 0.049 0.951 27 H 0.044 0.956 28 H 0.049 0.951 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.033 0.967 34 H 0.048 0.952 35 H 0.256 0.744 36 H 0.076 0.924 37 H 0.042 0.958 38 H 0.136 0.864 39 H 0.162 0.838 40 H 0.078 0.922 41 H 0.063 0.937 42 H 0.075 0.925 43 H 0.058 0.942 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.308 1.893 -8.942 13.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.160 4.160 3 C -0.176 4.176 4 C 0.027 3.973 5 N -0.314 5.314 6 C -0.398 4.398 7 H 0.084 0.916 8 C -0.125 4.125 9 N -0.541 5.541 10 Si 0.721 3.279 11 H -0.212 1.212 12 H -0.240 1.240 13 H -0.200 1.200 14 C 0.057 3.943 15 C -0.073 4.073 16 C -0.238 4.238 17 C -0.124 4.124 18 N -0.132 5.132 19 H 0.251 0.749 20 C -0.136 4.136 21 C 0.346 3.654 22 O -0.297 6.297 23 O -0.302 6.302 24 C -0.005 4.005 25 C -0.205 4.205 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.052 0.948 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.094 0.906 37 H 0.060 0.940 38 H 0.154 0.846 39 H 0.180 0.820 40 H 0.097 0.903 41 H 0.081 0.919 42 H 0.093 0.907 43 H 0.077 0.923 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.852 2.071 -8.545 13.205 hybrid contribution 0.246 0.571 -0.508 0.803 sum -9.606 2.642 -9.054 13.462 Atomic orbital electron populations 1.21748 0.96902 1.00403 1.01436 1.21498 0.94914 0.98507 1.01079 1.22183 0.99196 0.94295 1.01967 1.20872 0.91635 0.86484 0.98284 1.44029 1.77183 1.08301 1.01839 1.18442 1.02325 1.31566 0.87446 0.91637 1.25213 0.96474 0.96226 0.94596 1.69745 1.27873 1.30309 1.26163 0.86810 0.81683 0.77779 0.81626 1.21213 1.24034 1.19980 1.19984 0.90967 0.94395 0.88981 1.21155 0.99751 0.91931 0.94460 1.20694 0.97089 1.02388 1.03597 1.21693 1.01797 0.91332 0.97585 1.41794 1.20172 1.21988 1.29254 0.74861 1.19281 0.92379 1.00826 1.01132 1.19834 0.84647 0.79134 0.81816 1.91180 1.19179 1.66864 1.52467 1.86429 1.50573 1.40550 1.52651 1.22839 0.96143 0.91899 0.89665 1.21773 1.00036 0.97110 1.01553 0.93207 0.93688 0.93139 0.92815 0.92593 0.92483 0.92437 0.94847 0.93325 0.93393 0.90600 0.93991 0.84642 0.82032 0.90332 0.91905 0.90656 0.92271 0.91919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.91 37.16 0.37 -1.57 16 2 C -0.12 -1.82 5.93 -26.73 -0.16 -1.98 16 3 C -0.14 -2.53 5.51 -26.73 -0.15 -2.68 16 4 C 0.15 3.19 5.71 -4.04 -0.02 3.16 16 5 N -0.59 -14.55 2.03 -174.60 -0.35 -14.91 16 6 C -0.27 -7.72 8.92 -15.06 -0.13 -7.86 16 7 H 0.07 2.09 8.06 -52.48 -0.42 1.67 16 8 C 0.08 2.26 3.23 -17.43 -0.06 2.21 16 9 N -0.90 -27.98 13.85 55.49 0.77 -27.21 16 10 Si 0.89 24.02 24.10 -169.99 -4.10 19.92 16 11 H -0.28 -7.69 6.70 56.52 0.38 -7.31 16 12 H -0.31 -8.53 7.11 56.52 0.40 -8.13 16 13 H -0.27 -7.17 7.04 56.52 0.40 -6.77 16 14 C 0.18 4.23 4.03 -5.19 -0.02 4.21 16 15 C -0.06 -1.27 5.51 -104.13 -0.57 -1.85 16 16 C -0.21 -3.44 9.69 -39.98 -0.39 -3.83 16 17 C 0.01 0.16 11.87 -17.16 -0.20 -0.04 16 18 N -0.54 -8.06 6.07 -9.52 -0.06 -8.11 16 19 H 0.41 4.99 8.96 -40.82 -0.37 4.62 16 20 C -0.03 -0.51 7.10 -81.99 -0.58 -1.09 16 21 C 0.51 11.22 7.93 34.05 0.27 11.49 16 22 O -0.42 -10.87 10.39 -19.36 -0.20 -11.08 16 23 O -0.38 -7.27 10.23 -41.02 -0.42 -7.69 16 24 C 0.07 1.18 6.20 37.16 0.23 1.41 16 25 C -0.15 -1.83 10.29 37.16 0.38 -1.45 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.06 1.07 6.73 -51.93 -0.35 0.72 16 33 H 0.03 0.63 7.90 -51.93 -0.41 0.22 16 34 H 0.05 1.04 8.09 -51.93 -0.42 0.62 16 35 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 36 H 0.08 1.97 2.39 -51.93 -0.12 1.85 16 37 H 0.04 0.89 7.96 -51.93 -0.41 0.48 16 38 H 0.14 1.94 8.06 -52.49 -0.42 1.52 16 39 H 0.16 1.49 8.06 -52.48 -0.42 1.07 16 40 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 41 H 0.06 1.09 8.14 -51.92 -0.42 0.67 16 42 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 353.43 15.07 5.33 5.33 Total: -1.00 -33.61 353.43 -7.23 -40.85 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -7.16 Total: 2.75 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: -1.04 Total: 0.15 kcal Atomic # 7 Polarization: -50.59 SS G_CDS: 0.36 Total: -50.23 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: -0.62 Total: -18.76 kcal Atomic # 14 Polarization: 24.02 SS G_CDS: -4.10 Total: 19.92 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.61 -7.23 -40.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144336904.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.089 kcal (2) G-P(sol) polarization free energy of solvation -33.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds