Wall clock time and date at job start Tue Mar 31 2020 07:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.53006 * 109.46880 * 147.46495 * 3 2 1 5 5 C 1.52994 * 109.46981 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47152 * 179.97438 * 5 4 3 7 7 O 1.21287 * 119.99969 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00516 * 180.02562 * 6 5 4 9 9 C 1.46503 * 120.00415 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.46906 * 180.02562 * 9 8 6 11 11 H 1.08995 * 108.57341 * 57.94520 * 10 9 8 12 12 C 1.46926 * 108.61733 * 175.75627 * 10 9 8 13 13 N 1.50111 * 106.77864 * 177.91860 * 12 10 9 14 14 C 1.36927 * 120.63634 * 111.32416 * 13 12 10 15 15 H 1.08006 * 120.00309 * 155.70448 * 14 13 12 16 16 C 1.38818 * 120.00364 * 335.70225 * 14 13 12 17 17 N 1.31615 * 119.99608 * 340.68472 * 16 14 13 18 18 Si 1.86793 * 120.00296 * 160.68215 * 16 14 13 19 19 H 1.48505 * 109.47395 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47201 * 120.00218 * 18 16 14 21 21 H 1.48501 * 109.47273 * 240.00173 * 18 16 14 22 22 C 1.43424 * 118.72807 * 291.34678 * 13 12 10 23 23 C 1.55325 * 116.23997 * 89.35485 * 22 13 12 24 24 C 1.55189 * 108.87409 * 319.46406 * 23 22 13 25 25 O 1.39640 * 110.56951 * 322.14176 * 24 23 22 26 26 H 4.44651 * 5.63429 * 180.02562 * 4 1 2 27 27 H 1.08995 * 109.47721 * 27.46108 * 3 2 1 28 28 H 1.09008 * 109.47025 * 267.45787 * 3 2 1 29 29 H 1.09005 * 109.46977 * 59.99753 * 4 3 2 30 30 H 1.08996 * 109.46858 * 299.99844 * 4 3 2 31 31 H 1.09005 * 109.47050 * 60.00309 * 5 4 3 32 32 H 1.08996 * 109.47614 * 299.99891 * 5 4 3 33 33 H 0.96999 * 119.99922 * 0.02562 * 8 6 5 34 34 H 1.08998 * 109.46766 * 299.99642 * 9 8 6 35 35 H 1.08996 * 109.46917 * 60.00107 * 9 8 6 36 36 H 1.08996 * 109.99169 * 297.23912 * 12 10 9 37 37 H 1.09006 * 109.98744 * 58.60247 * 12 10 9 38 38 H 0.96996 * 119.99985 * 180.02562 * 17 16 14 39 39 H 1.09002 * 108.12666 * 327.59398 * 22 13 12 40 40 H 1.08998 * 107.96813 * 210.98749 * 22 13 12 41 41 H 1.09000 * 109.57189 * 199.65134 * 23 22 13 42 42 H 1.09000 * 109.57102 * 79.28585 * 23 22 13 43 43 H 1.09005 * 109.25808 * 201.86320 * 24 23 22 44 44 H 1.09001 * 109.25449 * 82.42741 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1554 1.2171 -0.7758 5 6 4.6853 1.2181 -0.7753 6 6 5.1871 2.4158 -1.5400 7 8 4.3986 3.1919 -2.0369 8 7 6.5120 2.6241 -1.6726 9 6 6.9998 3.7888 -2.4155 10 6 8.5298 3.7890 -2.4161 11 1 8.8770 2.8559 -2.8598 12 6 8.9983 4.9045 -3.2498 13 7 10.4978 4.8976 -3.1800 14 6 11.2460 4.5680 -4.2784 15 1 12.2616 4.9248 -4.3670 16 6 10.6993 3.7752 -5.2782 17 7 9.6408 3.0349 -5.0260 18 14 11.4658 3.7593 -6.9816 19 1 12.6371 4.6720 -7.0060 20 1 11.9052 2.3803 -7.3138 21 1 10.4642 4.2135 -7.9794 22 6 11.1318 5.2425 -1.9406 23 6 11.3972 4.0711 -0.9558 24 6 10.1714 3.1194 -0.9655 25 8 8.9850 3.8487 -1.0684 26 1 -1.0502 -0.0002 0.0004 27 1 3.0098 -0.9110 -0.4739 28 1 3.0093 0.0464 1.0267 29 1 2.7916 2.1288 -0.3019 30 1 2.7921 1.1714 -1.8024 31 1 5.0495 0.3064 -1.2491 32 1 5.0483 1.2640 0.2514 33 1 7.1427 2.0029 -1.2762 34 1 6.6364 3.7431 -3.4421 35 1 6.6362 4.7004 -1.9415 36 1 8.6726 4.7620 -4.2802 37 1 8.6115 5.8472 -2.8626 38 1 9.2590 2.4806 -5.7244 39 1 10.5069 5.9773 -1.4330 40 1 12.0868 5.7145 -2.1713 41 1 11.5452 4.4656 0.0495 42 1 12.2864 3.5244 -1.2698 43 1 10.1584 2.5404 -0.0420 44 1 10.2506 2.4399 -1.8141 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001149640969.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:19 Heat of formation + Delta-G solvation = -13.210966 kcal Electronic energy + Delta-G solvation = -23971.144956 eV Core-core repulsion = 20504.678735 eV Total energy + Delta-G solvation = -3466.466221 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.65186 -38.76277 -35.77492 -35.02315 -34.45434 -32.49633 -32.09639 -31.15804 -28.91255 -27.89681 -25.42184 -25.23862 -22.93031 -21.96525 -20.80479 -19.90565 -19.59761 -18.36094 -17.14116 -16.68601 -16.16238 -15.87285 -15.51882 -14.92137 -14.65677 -14.45373 -14.26938 -13.98558 -13.74031 -13.33952 -13.11116 -12.86633 -12.55155 -12.46004 -12.10894 -11.94367 -11.64370 -11.42850 -11.24217 -11.07562 -10.87540 -10.75697 -10.47874 -10.38636 -10.25943 -10.16833 -9.99449 -9.72395 -9.59135 -9.49456 -8.81655 -8.65121 -8.52039 -6.84048 -5.94368 -3.32786 2.63003 2.67282 2.92237 3.31154 3.40618 3.42197 3.53335 4.20239 4.41796 4.67907 4.81909 4.88535 4.98505 5.22702 5.26513 5.34834 5.35804 5.46197 5.52501 5.71647 5.80143 5.86092 5.91268 5.98972 6.02411 6.13628 6.17599 6.31775 6.40058 6.46694 6.57639 6.65298 6.69585 6.80230 6.92223 6.95069 7.10666 7.31254 7.45133 7.70447 7.85149 8.12121 8.30159 8.53154 9.05054 9.73244 10.27561 11.14738 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.020426 B = 0.003249 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.455036 B = 8615.031140 C = 9457.926925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.182 4.182 3 C -0.015 4.015 4 C -0.098 4.098 5 C -0.141 4.141 6 C 0.507 3.493 7 O -0.551 6.551 8 N -0.715 5.715 9 C 0.121 3.879 10 C 0.060 3.940 11 H 0.107 0.893 12 C 0.142 3.858 13 N -0.588 5.588 14 C -0.248 4.248 15 H 0.070 0.930 16 C 0.001 3.999 17 N -0.907 5.907 18 Si 0.904 3.096 19 H -0.279 1.279 20 H -0.291 1.291 21 H -0.289 1.289 22 C 0.160 3.840 23 C -0.172 4.172 24 C 0.067 3.933 25 O -0.370 6.370 26 H 0.216 0.784 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.400 0.600 34 H 0.077 0.923 35 H 0.061 0.939 36 H 0.104 0.896 37 H 0.019 0.981 38 H 0.255 0.745 39 H 0.031 0.969 40 H 0.033 0.967 41 H 0.049 0.951 42 H 0.056 0.944 43 H 0.051 0.949 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.314 -6.099 10.074 14.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.182 4.182 3 C -0.052 4.052 4 C -0.136 4.136 5 C -0.181 4.181 6 C 0.293 3.707 7 O -0.429 6.429 8 N -0.365 5.365 9 C -0.004 4.004 10 C 0.002 3.998 11 H 0.125 0.875 12 C 0.018 3.982 13 N -0.308 5.308 14 C -0.377 4.377 15 H 0.087 0.913 16 C -0.196 4.196 17 N -0.553 5.553 18 Si 0.734 3.266 19 H -0.204 1.204 20 H -0.219 1.219 21 H -0.215 1.215 22 C 0.032 3.968 23 C -0.213 4.213 24 C -0.011 4.011 25 O -0.288 6.288 26 H 0.232 0.768 27 H 0.106 0.894 28 H 0.105 0.895 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.234 0.766 34 H 0.095 0.905 35 H 0.079 0.921 36 H 0.122 0.878 37 H 0.037 0.963 38 H 0.065 0.935 39 H 0.050 0.950 40 H 0.051 0.949 41 H 0.068 0.932 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.012 -5.489 9.713 14.342 hybrid contribution 0.733 -0.628 -0.822 1.268 sum -8.279 -6.116 8.891 13.602 Atomic orbital electron populations 1.24896 0.95995 1.01126 1.01356 1.23156 0.94626 1.00233 1.00165 1.18802 0.84771 0.99732 1.01858 1.21265 0.93247 0.97514 1.01615 1.21667 0.97120 0.97667 1.01683 1.20589 0.82488 0.86984 0.80657 1.90688 1.55376 1.47732 1.49142 1.45966 1.06621 1.28363 1.55566 1.21682 0.94724 0.87582 0.96370 1.22193 0.90449 1.04653 0.82534 0.87535 1.20756 0.83492 0.93257 1.00730 1.44124 1.00998 1.79449 1.06245 1.19307 0.97561 1.24626 0.96200 0.91252 1.24904 0.98659 0.96396 0.99690 1.69869 1.25220 1.27953 1.32250 0.86198 0.78587 0.77238 0.84574 1.20382 1.21856 1.21529 1.20378 0.96065 0.93688 0.86714 1.23583 0.97965 1.00376 0.99420 1.22342 0.85269 0.93475 0.99972 1.87516 1.39054 1.74156 1.28082 0.76757 0.89440 0.89474 0.90795 0.90738 0.88776 0.88820 0.76624 0.90478 0.92101 0.87813 0.96268 0.93532 0.95011 0.94892 0.93188 0.92501 0.93123 0.91925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.07 19.25 29.55 0.57 -1.50 16 2 C -0.18 -1.90 13.34 -37.12 -0.50 -2.40 16 3 C -0.02 -0.13 5.70 -29.52 -0.17 -0.30 16 4 C -0.10 -1.04 4.46 -26.73 -0.12 -1.16 16 5 C -0.14 -1.43 5.70 -27.89 -0.16 -1.59 16 6 C 0.51 7.67 7.83 -10.99 -0.09 7.59 16 7 O -0.55 -10.54 15.98 5.55 0.09 -10.46 16 8 N -0.72 -11.03 5.43 -60.29 -0.33 -11.36 16 9 C 0.12 2.21 5.24 -4.04 -0.02 2.19 16 10 C 0.06 1.21 1.95 -29.64 -0.06 1.15 16 11 H 0.11 2.38 5.23 -51.93 -0.27 2.11 16 12 C 0.14 3.20 4.71 -4.93 -0.02 3.18 16 13 N -0.59 -13.95 2.61 -174.50 -0.46 -14.40 16 14 C -0.25 -6.39 9.61 -15.06 -0.14 -6.53 16 15 H 0.07 1.80 7.87 -52.48 -0.41 1.38 16 16 C 0.00 0.03 4.92 -17.43 -0.09 -0.06 16 17 N -0.91 -23.44 9.56 55.49 0.53 -22.90 16 18 Si 0.90 20.74 29.60 -169.99 -5.03 15.71 16 19 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 C 0.16 3.35 5.33 -4.44 -0.02 3.33 16 23 C -0.17 -3.16 6.75 -24.34 -0.16 -3.32 16 24 C 0.07 1.22 6.38 38.32 0.24 1.47 16 25 O -0.37 -7.07 9.54 -31.94 -0.30 -7.37 16 26 H 0.22 1.31 7.80 -54.08 -0.42 0.89 16 27 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.09 0.60 8.14 -51.92 -0.42 0.18 16 29 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 30 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 31 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.40 5.42 8.33 -40.82 -0.34 5.08 16 34 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 35 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 36 H 0.10 2.56 6.02 -51.93 -0.31 2.25 16 37 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.25 6.49 8.31 -40.82 -0.34 6.15 16 39 H 0.03 0.65 7.99 -51.93 -0.41 0.23 16 40 H 0.03 0.68 7.95 -51.93 -0.41 0.27 16 41 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 43 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.06 1.28 6.66 -51.93 -0.35 0.94 16 LS Contribution 359.00 15.07 5.41 5.41 Total: -1.00 -29.54 359.00 -7.96 -37.50 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -7.14 Total: 5.83 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: -0.74 Total: 2.05 kcal Atomic # 7 Polarization: -48.41 SS G_CDS: -0.25 Total: -48.66 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: -0.22 Total: -17.83 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.03 Total: 15.71 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.54 -7.96 -37.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149640969.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.291 kcal (2) G-P(sol) polarization free energy of solvation -29.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds