Wall clock time and date at job start Tue Mar 31 2020 07:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.47140 * 2 1 4 4 C 1.53000 * 109.46919 * 184.73553 * 3 2 1 5 5 N 1.46506 * 109.47098 * 185.11005 * 4 3 2 6 6 C 1.36936 * 120.00279 * 84.43730 * 5 4 3 7 7 H 1.08008 * 119.99622 * 316.56687 * 6 5 4 8 8 C 1.38805 * 120.00244 * 136.57140 * 6 5 4 9 9 N 1.31625 * 119.99819 * 168.64234 * 8 6 5 10 10 Si 1.86794 * 120.00004 * 348.64223 * 8 6 5 11 11 H 1.48499 * 109.47216 * 91.96776 * 10 8 6 12 12 H 1.48503 * 109.47406 * 211.96623 * 10 8 6 13 13 H 1.48498 * 109.47314 * 331.96891 * 10 8 6 14 14 C 1.46498 * 119.99914 * 264.43446 * 5 4 3 15 15 C 1.50706 * 109.47132 * 83.65741 * 14 5 4 16 16 C 1.39796 * 126.51357 * 262.11946 * 15 14 5 17 17 C 1.35497 * 107.83704 * 179.89075 * 16 15 14 18 18 N 1.34951 * 108.98641 * 0.37879 * 17 16 15 19 19 H 0.96999 * 125.63785 * 179.77140 * 18 17 16 20 20 C 1.37704 * 108.73327 * 359.75906 * 18 17 16 21 21 C 1.46488 * 126.26813 * 180.02562 * 20 18 17 22 22 O 1.21620 * 120.00254 * 185.52982 * 21 20 18 23 23 O 1.34891 * 119.99740 * 5.52984 * 21 20 18 24 24 C 1.45198 * 116.99861 * 179.97438 * 23 21 20 25 25 C 1.52998 * 109.47014 * 179.97438 * 24 23 21 26 26 H 1.08993 * 109.47072 * 59.99404 * 1 2 3 27 27 H 1.08997 * 109.47320 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46813 * 299.99845 * 1 2 3 29 29 H 1.09003 * 109.46813 * 240.00155 * 2 1 3 30 30 H 1.09001 * 109.47355 * 120.00451 * 2 1 3 31 31 H 1.09003 * 109.46858 * 64.74075 * 3 2 1 32 32 H 1.08999 * 109.47206 * 304.73206 * 3 2 1 33 33 H 1.08998 * 109.47463 * 65.10740 * 4 3 2 34 34 H 1.09007 * 109.47137 * 305.10519 * 4 3 2 35 35 H 0.96994 * 119.99661 * 179.97438 * 9 8 6 36 36 H 1.08998 * 109.47098 * 203.65958 * 14 5 4 37 37 H 1.09006 * 109.47120 * 323.65953 * 14 5 4 38 38 H 1.07990 * 126.08309 * 0.03676 * 16 15 14 39 39 H 1.08004 * 125.50159 * 180.11931 * 17 16 15 40 40 H 1.08999 * 109.47561 * 299.99851 * 24 23 21 41 41 H 1.09009 * 109.47157 * 60.00087 * 24 23 21 42 42 H 1.09005 * 109.46737 * 179.97438 * 25 24 23 43 43 H 1.08994 * 109.47653 * 299.99764 * 25 24 23 44 44 H 1.08999 * 109.47203 * 60.00630 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5654 1.4440 -0.1191 5 7 4.0634 2.8164 0.0034 6 6 4.2798 3.3583 1.2422 7 1 3.5557 3.2110 2.0300 8 6 5.4295 4.0970 1.4854 9 7 5.5372 4.8016 2.5920 10 14 6.8238 4.0911 0.2425 11 1 6.6474 5.2211 -0.7048 12 1 8.1201 4.2379 0.9519 13 1 6.8126 2.8098 -0.5080 14 6 4.3299 3.6090 -1.1995 15 6 3.0482 4.2399 -1.6796 16 6 2.2145 3.7610 -2.6945 17 6 1.1704 4.6164 -2.8121 18 7 1.3194 5.6166 -1.9185 19 1 0.7110 6.3625 -1.7984 20 6 2.4777 5.4033 -1.2050 21 6 3.0071 6.2552 -0.1374 22 8 4.0948 6.0137 0.3503 23 8 2.2883 7.3074 0.3049 24 6 2.8747 8.1073 1.3653 25 6 1.9213 9.2466 1.7313 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.7477 1.9311 0.9294 32 1 1.6092 1.9802 -0.8445 33 1 3.8547 1.0377 -1.0882 34 1 3.9924 0.8305 0.6743 35 1 6.3408 5.3175 2.7621 36 1 5.0544 4.3895 -0.9672 37 1 4.7307 2.9617 -1.9797 38 1 2.3731 2.8668 -3.2789 39 1 0.3533 4.5164 -3.5113 40 1 3.0458 7.4810 2.2408 41 1 3.8232 8.5230 1.0248 42 1 2.3614 9.8469 2.5277 43 1 1.7506 9.8730 0.8559 44 1 0.9727 8.8315 2.0717 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001144336904.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:20 Heat of formation + Delta-G solvation = -42.622291 kcal Electronic energy + Delta-G solvation = -25382.479112 eV Core-core repulsion = 21914.737521 eV Total energy + Delta-G solvation = -3467.741591 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.20763 -40.56864 -38.16869 -37.23888 -35.45218 -33.63478 -32.71827 -32.18698 -30.53470 -29.53176 -27.42282 -25.52733 -24.74101 -23.12222 -22.41625 -21.66675 -21.65045 -20.32928 -19.67658 -18.33293 -17.63959 -17.42762 -17.10729 -16.24347 -16.22063 -15.64732 -15.36045 -14.94967 -14.63638 -14.55426 -14.37913 -14.30660 -14.17278 -13.83614 -13.50700 -13.48731 -13.28368 -13.04933 -12.84165 -12.77033 -12.50335 -12.42092 -12.02759 -11.84353 -11.76998 -11.67033 -11.54838 -11.44000 -11.23326 -11.13441 -10.39673 -9.59610 -9.05167 -8.47995 -7.96949 -5.44551 0.51395 1.38454 1.40196 1.50800 1.78901 1.94488 2.37689 2.42824 2.58878 3.41440 3.63645 3.99184 4.01400 4.16365 4.22130 4.27398 4.28623 4.37125 4.39583 4.47410 4.52949 4.62089 4.83925 4.86003 4.90826 4.92895 4.94839 5.03122 5.09669 5.10607 5.14196 5.19626 5.24156 5.43776 5.46535 5.57242 5.62232 5.71579 5.91902 6.07150 6.16534 6.35728 6.74067 7.10781 7.22283 7.85153 8.26620 9.22150 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.011090 B = 0.007735 C = 0.005847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.248716 B = 3618.949525 C = 4787.496111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.116 4.116 3 C -0.120 4.120 4 C 0.148 3.852 5 N -0.604 5.604 6 C -0.247 4.247 7 H 0.017 0.983 8 C 0.035 3.965 9 N -0.942 5.942 10 Si 0.944 3.056 11 H -0.290 1.290 12 H -0.320 1.320 13 H -0.257 1.257 14 C 0.179 3.821 15 C -0.082 4.082 16 C -0.225 4.225 17 C 0.057 3.943 18 N -0.520 5.520 19 H 0.430 0.570 20 C -0.065 4.065 21 C 0.496 3.504 22 O -0.470 6.470 23 O -0.373 6.373 24 C 0.065 3.935 25 C -0.134 4.134 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.037 0.963 29 H 0.075 0.925 30 H 0.050 0.950 31 H 0.015 0.985 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.033 0.967 35 H 0.251 0.749 36 H 0.045 0.955 37 H 0.062 0.938 38 H 0.160 0.840 39 H 0.222 0.778 40 H 0.040 0.960 41 H 0.055 0.945 42 H 0.096 0.904 43 H 0.078 0.922 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.945 1.039 -12.564 18.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.154 4.154 3 C -0.160 4.160 4 C 0.023 3.977 5 N -0.326 5.326 6 C -0.376 4.376 7 H 0.034 0.966 8 C -0.163 4.163 9 N -0.585 5.585 10 Si 0.776 3.224 11 H -0.218 1.218 12 H -0.250 1.250 13 H -0.181 1.181 14 C 0.054 3.946 15 C -0.093 4.093 16 C -0.250 4.250 17 C -0.081 4.081 18 N -0.117 5.117 19 H 0.270 0.730 20 C -0.176 4.176 21 C 0.340 3.660 22 O -0.354 6.354 23 O -0.292 6.292 24 C -0.009 4.009 25 C -0.190 4.190 26 H 0.078 0.922 27 H 0.086 0.914 28 H 0.056 0.944 29 H 0.094 0.906 30 H 0.069 0.931 31 H 0.034 0.966 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.052 0.948 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.081 0.919 38 H 0.178 0.822 39 H 0.238 0.762 40 H 0.059 0.941 41 H 0.073 0.927 42 H 0.114 0.886 43 H 0.097 0.903 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.546 1.215 -12.204 17.545 hybrid contribution 0.916 0.843 0.549 1.360 sum -11.630 2.058 -11.655 16.593 Atomic orbital electron populations 1.21711 0.95206 1.01869 1.01324 1.21451 0.96371 0.95708 1.01902 1.21965 0.97431 0.96657 0.99936 1.21047 0.92984 0.84378 0.99251 1.44085 1.77743 1.09941 1.00837 1.18065 1.00564 1.30693 0.88314 0.96581 1.25644 0.98448 0.96269 0.95897 1.69879 1.28238 1.32123 1.28305 0.85917 0.78657 0.78143 0.79688 1.21850 1.24999 1.18090 1.19873 0.92260 0.93868 0.88581 1.20990 0.99232 0.92728 0.96344 1.20967 0.97046 1.03967 1.02974 1.22580 1.01423 0.88443 0.95638 1.41779 1.18664 1.22825 1.28413 0.73014 1.19070 0.94944 1.01338 1.02266 1.20451 0.84250 0.79423 0.81908 1.91147 1.21375 1.68355 1.54519 1.86436 1.50000 1.39986 1.52757 1.23008 0.97749 0.92383 0.87783 1.21754 0.98932 0.95324 1.03038 0.92232 0.91444 0.94371 0.90621 0.93143 0.96597 0.91850 0.91859 0.94818 0.94023 0.93758 0.91933 0.82230 0.76189 0.94123 0.92668 0.88568 0.90272 0.91334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.35 9.91 71.98 0.71 -2.64 16 2 C -0.12 -3.20 5.93 30.59 0.18 -3.02 16 3 C -0.12 -4.35 5.51 30.59 0.17 -4.18 16 4 C 0.15 6.08 5.71 86.38 0.49 6.57 16 5 N -0.60 -30.13 2.03 -706.31 -1.44 -31.56 16 6 C -0.25 -14.92 8.92 84.03 0.75 -14.17 16 7 H 0.02 1.13 8.06 -2.91 -0.02 1.11 16 8 C 0.04 2.19 3.23 84.86 0.27 2.46 16 9 N -0.94 -62.41 13.85 21.65 0.30 -62.11 16 10 Si 0.94 51.84 24.10 68.60 1.65 53.49 16 11 H -0.29 -16.07 6.70 99.48 0.67 -15.40 16 12 H -0.32 -17.76 7.11 99.48 0.71 -17.05 16 13 H -0.26 -13.09 7.04 99.48 0.70 -12.39 16 14 C 0.18 8.26 4.03 85.64 0.35 8.61 16 15 C -0.08 -3.23 5.51 -19.54 -0.11 -3.34 16 16 C -0.23 -6.34 9.69 22.01 0.21 -6.13 16 17 C 0.06 1.22 11.87 83.58 0.99 2.21 16 18 N -0.52 -13.92 6.07 -184.04 -1.12 -15.04 16 19 H 0.43 8.83 8.96 -92.71 -0.83 8.00 16 20 C -0.07 -2.58 7.10 40.32 0.29 -2.29 16 21 C 0.50 22.92 7.93 69.97 0.55 23.47 16 22 O -0.47 -26.05 10.39 19.44 0.20 -25.85 16 23 O -0.37 -14.60 10.23 -58.06 -0.59 -15.19 16 24 C 0.06 2.35 6.20 71.98 0.45 2.80 16 25 C -0.13 -3.20 10.29 71.98 0.74 -2.46 16 26 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.06 2.20 6.73 -2.39 -0.02 2.19 16 33 H 0.06 2.22 7.90 -2.39 -0.02 2.21 16 34 H 0.03 1.46 8.09 -2.38 -0.02 1.44 16 35 H 0.25 16.14 8.31 -92.71 -0.77 15.37 16 36 H 0.04 2.35 2.39 -2.39 -0.01 2.34 16 37 H 0.06 2.55 7.96 -2.38 -0.02 2.53 16 38 H 0.16 3.69 8.06 -2.92 -0.02 3.66 16 39 H 0.22 2.19 8.06 -2.91 -0.02 2.17 16 40 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 42 H 0.10 1.92 8.14 -2.38 -0.02 1.90 16 43 H 0.08 1.60 8.14 -2.39 -0.02 1.59 16 44 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -81.24 353.43 5.17 -76.08 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: 0.11 Total: 12.30 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: 6.05 Total: 7.89 kcal Atomic # 7 Polarization: -106.46 SS G_CDS: -2.25 Total: -108.71 kcal Atomic # 8 Polarization: -40.65 SS G_CDS: -0.39 Total: -41.04 kcal Atomic # 14 Polarization: 51.84 SS G_CDS: 1.65 Total: 53.49 kcal Total: -81.24 5.17 -76.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144336904.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.454 kcal (2) G-P(sol) polarization free energy of solvation -81.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds