Wall clock time and date at job start Tue Mar 31 2020 07:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.53006 * 109.46880 * 147.46495 * 3 2 1 5 5 C 1.52994 * 109.46981 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47152 * 179.97438 * 5 4 3 7 7 O 1.21287 * 119.99969 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00516 * 180.02562 * 6 5 4 9 9 C 1.46503 * 120.00415 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.46906 * 180.02562 * 9 8 6 11 11 H 1.08995 * 108.57341 * 57.94520 * 10 9 8 12 12 C 1.46926 * 108.61733 * 175.75627 * 10 9 8 13 13 N 1.50111 * 106.77864 * 177.91860 * 12 10 9 14 14 C 1.36927 * 120.63634 * 111.32416 * 13 12 10 15 15 H 1.08006 * 120.00309 * 155.70448 * 14 13 12 16 16 C 1.38818 * 120.00364 * 335.70225 * 14 13 12 17 17 N 1.31615 * 119.99608 * 340.68472 * 16 14 13 18 18 Si 1.86793 * 120.00296 * 160.68215 * 16 14 13 19 19 H 1.48505 * 109.47395 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47201 * 120.00218 * 18 16 14 21 21 H 1.48501 * 109.47273 * 240.00173 * 18 16 14 22 22 C 1.43424 * 118.72807 * 291.34678 * 13 12 10 23 23 C 1.55325 * 116.23997 * 89.35485 * 22 13 12 24 24 C 1.55189 * 108.87409 * 319.46406 * 23 22 13 25 25 O 1.39640 * 110.56951 * 322.14176 * 24 23 22 26 26 H 4.44651 * 5.63429 * 180.02562 * 4 1 2 27 27 H 1.08995 * 109.47721 * 27.46108 * 3 2 1 28 28 H 1.09008 * 109.47025 * 267.45787 * 3 2 1 29 29 H 1.09005 * 109.46977 * 59.99753 * 4 3 2 30 30 H 1.08996 * 109.46858 * 299.99844 * 4 3 2 31 31 H 1.09005 * 109.47050 * 60.00309 * 5 4 3 32 32 H 1.08996 * 109.47614 * 299.99891 * 5 4 3 33 33 H 0.96999 * 119.99922 * 0.02562 * 8 6 5 34 34 H 1.08998 * 109.46766 * 299.99642 * 9 8 6 35 35 H 1.08996 * 109.46917 * 60.00107 * 9 8 6 36 36 H 1.08996 * 109.99169 * 297.23912 * 12 10 9 37 37 H 1.09006 * 109.98744 * 58.60247 * 12 10 9 38 38 H 0.96996 * 119.99985 * 180.02562 * 17 16 14 39 39 H 1.09002 * 108.12666 * 327.59398 * 22 13 12 40 40 H 1.08998 * 107.96813 * 210.98749 * 22 13 12 41 41 H 1.09000 * 109.57189 * 199.65134 * 23 22 13 42 42 H 1.09000 * 109.57102 * 79.28585 * 23 22 13 43 43 H 1.09005 * 109.25808 * 201.86320 * 24 23 22 44 44 H 1.09001 * 109.25449 * 82.42741 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1554 1.2171 -0.7758 5 6 4.6853 1.2181 -0.7753 6 6 5.1871 2.4158 -1.5400 7 8 4.3986 3.1919 -2.0369 8 7 6.5120 2.6241 -1.6726 9 6 6.9998 3.7888 -2.4155 10 6 8.5298 3.7890 -2.4161 11 1 8.8770 2.8559 -2.8598 12 6 8.9983 4.9045 -3.2498 13 7 10.4978 4.8976 -3.1800 14 6 11.2460 4.5680 -4.2784 15 1 12.2616 4.9248 -4.3670 16 6 10.6993 3.7752 -5.2782 17 7 9.6408 3.0349 -5.0260 18 14 11.4658 3.7593 -6.9816 19 1 12.6371 4.6720 -7.0060 20 1 11.9052 2.3803 -7.3138 21 1 10.4642 4.2135 -7.9794 22 6 11.1318 5.2425 -1.9406 23 6 11.3972 4.0711 -0.9558 24 6 10.1714 3.1194 -0.9655 25 8 8.9850 3.8487 -1.0684 26 1 -1.0502 -0.0002 0.0004 27 1 3.0098 -0.9110 -0.4739 28 1 3.0093 0.0464 1.0267 29 1 2.7916 2.1288 -0.3019 30 1 2.7921 1.1714 -1.8024 31 1 5.0495 0.3064 -1.2491 32 1 5.0483 1.2640 0.2514 33 1 7.1427 2.0029 -1.2762 34 1 6.6364 3.7431 -3.4421 35 1 6.6362 4.7004 -1.9415 36 1 8.6726 4.7620 -4.2802 37 1 8.6115 5.8472 -2.8626 38 1 9.2590 2.4806 -5.7244 39 1 10.5069 5.9773 -1.4330 40 1 12.0868 5.7145 -2.1713 41 1 11.5452 4.4656 0.0495 42 1 12.2864 3.5244 -1.2698 43 1 10.1584 2.5404 -0.0420 44 1 10.2506 2.4399 -1.8141 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001149640969.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:18 Heat of formation + Delta-G solvation = -31.143683 kcal Electronic energy + Delta-G solvation = -23971.922577 eV Core-core repulsion = 20504.678735 eV Total energy + Delta-G solvation = -3467.243842 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.04611 -40.21764 -36.81852 -36.56006 -35.85121 -33.86460 -33.29702 -32.79829 -30.40500 -28.96292 -27.06063 -26.83571 -24.41409 -23.07966 -22.38521 -21.32292 -21.06208 -19.12637 -18.91269 -17.86055 -17.69653 -17.00124 -16.85825 -16.60331 -16.19803 -15.70481 -15.54063 -15.50490 -14.89511 -14.77214 -14.44660 -14.21697 -14.00628 -13.62846 -13.44399 -13.33000 -13.24646 -12.91975 -12.64070 -12.51512 -12.44390 -12.26382 -11.92528 -11.90747 -11.76042 -11.37175 -11.17688 -11.15397 -10.94571 -10.86010 -10.56065 -10.25432 -10.01690 -8.71577 -7.89715 -5.30031 1.46343 1.51770 1.59046 1.73083 1.87139 1.94949 2.34437 2.52498 3.13176 3.27764 3.51032 3.55687 3.82871 4.11525 4.16225 4.21384 4.29292 4.38693 4.43405 4.53296 4.60657 4.70327 4.73126 4.76475 4.79535 4.81074 4.83731 5.00001 5.09221 5.19307 5.20195 5.22817 5.23368 5.34372 5.35772 5.41749 5.47379 5.54915 5.68855 6.36515 6.53649 6.65459 6.74418 7.10880 7.33618 7.83196 8.36216 9.16307 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.020426 B = 0.003249 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.455036 B = 8615.031140 C = 9457.926925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.216 4.216 3 C -0.010 4.010 4 C -0.093 4.093 5 C -0.129 4.129 6 C 0.501 3.499 7 O -0.597 6.597 8 N -0.709 5.709 9 C 0.132 3.868 10 C 0.081 3.919 11 H 0.086 0.914 12 C 0.143 3.857 13 N -0.602 5.602 14 C -0.262 4.262 15 H 0.063 0.937 16 C -0.037 4.037 17 N -0.917 5.917 18 Si 0.958 3.042 19 H -0.275 1.275 20 H -0.293 1.293 21 H -0.294 1.294 22 C 0.153 3.847 23 C -0.165 4.165 24 C 0.068 3.932 25 O -0.366 6.366 26 H 0.240 0.760 27 H 0.106 0.894 28 H 0.108 0.892 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.122 0.878 32 H 0.126 0.874 33 H 0.412 0.588 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.077 0.923 37 H 0.022 0.978 38 H 0.251 0.749 39 H 0.034 0.966 40 H 0.030 0.970 41 H 0.078 0.922 42 H 0.054 0.946 43 H 0.089 0.911 44 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.116 -7.448 11.859 16.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.216 4.216 3 C -0.046 4.046 4 C -0.132 4.132 5 C -0.168 4.168 6 C 0.290 3.710 7 O -0.478 6.478 8 N -0.360 5.360 9 C 0.007 3.993 10 C 0.022 3.978 11 H 0.104 0.896 12 C 0.018 3.982 13 N -0.323 5.323 14 C -0.391 4.391 15 H 0.081 0.919 16 C -0.233 4.233 17 N -0.562 5.562 18 Si 0.788 3.212 19 H -0.200 1.200 20 H -0.220 1.220 21 H -0.221 1.221 22 C 0.025 3.975 23 C -0.206 4.206 24 C -0.010 4.010 25 O -0.285 6.285 26 H 0.257 0.743 27 H 0.124 0.876 28 H 0.126 0.874 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.140 0.860 32 H 0.144 0.856 33 H 0.248 0.752 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.095 0.905 37 H 0.040 0.960 38 H 0.060 0.940 39 H 0.052 0.948 40 H 0.048 0.952 41 H 0.097 0.903 42 H 0.073 0.927 43 H 0.107 0.893 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -8.790 -6.854 11.535 16.041 hybrid contribution 0.663 -0.146 -1.360 1.520 sum -8.127 -7.000 10.175 14.784 Atomic orbital electron populations 1.25713 0.97088 1.00315 1.00692 1.23839 0.95848 1.01046 1.00912 1.18842 0.83819 0.99147 1.02812 1.21167 0.93657 0.97886 1.00447 1.21700 0.96438 0.95891 1.02773 1.21542 0.81667 0.87774 0.80013 1.90671 1.56357 1.49716 1.51097 1.45878 1.07302 1.27641 1.55201 1.21309 0.93568 0.88721 0.95708 1.21724 0.91151 1.02345 0.82595 0.89606 1.20682 0.83291 0.94361 0.99832 1.44231 1.01325 1.79776 1.06971 1.19427 0.97601 1.24666 0.97450 0.91935 1.25470 0.99380 0.96473 1.02017 1.69990 1.25769 1.28037 1.32440 0.85351 0.77749 0.76873 0.81217 1.20027 1.21980 1.22092 1.20500 0.95731 0.94896 0.86325 1.23498 0.97933 0.99234 0.99959 1.22409 0.84718 0.93124 1.00732 1.87515 1.39507 1.74458 1.26996 0.74342 0.87621 0.87390 0.92764 0.93039 0.85983 0.85596 0.75214 0.92474 0.92780 0.90464 0.95970 0.94000 0.94779 0.95167 0.90322 0.92736 0.89310 0.94485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.95 19.25 74.32 1.43 -2.52 16 2 C -0.22 -4.26 13.34 31.12 0.42 -3.84 16 3 C -0.01 -0.15 5.70 28.79 0.16 0.02 16 4 C -0.09 -1.87 4.46 30.59 0.14 -1.73 16 5 C -0.13 -2.27 5.70 29.85 0.17 -2.10 16 6 C 0.50 14.75 7.83 87.66 0.69 15.44 16 7 O -0.60 -23.22 15.98 -3.05 -0.05 -23.27 16 8 N -0.71 -21.22 5.43 -463.06 -2.52 -23.73 16 9 C 0.13 4.90 5.24 86.38 0.45 5.36 16 10 C 0.08 3.23 1.95 28.71 0.06 3.29 16 11 H 0.09 3.88 5.23 -2.39 -0.01 3.86 16 12 C 0.14 6.55 4.71 83.79 0.39 6.94 16 13 N -0.60 -28.71 2.61 -706.01 -1.84 -30.56 16 14 C -0.26 -13.62 9.61 84.04 0.81 -12.81 16 15 H 0.06 3.27 7.87 -2.91 -0.02 3.25 16 16 C -0.04 -1.92 4.92 84.86 0.42 -1.50 16 17 N -0.92 -48.09 9.56 21.65 0.21 -47.88 16 18 Si 0.96 43.00 29.60 68.60 2.03 45.03 16 19 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 20 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 21 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 22 C 0.15 6.28 5.33 87.75 0.47 6.75 16 23 C -0.17 -5.70 6.75 32.14 0.22 -5.48 16 24 C 0.07 2.32 6.38 72.73 0.46 2.78 16 25 O -0.37 -13.41 9.54 -137.19 -1.31 -14.72 16 26 H 0.24 2.52 7.80 -4.41 -0.03 2.48 16 27 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.11 1.14 8.14 -2.38 -0.02 1.12 16 29 H 0.05 1.28 8.10 -2.38 -0.02 1.26 16 30 H 0.05 1.25 8.10 -2.39 -0.02 1.23 16 31 H 0.12 1.56 8.14 -2.38 -0.02 1.54 16 32 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.41 10.33 8.33 -92.71 -0.77 9.56 16 34 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.08 3.95 6.02 -2.39 -0.01 3.94 16 37 H 0.02 0.98 8.14 -2.38 -0.02 0.96 16 38 H 0.25 12.97 8.31 -92.71 -0.77 12.20 16 39 H 0.03 1.36 7.99 -2.39 -0.02 1.34 16 40 H 0.03 1.23 7.95 -2.39 -0.02 1.21 16 41 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 42 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.09 2.40 8.14 -2.38 -0.02 2.38 16 44 H 0.04 1.47 6.66 -2.39 -0.02 1.46 16 Total: -1.00 -65.10 359.00 3.01 -62.09 By element: Atomic # 1 Polarization: 22.26 SS G_CDS: 0.21 Total: 22.47 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: 6.28 Total: 10.58 kcal Atomic # 7 Polarization: -98.02 SS G_CDS: -4.15 Total: -102.17 kcal Atomic # 8 Polarization: -36.63 SS G_CDS: -1.36 Total: -37.99 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -65.10 3.01 -62.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149640969.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.948 kcal (2) G-P(sol) polarization free energy of solvation -65.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds