Wall clock time and date at job start Tue Mar 31 2020 07:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47308 * 2 1 4 4 C 1.47197 * 109.47287 * 240.00034 * 2 1 3 5 5 C 2.64601 * 109.47091 * 239.99755 * 2 1 3 6 6 C 4.07796 * 109.47080 * 239.99792 * 2 1 3 7 7 O 1.21621 * 120.00284 * 63.48286 * 6 5 4 8 8 N 1.34772 * 120.00076 * 243.48130 * 6 5 4 9 9 C 1.46507 * 120.00191 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.47196 * 179.97438 * 9 8 6 11 11 H 1.08996 * 109.40482 * 305.00389 * 10 9 8 12 12 C 1.54292 * 109.40552 * 185.15892 * 10 9 8 13 13 N 1.48178 * 110.69761 * 200.49099 * 12 10 9 14 14 C 1.36937 * 118.51676 * 138.77322 * 13 12 10 15 15 H 1.07995 * 120.00127 * 206.12870 * 14 13 12 16 16 C 1.38812 * 119.99810 * 26.12472 * 14 13 12 17 17 N 1.31620 * 120.00127 * 15.50752 * 16 14 13 18 18 Si 1.86801 * 120.00111 * 195.51019 * 16 14 13 19 19 H 1.48495 * 109.47118 * 60.00022 * 18 16 14 20 20 H 1.48501 * 109.47015 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46867 * 300.00370 * 18 16 14 22 22 C 1.44465 * 122.97432 * 318.79962 * 13 12 10 23 23 C 1.54878 * 109.32883 * 88.90739 * 22 13 12 24 24 C 1.47691 * 109.67951 * 290.10674 * 23 22 13 25 25 O 1.40528 * 109.40706 * 64.83734 * 10 9 8 26 26 H 1.09003 * 109.47280 * 60.00000 * 1 2 3 27 27 H 1.09001 * 109.46803 * 300.00202 * 1 2 3 28 28 H 1.08996 * 109.47004 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47280 * 120.00000 * 2 1 3 30 30 H 1.09004 * 109.46700 * 299.99715 * 3 2 1 31 31 H 1.08991 * 109.46892 * 59.99909 * 3 2 1 32 32 H 1.08995 * 109.46838 * 179.97438 * 3 2 1 33 33 H 0.97003 * 120.00306 * 359.97438 * 8 6 5 34 34 H 1.09002 * 109.46932 * 299.99661 * 9 8 6 35 35 H 1.08993 * 109.46981 * 59.99550 * 9 8 6 36 36 H 1.09002 * 109.23578 * 320.80585 * 12 10 9 37 37 H 1.09003 * 109.23262 * 80.22188 * 12 10 9 38 38 H 0.96994 * 120.00091 * 179.97438 * 17 16 14 39 39 H 1.08989 * 109.49910 * 208.86806 * 22 13 12 40 40 H 1.09003 * 109.48985 * 328.95598 * 22 13 12 41 41 H 1.08998 * 109.43382 * 50.17016 * 23 22 13 42 42 H 1.08993 * 109.43395 * 170.08399 * 23 22 13 43 43 H 1.09004 * 108.64083 * 181.88226 * 24 23 22 44 44 H 1.08993 * 108.64421 * 299.71811 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0207 -0.6939 -1.2018 5 6 2.4120 -1.2474 -2.1604 6 6 2.8893 -1.9225 -3.3296 7 8 2.2638 -1.8524 -4.3703 8 7 4.0317 -2.6356 -3.2768 9 6 4.5203 -3.3258 -4.4732 10 6 5.8249 -4.0545 -4.1445 11 1 6.5406 -3.3457 -3.7280 12 6 6.4058 -4.6722 -5.4335 13 7 7.3557 -5.7625 -5.1098 14 6 7.3246 -6.9029 -5.8671 15 1 7.6592 -7.8397 -5.4466 16 6 6.8629 -6.8549 -7.1753 17 7 6.7448 -5.6968 -7.7895 18 14 6.4091 -8.4340 -8.0642 19 1 5.3211 -9.1231 -7.3248 20 1 5.9480 -8.1132 -9.4389 21 1 7.5979 -9.3210 -8.1355 22 6 8.3127 -5.6770 -4.0310 23 6 7.6634 -6.2029 -2.7269 24 6 6.6292 -5.2534 -2.2682 25 8 5.5699 -5.0672 -3.2042 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 -0.8901 31 1 1.6767 1.9563 0.8899 32 1 3.1300 1.4425 0.0005 33 1 4.5308 -2.6912 -2.4469 34 1 3.7746 -4.0476 -4.8062 35 1 4.7004 -2.5981 -5.2643 36 1 5.5921 -5.0727 -6.0381 37 1 6.9265 -3.8994 -5.9990 38 1 6.4225 -5.6633 -8.7037 39 1 9.1870 -6.2817 -4.2715 40 1 8.6145 -4.6386 -3.8940 41 1 7.2062 -7.1741 -2.9155 42 1 8.4280 -6.3053 -1.9568 43 1 6.2075 -5.6225 -1.3333 44 1 7.1010 -4.2895 -2.0779 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001149674193.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:22 Heat of formation + Delta-G solvation = -14.010450 kcal Electronic energy + Delta-G solvation = -23567.034105 eV Core-core repulsion = 20100.533216 eV Total energy + Delta-G solvation = -3466.500889 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.67739 -38.67569 -36.67384 -35.18180 -34.63650 -32.71018 -32.04819 -31.01245 -28.80529 -27.60088 -25.97308 -25.35063 -23.90942 -22.55382 -21.36414 -20.94413 -19.82953 -18.54846 -16.95756 -16.44990 -16.29020 -15.92570 -15.22378 -15.09769 -14.90524 -14.77281 -14.17211 -13.86260 -13.76919 -13.39824 -12.93445 -12.65818 -12.54589 -12.41983 -12.37622 -12.30950 -11.89923 -11.81463 -11.75044 -11.15035 -10.85871 -10.73396 -10.62635 -10.59074 -10.45383 -10.24144 -10.16131 -10.01944 -9.86376 -9.68175 -8.98007 -8.87007 -8.39646 -6.69613 -5.77370 -3.20246 1.54540 2.20579 3.09505 3.41183 3.47435 3.49277 3.53591 4.09218 4.26760 4.52205 4.56931 4.71016 4.78324 5.09923 5.19727 5.20701 5.37964 5.39151 5.44559 5.45661 5.51662 5.58492 5.63142 5.73704 5.79350 5.81434 5.89340 5.98741 6.08366 6.21797 6.28316 6.36899 6.44378 6.56978 6.75988 6.96659 7.11151 7.17107 7.51251 7.57298 7.82301 7.95048 8.19285 8.47044 9.22378 9.88953 10.32935 11.30738 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.022165 B = 0.003147 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.966532 B = 8894.745054 C = 9635.748470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.010 3.990 3 C -0.146 4.146 4 C -0.087 4.087 5 C -0.214 4.214 6 C 0.627 3.373 7 O -0.526 6.526 8 N -0.707 5.707 9 C 0.124 3.876 10 C 0.055 3.945 11 H 0.049 0.951 12 C 0.166 3.834 13 N -0.585 5.585 14 C -0.256 4.256 15 H 0.064 0.936 16 C 0.005 3.995 17 N -0.906 5.906 18 Si 0.903 3.097 19 H -0.284 1.284 20 H -0.290 1.290 21 H -0.283 1.283 22 C 0.157 3.843 23 C -0.184 4.184 24 C 0.078 3.922 25 O -0.360 6.360 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.100 0.900 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.402 0.598 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.038 0.962 38 H 0.255 0.745 39 H 0.051 0.949 40 H 0.028 0.972 41 H 0.070 0.930 42 H 0.058 0.942 43 H 0.066 0.934 44 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.650 11.362 17.389 21.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.008 4.008 3 C -0.203 4.203 4 C -0.089 4.089 5 C -0.217 4.217 6 C 0.413 3.587 7 O -0.404 6.404 8 N -0.357 5.357 9 C 0.001 3.999 10 C -0.005 4.005 11 H 0.066 0.934 12 C 0.040 3.960 13 N -0.306 5.306 14 C -0.385 4.385 15 H 0.082 0.918 16 C -0.193 4.193 17 N -0.551 5.551 18 Si 0.732 3.268 19 H -0.210 1.210 20 H -0.216 1.216 21 H -0.210 1.210 22 C 0.029 3.971 23 C -0.224 4.224 24 C 0.002 3.998 25 O -0.278 6.278 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.118 0.882 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.236 0.764 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.056 0.944 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.046 0.954 41 H 0.089 0.911 42 H 0.076 0.924 43 H 0.084 0.916 44 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -6.287 11.335 16.407 20.910 hybrid contribution 0.249 -0.821 -0.082 0.862 sum -6.038 10.514 16.325 20.335 Atomic orbital electron populations 1.21856 0.92893 1.02899 1.02810 1.18487 0.96282 0.95209 0.90838 1.21844 1.01751 0.93895 1.02852 1.22584 0.96838 0.94793 0.94686 1.20870 1.02858 1.02292 0.95673 1.14717 0.80976 0.78486 0.84544 1.90871 1.57080 1.62143 1.30262 1.45862 1.24226 1.50485 1.15126 1.21699 0.96224 0.95672 0.86332 1.23193 0.94091 0.89284 0.93945 0.93354 1.21631 0.93692 0.90476 0.90201 1.43567 1.35906 1.17176 1.33977 1.19127 1.40132 0.87037 0.92249 0.91816 1.25005 1.01668 0.96627 0.96050 1.70007 1.49843 1.23298 1.11929 0.86371 0.78598 0.83140 0.78651 1.21004 1.21615 1.20979 1.20672 0.91907 0.97243 0.87307 1.22303 0.98419 1.01346 1.00367 1.21306 0.89307 0.98072 0.91152 1.87454 1.40114 1.56590 1.43646 0.91884 0.91263 0.91934 0.88177 0.91918 0.91209 0.91943 0.76408 0.89979 0.89659 0.89711 0.94411 0.93501 0.93101 0.95360 0.91099 0.92363 0.91566 0.94757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.15 37.16 0.34 -0.60 16 2 C 0.01 0.07 3.30 -93.41 -0.31 -0.24 16 3 C -0.15 -0.87 9.15 37.16 0.34 -0.53 16 4 C -0.09 -0.97 12.56 -37.12 -0.47 -1.44 16 5 C -0.21 -2.98 13.61 -38.84 -0.53 -3.51 16 6 C 0.63 10.28 7.65 -14.34 -0.11 10.17 16 7 O -0.53 -10.59 17.09 5.26 0.09 -10.50 16 8 N -0.71 -10.54 5.49 -62.76 -0.34 -10.88 16 9 C 0.12 2.13 5.24 -4.04 -0.02 2.11 16 10 C 0.06 1.01 2.35 -26.06 -0.06 0.95 16 11 H 0.05 0.80 7.20 -51.93 -0.37 0.43 16 12 C 0.17 3.85 4.50 -2.44 -0.01 3.84 16 13 N -0.59 -14.33 2.59 -171.49 -0.44 -14.77 16 14 C -0.26 -6.97 9.43 -15.06 -0.14 -7.11 16 15 H 0.06 1.72 7.88 -52.49 -0.41 1.31 16 16 C 0.00 0.14 4.88 -17.43 -0.09 0.05 16 17 N -0.91 -26.01 10.98 55.49 0.61 -25.40 16 18 Si 0.90 22.00 29.58 -169.99 -5.03 16.97 16 19 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 C 0.16 3.18 5.68 -4.14 -0.02 3.15 16 23 C -0.18 -3.15 6.03 -28.31 -0.17 -3.32 16 24 C 0.08 1.24 6.04 34.59 0.21 1.45 16 25 O -0.36 -6.78 9.77 -34.10 -0.33 -7.11 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.40 5.05 8.43 -40.82 -0.34 4.71 16 34 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 35 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 36 H 0.08 2.23 6.24 -51.93 -0.32 1.91 16 37 H 0.04 0.93 8.02 -51.93 -0.42 0.51 16 38 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 39 H 0.05 1.04 7.96 -51.94 -0.41 0.63 16 40 H 0.03 0.53 8.10 -51.93 -0.42 0.11 16 41 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.03 0.48 7.27 -51.93 -0.38 0.10 16 LS Contribution 363.49 15.07 5.48 5.48 Total: -1.00 -32.19 363.49 -8.30 -40.49 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -7.29 Total: 0.75 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: -1.04 Total: 4.98 kcal Atomic # 7 Polarization: -50.87 SS G_CDS: -0.18 Total: -51.05 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -0.24 Total: -17.61 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.03 Total: 16.97 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.19 -8.30 -40.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149674193.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.484 kcal (2) G-P(sol) polarization free energy of solvation -32.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds