Wall clock time and date at job start Tue Mar 31 2020 07:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.52999 * 109.46577 * 207.63342 * 3 2 1 5 5 C 1.53006 * 109.46837 * 180.02562 * 4 3 2 6 6 C 1.50693 * 109.47073 * 180.02562 * 5 4 3 7 7 O 1.21284 * 120.00430 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99963 * 180.27227 * 6 5 4 9 9 C 1.46501 * 120.00065 * 179.72312 * 8 6 5 10 10 C 1.53004 * 109.46914 * 180.02562 * 9 8 6 11 11 H 1.09001 * 109.40960 * 305.00277 * 10 9 8 12 12 C 1.54303 * 109.40344 * 185.16173 * 10 9 8 13 13 N 1.48177 * 110.69453 * 200.49331 * 12 10 9 14 14 C 1.36934 * 118.51166 * 138.77220 * 13 12 10 15 15 H 1.07999 * 120.00643 * 319.23333 * 14 13 12 16 16 C 1.38812 * 119.99736 * 139.23359 * 14 13 12 17 17 N 1.31626 * 120.00047 * 156.53775 * 16 14 13 18 18 Si 1.86803 * 120.00240 * 336.54256 * 16 14 13 19 19 H 1.48495 * 109.47576 * 95.51793 * 18 16 14 20 20 H 1.48499 * 109.47116 * 215.52324 * 18 16 14 21 21 H 1.48506 * 109.46617 * 335.51894 * 18 16 14 22 22 C 1.44460 * 122.97147 * 318.80104 * 13 12 10 23 23 C 1.54871 * 109.33038 * 88.91283 * 22 13 12 24 24 C 1.47686 * 109.67836 * 290.09848 * 23 22 13 25 25 O 1.40527 * 109.40431 * 64.84264 * 10 9 8 26 26 H 4.44639 * 5.63321 * 179.97438 * 4 1 2 27 27 H 1.09000 * 109.46786 * 87.63476 * 3 2 1 28 28 H 1.08994 * 109.46863 * 327.63220 * 3 2 1 29 29 H 1.09000 * 109.47453 * 60.00542 * 4 3 2 30 30 H 1.09002 * 109.47708 * 299.99780 * 4 3 2 31 31 H 1.09000 * 109.46778 * 59.99979 * 5 4 3 32 32 H 1.09002 * 109.46669 * 300.00266 * 5 4 3 33 33 H 0.97005 * 120.00054 * 359.73080 * 8 6 5 34 34 H 1.08997 * 109.47483 * 300.00430 * 9 8 6 35 35 H 1.09001 * 109.47099 * 60.00517 * 9 8 6 36 36 H 1.09002 * 109.23184 * 320.80746 * 12 10 9 37 37 H 1.08996 * 109.22523 * 80.22487 * 12 10 9 38 38 H 0.96996 * 119.99661 * 180.02562 * 17 16 14 39 39 H 1.09008 * 109.49316 * 208.86972 * 22 13 12 40 40 H 1.08997 * 109.49407 * 328.95375 * 22 13 12 41 41 H 1.08997 * 109.43796 * 50.16226 * 23 22 13 42 42 H 1.09002 * 109.43789 * 170.03585 * 23 22 13 43 43 H 1.09004 * 108.64728 * 181.88180 * 24 23 22 44 44 H 1.09003 * 108.64580 * 299.72000 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1553 1.2789 0.6691 5 6 4.6854 1.2799 0.6685 6 6 5.1870 2.5386 1.3281 7 8 4.3986 3.3543 1.7568 8 7 6.5120 2.7602 1.4370 9 6 6.9997 3.9866 2.0728 10 6 8.5297 3.9905 2.0668 11 1 8.8961 3.0795 2.5401 12 6 9.0423 5.2171 2.8501 13 7 10.4387 5.5351 2.4698 14 6 10.7886 6.8489 2.3062 15 1 10.1119 7.5305 1.8124 16 6 12.0131 7.3045 2.7751 17 7 12.5600 8.3803 2.2498 18 14 12.8848 6.3908 4.1517 19 1 13.8718 5.4454 3.5710 20 1 13.5871 7.3649 5.0253 21 1 11.8884 5.6358 4.9532 22 6 11.4475 4.5219 2.2631 23 6 11.4198 4.0652 0.7835 24 6 10.1854 3.2976 0.5229 25 8 8.9912 4.0457 0.7406 26 1 -1.0502 -0.0003 -0.0004 27 1 3.0093 -0.0416 -1.0268 28 1 3.0097 -0.8671 0.5501 29 1 2.7920 1.3211 1.6959 30 1 2.7916 2.1468 0.1189 31 1 5.0483 1.2379 -0.3584 32 1 5.0494 0.4120 1.2184 33 1 7.1427 2.1076 1.0944 34 1 6.6324 4.8524 1.5218 35 1 6.6400 4.0308 3.1008 36 1 8.4063 6.0747 2.6307 37 1 9.0015 5.0036 3.9182 38 1 13.4158 8.6984 2.5773 39 1 12.4293 4.9327 2.4988 40 1 11.2445 3.6691 2.9109 41 1 11.4472 4.9397 0.1334 42 1 12.2872 3.4367 0.5816 43 1 10.1991 2.9564 -0.5123 44 1 10.1742 2.4239 1.1746 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001149640968.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:16 Heat of formation + Delta-G solvation = -13.275988 kcal Electronic energy + Delta-G solvation = -23528.211121 eV Core-core repulsion = 20061.742080 eV Total energy + Delta-G solvation = -3466.469040 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.92446 -38.94544 -35.98094 -35.40629 -34.71367 -32.72414 -32.30151 -31.70063 -29.39558 -28.05979 -25.97014 -25.23661 -22.99120 -22.03796 -21.24996 -20.49086 -19.85000 -18.50518 -17.10897 -16.64939 -16.56884 -16.26078 -16.10209 -15.57140 -14.90026 -14.68859 -14.49546 -14.18690 -13.73591 -13.60906 -13.26077 -13.12018 -12.80623 -12.61779 -12.47564 -12.31711 -12.02002 -11.83774 -11.74546 -11.27092 -11.11768 -10.95444 -10.55791 -10.51502 -10.38355 -10.36691 -10.15735 -9.97590 -9.80755 -9.64963 -9.06843 -9.02626 -8.51130 -6.78416 -6.01433 -3.44052 2.50991 2.56187 2.61387 3.15745 3.27782 3.44062 3.49129 4.05558 4.07244 4.49965 4.54569 4.70091 4.78089 4.79256 5.13875 5.16327 5.20790 5.23015 5.28560 5.30648 5.31887 5.44770 5.50064 5.71977 5.73985 5.75145 5.82615 5.84151 5.99959 6.02562 6.08010 6.21425 6.36357 6.40977 6.51401 6.63701 6.71587 6.98456 7.34162 7.46361 7.73277 8.08516 8.19585 8.40196 9.02115 9.70231 10.06806 11.13989 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.038439 B = 0.002650 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.258250 B =10565.250794 C =10845.333583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.185 4.185 3 C -0.014 4.014 4 C -0.100 4.100 5 C -0.141 4.141 6 C 0.509 3.491 7 O -0.543 6.543 8 N -0.723 5.723 9 C 0.122 3.878 10 C 0.065 3.935 11 H 0.055 0.945 12 C 0.130 3.870 13 N -0.597 5.597 14 C -0.270 4.270 15 H 0.076 0.924 16 C 0.038 3.962 17 N -0.896 5.896 18 Si 0.875 3.125 19 H -0.287 1.287 20 H -0.300 1.300 21 H -0.271 1.271 22 C 0.146 3.854 23 C -0.180 4.180 24 C 0.079 3.921 25 O -0.356 6.356 26 H 0.216 0.784 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.400 0.600 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.029 0.971 38 H 0.263 0.737 39 H 0.058 0.942 40 H 0.030 0.970 41 H 0.081 0.919 42 H 0.060 0.940 43 H 0.071 0.929 44 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.624 -19.613 -3.758 24.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.185 4.185 3 C -0.051 4.051 4 C -0.138 4.138 5 C -0.181 4.181 6 C 0.296 3.704 7 O -0.421 6.421 8 N -0.375 5.375 9 C -0.002 4.002 10 C 0.005 3.995 11 H 0.073 0.927 12 C 0.004 3.996 13 N -0.319 5.319 14 C -0.399 4.399 15 H 0.094 0.906 16 C -0.163 4.163 17 N -0.537 5.537 18 Si 0.705 3.295 19 H -0.214 1.214 20 H -0.228 1.228 21 H -0.195 1.195 22 C 0.019 3.981 23 C -0.220 4.220 24 C 0.002 3.998 25 O -0.274 6.274 26 H 0.233 0.767 27 H 0.106 0.894 28 H 0.105 0.895 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.114 0.886 32 H 0.112 0.888 33 H 0.234 0.766 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.047 0.953 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.048 0.952 41 H 0.099 0.901 42 H 0.078 0.922 43 H 0.089 0.911 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -14.150 -18.777 -3.567 23.781 hybrid contribution 1.064 -0.850 0.758 1.559 sum -13.086 -19.627 -2.808 23.756 Atomic orbital electron populations 1.24922 0.96026 1.00851 1.01188 1.23116 0.94602 1.00445 1.00339 1.18779 0.84869 0.99154 1.02261 1.21279 0.93011 0.97071 1.02396 1.21674 0.97366 0.96544 1.02508 1.20636 0.82201 0.88250 0.79359 1.90720 1.55247 1.47282 1.48802 1.45971 1.06971 1.23255 1.61270 1.21565 0.92777 0.87380 0.98488 1.22794 0.92027 0.99573 0.85104 0.92739 1.21880 0.87310 0.95583 0.94828 1.43785 1.04852 1.03303 1.79991 1.18794 1.03506 0.85015 1.32575 0.90646 1.25533 0.97559 0.95570 0.97640 1.69898 1.17368 1.25609 1.40834 0.86955 0.79244 0.78891 0.84427 1.21450 1.22773 1.19543 1.21085 0.93637 0.90998 0.92337 1.22169 0.96383 1.01307 1.02136 1.21372 0.86017 0.92382 1.00018 1.87474 1.40421 1.73304 1.26208 0.76715 0.89427 0.89494 0.90719 0.90649 0.88581 0.88754 0.76622 0.90322 0.90261 0.91361 0.95297 0.92716 0.92427 0.95211 0.90070 0.92163 0.91076 0.94714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.77 19.25 29.55 0.57 -1.20 16 2 C -0.18 -1.67 13.34 -37.12 -0.50 -2.17 16 3 C -0.01 -0.09 5.70 -29.52 -0.17 -0.26 16 4 C -0.10 -0.84 4.46 -26.73 -0.12 -0.96 16 5 C -0.14 -1.03 5.70 -27.88 -0.16 -1.19 16 6 C 0.51 6.03 7.83 -10.99 -0.09 5.95 16 7 O -0.54 -8.79 15.98 5.55 0.09 -8.70 16 8 N -0.72 -8.16 5.49 -60.29 -0.33 -8.49 16 9 C 0.12 1.68 5.24 -4.04 -0.02 1.66 16 10 C 0.07 1.00 2.35 -26.05 -0.06 0.94 16 11 H 0.05 0.75 7.20 -51.93 -0.37 0.38 16 12 C 0.13 2.51 6.12 -2.44 -0.01 2.50 16 13 N -0.60 -13.86 2.11 -171.48 -0.36 -14.22 16 14 C -0.27 -7.49 9.67 -15.06 -0.15 -7.64 16 15 H 0.08 2.30 8.06 -52.49 -0.42 1.87 16 16 C 0.04 1.08 5.20 -17.43 -0.09 0.99 16 17 N -0.90 -27.17 13.97 55.49 0.78 -26.39 16 18 Si 0.88 21.85 25.27 -169.99 -4.30 17.56 16 19 H -0.29 -6.91 6.71 56.52 0.38 -6.53 16 20 H -0.30 -7.62 7.11 56.52 0.40 -7.22 16 21 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 22 C 0.15 3.06 4.47 -4.14 -0.02 3.04 16 23 C -0.18 -3.23 6.03 -28.31 -0.17 -3.40 16 24 C 0.08 1.17 6.04 34.59 0.21 1.38 16 25 O -0.36 -5.99 9.77 -34.10 -0.33 -6.32 16 26 H 0.22 1.07 7.80 -54.08 -0.42 0.65 16 27 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 30 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 31 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.40 3.56 8.46 -40.82 -0.35 3.21 16 34 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.07 1.37 7.75 -51.93 -0.40 0.97 16 37 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 39 H 0.06 1.34 3.66 -51.92 -0.19 1.15 16 40 H 0.03 0.56 8.10 -51.93 -0.42 0.13 16 41 H 0.08 1.72 8.14 -51.93 -0.42 1.29 16 42 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 43 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 44 H 0.03 0.44 7.27 -51.93 -0.38 0.06 16 LS Contribution 359.16 15.07 5.41 5.41 Total: -1.00 -34.13 359.16 -7.00 -41.13 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -7.18 Total: 0.39 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: -0.77 Total: -0.36 kcal Atomic # 7 Polarization: -49.18 SS G_CDS: 0.08 Total: -49.10 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: -0.24 Total: -15.03 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.30 Total: 17.56 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.13 -7.00 -41.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149640968.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.851 kcal (2) G-P(sol) polarization free energy of solvation -34.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds