Wall clock time and date at job start Tue Mar 31 2020 07:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.52999 * 109.46577 * 207.63342 * 3 2 1 5 5 C 1.53006 * 109.46837 * 180.02562 * 4 3 2 6 6 C 1.50693 * 109.47073 * 180.02562 * 5 4 3 7 7 O 1.21284 * 120.00430 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99963 * 180.27227 * 6 5 4 9 9 C 1.46501 * 120.00065 * 179.72312 * 8 6 5 10 10 C 1.53004 * 109.46914 * 180.02562 * 9 8 6 11 11 H 1.09001 * 109.40960 * 305.00277 * 10 9 8 12 12 C 1.54303 * 109.40344 * 185.16173 * 10 9 8 13 13 N 1.48177 * 110.69453 * 200.49331 * 12 10 9 14 14 C 1.36934 * 118.51166 * 138.77220 * 13 12 10 15 15 H 1.07999 * 120.00643 * 319.23333 * 14 13 12 16 16 C 1.38812 * 119.99736 * 139.23359 * 14 13 12 17 17 N 1.31626 * 120.00047 * 156.53775 * 16 14 13 18 18 Si 1.86803 * 120.00240 * 336.54256 * 16 14 13 19 19 H 1.48495 * 109.47576 * 95.51793 * 18 16 14 20 20 H 1.48499 * 109.47116 * 215.52324 * 18 16 14 21 21 H 1.48506 * 109.46617 * 335.51894 * 18 16 14 22 22 C 1.44460 * 122.97147 * 318.80104 * 13 12 10 23 23 C 1.54871 * 109.33038 * 88.91283 * 22 13 12 24 24 C 1.47686 * 109.67836 * 290.09848 * 23 22 13 25 25 O 1.40527 * 109.40431 * 64.84264 * 10 9 8 26 26 H 4.44639 * 5.63321 * 179.97438 * 4 1 2 27 27 H 1.09000 * 109.46786 * 87.63476 * 3 2 1 28 28 H 1.08994 * 109.46863 * 327.63220 * 3 2 1 29 29 H 1.09000 * 109.47453 * 60.00542 * 4 3 2 30 30 H 1.09002 * 109.47708 * 299.99780 * 4 3 2 31 31 H 1.09000 * 109.46778 * 59.99979 * 5 4 3 32 32 H 1.09002 * 109.46669 * 300.00266 * 5 4 3 33 33 H 0.97005 * 120.00054 * 359.73080 * 8 6 5 34 34 H 1.08997 * 109.47483 * 300.00430 * 9 8 6 35 35 H 1.09001 * 109.47099 * 60.00517 * 9 8 6 36 36 H 1.09002 * 109.23184 * 320.80746 * 12 10 9 37 37 H 1.08996 * 109.22523 * 80.22487 * 12 10 9 38 38 H 0.96996 * 119.99661 * 180.02562 * 17 16 14 39 39 H 1.09008 * 109.49316 * 208.86972 * 22 13 12 40 40 H 1.08997 * 109.49407 * 328.95375 * 22 13 12 41 41 H 1.08997 * 109.43796 * 50.16226 * 23 22 13 42 42 H 1.09002 * 109.43789 * 170.03585 * 23 22 13 43 43 H 1.09004 * 108.64728 * 181.88180 * 24 23 22 44 44 H 1.09003 * 108.64580 * 299.72000 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1553 1.2789 0.6691 5 6 4.6854 1.2799 0.6685 6 6 5.1870 2.5386 1.3281 7 8 4.3986 3.3543 1.7568 8 7 6.5120 2.7602 1.4370 9 6 6.9997 3.9866 2.0728 10 6 8.5297 3.9905 2.0668 11 1 8.8961 3.0795 2.5401 12 6 9.0423 5.2171 2.8501 13 7 10.4387 5.5351 2.4698 14 6 10.7886 6.8489 2.3062 15 1 10.1119 7.5305 1.8124 16 6 12.0131 7.3045 2.7751 17 7 12.5600 8.3803 2.2498 18 14 12.8848 6.3908 4.1517 19 1 13.8718 5.4454 3.5710 20 1 13.5871 7.3649 5.0253 21 1 11.8884 5.6358 4.9532 22 6 11.4475 4.5219 2.2631 23 6 11.4198 4.0652 0.7835 24 6 10.1854 3.2976 0.5229 25 8 8.9912 4.0457 0.7406 26 1 -1.0502 -0.0003 -0.0004 27 1 3.0093 -0.0416 -1.0268 28 1 3.0097 -0.8671 0.5501 29 1 2.7920 1.3211 1.6959 30 1 2.7916 2.1468 0.1189 31 1 5.0483 1.2379 -0.3584 32 1 5.0494 0.4120 1.2184 33 1 7.1427 2.1076 1.0944 34 1 6.6324 4.8524 1.5218 35 1 6.6400 4.0308 3.1008 36 1 8.4063 6.0747 2.6307 37 1 9.0015 5.0036 3.9182 38 1 13.4158 8.6984 2.5773 39 1 12.4293 4.9327 2.4988 40 1 11.2445 3.6691 2.9109 41 1 11.4472 4.9397 0.1334 42 1 12.2872 3.4367 0.5816 43 1 10.1991 2.9564 -0.5123 44 1 10.1742 2.4239 1.1746 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001149640968.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:15 Heat of formation + Delta-G solvation = -37.637959 kcal Electronic energy + Delta-G solvation = -23529.267535 eV Core-core repulsion = 20061.742080 eV Total energy + Delta-G solvation = -3467.525454 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.98403 -40.18719 -37.12673 -36.54561 -35.86021 -33.88694 -33.72143 -33.12415 -30.69614 -28.95179 -27.33580 -26.85275 -24.31024 -23.01155 -22.54132 -21.84637 -21.00891 -19.12270 -18.68496 -18.02261 -17.79231 -17.46460 -17.12509 -16.84063 -16.10488 -15.97688 -15.52012 -15.18713 -15.14438 -14.94733 -14.53374 -14.27186 -14.10860 -13.98627 -13.63150 -13.52588 -13.37960 -13.11914 -12.76991 -12.66511 -12.45017 -12.28336 -11.89869 -11.88586 -11.81749 -11.51265 -11.37209 -11.15987 -10.94496 -10.90679 -10.62455 -10.36464 -10.07157 -8.68558 -8.21350 -5.60846 1.29369 1.40815 1.52329 1.71621 1.86553 1.94753 2.26255 2.41006 2.87579 3.04394 3.31847 3.55346 3.80728 4.00821 4.05028 4.11866 4.13042 4.16462 4.22673 4.34005 4.53405 4.56043 4.59510 4.62442 4.72961 4.73599 4.76421 4.83791 4.84800 5.01824 5.02041 5.12731 5.18456 5.23685 5.23756 5.35007 5.47651 5.48372 5.96372 6.17023 6.53471 6.62233 6.74365 7.04616 7.33003 7.65733 8.00510 8.98773 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.038439 B = 0.002650 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.258250 B =10565.250794 C =10845.333583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.216 4.216 3 C -0.010 4.010 4 C -0.096 4.096 5 C -0.128 4.128 6 C 0.504 3.496 7 O -0.595 6.595 8 N -0.712 5.712 9 C 0.131 3.869 10 C 0.081 3.919 11 H 0.088 0.912 12 C 0.121 3.879 13 N -0.608 5.608 14 C -0.262 4.262 15 H 0.025 0.975 16 C -0.021 4.021 17 N -0.949 5.949 18 Si 0.949 3.051 19 H -0.269 1.269 20 H -0.308 1.308 21 H -0.258 1.258 22 C 0.135 3.865 23 C -0.172 4.172 24 C 0.072 3.928 25 O -0.377 6.377 26 H 0.238 0.762 27 H 0.106 0.894 28 H 0.109 0.891 29 H 0.054 0.946 30 H 0.049 0.951 31 H 0.124 0.876 32 H 0.130 0.870 33 H 0.416 0.584 34 H 0.049 0.951 35 H 0.082 0.918 36 H 0.043 0.957 37 H 0.043 0.957 38 H 0.263 0.737 39 H 0.032 0.968 40 H 0.066 0.934 41 H 0.034 0.966 42 H 0.091 0.909 43 H 0.096 0.904 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.351 -24.241 -3.489 27.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.216 4.216 3 C -0.046 4.046 4 C -0.134 4.134 5 C -0.168 4.168 6 C 0.292 3.708 7 O -0.476 6.476 8 N -0.364 5.364 9 C 0.006 3.994 10 C 0.021 3.979 11 H 0.106 0.894 12 C -0.004 4.004 13 N -0.332 5.332 14 C -0.392 4.392 15 H 0.043 0.957 16 C -0.217 4.217 17 N -0.592 5.592 18 Si 0.777 3.223 19 H -0.196 1.196 20 H -0.237 1.237 21 H -0.182 1.182 22 C 0.009 3.991 23 C -0.212 4.212 24 C -0.004 4.004 25 O -0.295 6.295 26 H 0.255 0.745 27 H 0.124 0.876 28 H 0.127 0.873 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.142 0.858 32 H 0.148 0.852 33 H 0.253 0.747 34 H 0.067 0.933 35 H 0.100 0.900 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.072 0.928 39 H 0.050 0.950 40 H 0.084 0.916 41 H 0.053 0.947 42 H 0.110 0.890 43 H 0.114 0.886 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -13.875 -23.479 -3.317 27.474 hybrid contribution 0.891 0.644 0.598 1.251 sum -12.984 -22.836 -2.719 26.409 Atomic orbital electron populations 1.25710 0.97145 1.00380 1.00860 1.23890 0.95934 1.00958 1.00796 1.18863 0.83612 0.98717 1.03433 1.21183 0.94076 0.97166 1.00966 1.21702 0.96098 0.94985 1.03990 1.21505 0.81721 0.89080 0.78473 1.90707 1.56492 1.49371 1.51062 1.45821 1.07328 1.22460 1.60760 1.21262 0.91926 0.87768 0.98488 1.22600 0.92476 0.98462 0.84355 0.89395 1.22047 0.84990 0.96952 0.96412 1.43882 1.06778 1.01971 1.80561 1.18601 1.02533 0.86852 1.31209 0.95717 1.26196 0.98758 0.96900 0.99886 1.70041 1.18266 1.28262 1.42660 0.85761 0.78392 0.77607 0.80552 1.19575 1.23690 1.18218 1.21260 0.91615 0.91186 0.95030 1.22100 0.99804 1.00479 0.98863 1.21548 0.83627 0.92563 1.02623 1.87487 1.41239 1.74097 1.26717 0.74548 0.87602 0.87279 0.92757 0.93238 0.85843 0.85199 0.74670 0.93268 0.89973 0.93829 0.93892 0.92807 0.94987 0.91615 0.94679 0.89044 0.88553 0.90730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.51 19.25 74.32 1.43 -2.08 16 2 C -0.22 -3.64 13.34 31.13 0.42 -3.23 16 3 C -0.01 -0.11 5.70 28.79 0.16 0.05 16 4 C -0.10 -1.48 4.46 30.60 0.14 -1.34 16 5 C -0.13 -1.44 5.70 29.85 0.17 -1.27 16 6 C 0.50 10.99 7.83 87.65 0.69 11.68 16 7 O -0.60 -19.37 15.98 -3.04 -0.05 -19.42 16 8 N -0.71 -14.04 5.49 -463.06 -2.54 -16.59 16 9 C 0.13 3.44 5.24 86.38 0.45 3.89 16 10 C 0.08 2.27 2.35 31.04 0.07 2.35 16 11 H 0.09 1.93 7.20 -2.39 -0.02 1.92 16 12 C 0.12 4.61 6.12 86.50 0.53 5.14 16 13 N -0.61 -28.06 2.11 -696.45 -1.47 -29.53 16 14 C -0.26 -15.11 9.67 84.03 0.81 -14.30 16 15 H 0.03 1.65 8.06 -2.91 -0.02 1.62 16 16 C -0.02 -1.23 5.20 84.86 0.44 -0.79 16 17 N -0.95 -59.98 13.97 21.65 0.30 -59.68 16 18 Si 0.95 45.62 25.27 68.60 1.73 47.36 16 19 H -0.27 -12.07 6.71 99.48 0.67 -11.40 16 20 H -0.31 -15.11 7.11 99.48 0.71 -14.40 16 21 H -0.26 -11.74 7.11 99.48 0.71 -11.04 16 22 C 0.13 5.31 4.47 87.40 0.39 5.70 16 23 C -0.17 -5.75 6.03 29.57 0.18 -5.57 16 24 C 0.07 1.84 6.04 70.32 0.42 2.27 16 25 O -0.38 -11.77 9.77 -144.93 -1.42 -13.18 16 26 H 0.24 2.09 7.80 -4.41 -0.03 2.05 16 27 H 0.11 0.77 8.14 -2.39 -0.02 0.76 16 28 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.05 1.04 8.10 -2.39 -0.02 1.02 16 30 H 0.05 1.00 8.10 -2.39 -0.02 0.98 16 31 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.13 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.42 5.48 8.46 -92.70 -0.78 4.70 16 34 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.04 1.83 7.75 -2.39 -0.02 1.81 16 37 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 39 H 0.03 1.42 3.66 -2.38 -0.01 1.42 16 40 H 0.07 2.13 8.10 -2.39 -0.02 2.11 16 41 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 43 H 0.10 2.02 8.14 -2.38 -0.02 2.00 16 44 H 0.07 1.37 7.27 -2.39 -0.02 1.35 16 Total: -1.00 -80.61 359.16 3.02 -77.59 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: 0.15 Total: 10.96 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: 6.31 Total: 2.49 kcal Atomic # 7 Polarization: -102.08 SS G_CDS: -3.71 Total: -105.79 kcal Atomic # 8 Polarization: -31.14 SS G_CDS: -1.46 Total: -32.60 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 1.73 Total: 47.36 kcal Total: -80.61 3.02 -77.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149640968.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.954 kcal (2) G-P(sol) polarization free energy of solvation -80.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds