Wall clock time and date at job start Tue Mar 31 2020 07:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47308 * 2 1 4 4 C 1.47197 * 109.47287 * 240.00034 * 2 1 3 5 5 C 2.64601 * 109.47091 * 239.99755 * 2 1 3 6 6 C 4.07796 * 109.47080 * 239.99792 * 2 1 3 7 7 O 1.21621 * 120.00284 * 63.48286 * 6 5 4 8 8 N 1.34772 * 120.00076 * 243.48130 * 6 5 4 9 9 C 1.46507 * 120.00191 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.47196 * 179.97438 * 9 8 6 11 11 H 1.08996 * 109.40482 * 305.00389 * 10 9 8 12 12 C 1.54292 * 109.40552 * 185.15892 * 10 9 8 13 13 N 1.48178 * 110.69761 * 200.49099 * 12 10 9 14 14 C 1.36937 * 118.51676 * 138.77322 * 13 12 10 15 15 H 1.07995 * 120.00127 * 206.12870 * 14 13 12 16 16 C 1.38812 * 119.99810 * 26.12472 * 14 13 12 17 17 N 1.31620 * 120.00127 * 15.50752 * 16 14 13 18 18 Si 1.86801 * 120.00111 * 195.51019 * 16 14 13 19 19 H 1.48495 * 109.47118 * 60.00022 * 18 16 14 20 20 H 1.48501 * 109.47015 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46867 * 300.00370 * 18 16 14 22 22 C 1.44465 * 122.97432 * 318.79962 * 13 12 10 23 23 C 1.54878 * 109.32883 * 88.90739 * 22 13 12 24 24 C 1.47691 * 109.67951 * 290.10674 * 23 22 13 25 25 O 1.40528 * 109.40706 * 64.83734 * 10 9 8 26 26 H 1.09003 * 109.47280 * 60.00000 * 1 2 3 27 27 H 1.09001 * 109.46803 * 300.00202 * 1 2 3 28 28 H 1.08996 * 109.47004 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47280 * 120.00000 * 2 1 3 30 30 H 1.09004 * 109.46700 * 299.99715 * 3 2 1 31 31 H 1.08991 * 109.46892 * 59.99909 * 3 2 1 32 32 H 1.08995 * 109.46838 * 179.97438 * 3 2 1 33 33 H 0.97003 * 120.00306 * 359.97438 * 8 6 5 34 34 H 1.09002 * 109.46932 * 299.99661 * 9 8 6 35 35 H 1.08993 * 109.46981 * 59.99550 * 9 8 6 36 36 H 1.09002 * 109.23578 * 320.80585 * 12 10 9 37 37 H 1.09003 * 109.23262 * 80.22188 * 12 10 9 38 38 H 0.96994 * 120.00091 * 179.97438 * 17 16 14 39 39 H 1.08989 * 109.49910 * 208.86806 * 22 13 12 40 40 H 1.09003 * 109.48985 * 328.95598 * 22 13 12 41 41 H 1.08998 * 109.43382 * 50.17016 * 23 22 13 42 42 H 1.08993 * 109.43395 * 170.08399 * 23 22 13 43 43 H 1.09004 * 108.64083 * 181.88226 * 24 23 22 44 44 H 1.08993 * 108.64421 * 299.71811 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0207 -0.6939 -1.2018 5 6 2.4120 -1.2474 -2.1604 6 6 2.8893 -1.9225 -3.3296 7 8 2.2638 -1.8524 -4.3703 8 7 4.0317 -2.6356 -3.2768 9 6 4.5203 -3.3258 -4.4732 10 6 5.8249 -4.0545 -4.1445 11 1 6.5406 -3.3457 -3.7280 12 6 6.4058 -4.6722 -5.4335 13 7 7.3557 -5.7625 -5.1098 14 6 7.3246 -6.9029 -5.8671 15 1 7.6592 -7.8397 -5.4466 16 6 6.8629 -6.8549 -7.1753 17 7 6.7448 -5.6968 -7.7895 18 14 6.4091 -8.4340 -8.0642 19 1 5.3211 -9.1231 -7.3248 20 1 5.9480 -8.1132 -9.4389 21 1 7.5979 -9.3210 -8.1355 22 6 8.3127 -5.6770 -4.0310 23 6 7.6634 -6.2029 -2.7269 24 6 6.6292 -5.2534 -2.2682 25 8 5.5699 -5.0672 -3.2042 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 -0.8901 31 1 1.6767 1.9563 0.8899 32 1 3.1300 1.4425 0.0005 33 1 4.5308 -2.6912 -2.4469 34 1 3.7746 -4.0476 -4.8062 35 1 4.7004 -2.5981 -5.2643 36 1 5.5921 -5.0727 -6.0381 37 1 6.9265 -3.8994 -5.9990 38 1 6.4225 -5.6633 -8.7037 39 1 9.1870 -6.2817 -4.2715 40 1 8.6145 -4.6386 -3.8940 41 1 7.2062 -7.1741 -2.9155 42 1 8.4280 -6.3053 -1.9568 43 1 6.2075 -5.6225 -1.3333 44 1 7.1010 -4.2895 -2.0779 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001149674193.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:22 Heat of formation + Delta-G solvation = -35.251833 kcal Electronic energy + Delta-G solvation = -23567.955200 eV Core-core repulsion = 20100.533216 eV Total energy + Delta-G solvation = -3467.421984 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.04791 -40.13542 -37.33645 -36.91024 -36.10532 -34.20919 -33.25993 -32.64381 -30.38705 -28.05565 -27.56165 -27.05956 -25.21204 -23.86540 -22.48929 -22.30474 -21.51333 -19.78574 -18.82481 -17.79702 -17.53042 -17.08577 -16.82268 -16.39192 -16.30258 -15.83173 -15.53914 -15.39604 -14.94530 -14.59376 -14.39612 -14.23253 -13.96747 -13.84942 -13.36135 -13.09752 -13.03194 -12.94028 -12.73435 -12.52037 -12.47249 -12.32571 -12.31629 -12.01746 -11.86740 -11.64941 -11.42406 -11.37857 -11.36313 -11.19428 -10.57108 -10.31645 -10.28392 -8.67622 -7.86274 -5.30963 0.44567 1.21405 1.43806 1.47797 1.53340 1.94509 2.40876 2.51124 2.89090 3.13149 3.28260 3.55720 4.00366 4.04021 4.06823 4.12406 4.17683 4.20900 4.25800 4.43178 4.49158 4.55632 4.59425 4.76476 4.79322 4.82844 4.88266 4.94034 4.95430 5.11623 5.12330 5.14609 5.22505 5.30707 5.33537 5.35431 5.51434 5.61273 5.70502 6.16386 6.31030 6.39553 6.55192 6.96250 7.16938 7.93082 8.30694 9.18551 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.022165 B = 0.003147 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.966532 B = 8894.745054 C = 9635.748470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.005 3.995 3 C -0.145 4.145 4 C -0.038 4.038 5 C -0.273 4.273 6 C 0.630 3.370 7 O -0.575 6.575 8 N -0.691 5.691 9 C 0.134 3.866 10 C 0.077 3.923 11 H 0.077 0.923 12 C 0.173 3.827 13 N -0.603 5.603 14 C -0.261 4.261 15 H 0.062 0.938 16 C -0.049 4.049 17 N -0.933 5.933 18 Si 0.960 3.040 19 H -0.284 1.284 20 H -0.294 1.294 21 H -0.274 1.274 22 C 0.147 3.853 23 C -0.170 4.170 24 C 0.067 3.933 25 O -0.379 6.379 26 H 0.051 0.949 27 H 0.096 0.904 28 H 0.055 0.945 29 H 0.129 0.871 30 H 0.051 0.949 31 H 0.096 0.904 32 H 0.061 0.939 33 H 0.416 0.584 34 H 0.056 0.944 35 H 0.081 0.919 36 H 0.044 0.956 37 H 0.015 0.985 38 H 0.249 0.751 39 H 0.042 0.958 40 H 0.046 0.954 41 H 0.042 0.958 42 H 0.097 0.903 43 H 0.095 0.905 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.545 12.246 21.144 25.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.013 4.013 3 C -0.202 4.202 4 C -0.040 4.040 5 C -0.276 4.276 6 C 0.418 3.582 7 O -0.457 6.457 8 N -0.342 5.342 9 C 0.010 3.990 10 C 0.017 3.983 11 H 0.095 0.905 12 C 0.047 3.953 13 N -0.325 5.325 14 C -0.392 4.392 15 H 0.079 0.921 16 C -0.244 4.244 17 N -0.580 5.580 18 Si 0.789 3.211 19 H -0.211 1.211 20 H -0.220 1.220 21 H -0.199 1.199 22 C 0.021 3.979 23 C -0.210 4.210 24 C -0.009 4.009 25 O -0.298 6.298 26 H 0.070 0.930 27 H 0.115 0.885 28 H 0.075 0.925 29 H 0.146 0.854 30 H 0.070 0.930 31 H 0.114 0.886 32 H 0.080 0.920 33 H 0.253 0.747 34 H 0.074 0.926 35 H 0.100 0.900 36 H 0.062 0.938 37 H 0.033 0.967 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.116 0.884 43 H 0.113 0.887 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.141 12.210 20.236 24.419 hybrid contribution 0.256 -1.061 -1.100 1.549 sum -5.886 11.149 19.136 22.916 Atomic orbital electron populations 1.21887 0.92078 1.02818 1.03695 1.18915 0.96855 0.95846 0.89694 1.21866 1.01779 0.92860 1.03693 1.23523 0.94006 0.92249 0.94254 1.20461 1.05745 1.04829 0.96562 1.14967 0.80549 0.77954 0.84768 1.90835 1.58486 1.63997 1.32352 1.45605 1.24030 1.49630 1.14888 1.21373 0.95245 0.95146 0.87238 1.22768 0.94545 0.89310 0.91705 0.90505 1.21372 0.92185 0.89519 0.92243 1.43812 1.37329 1.16544 1.34823 1.19400 1.39122 0.88078 0.92557 0.92069 1.25692 1.02525 0.99176 0.97005 1.70159 1.51157 1.24895 1.11762 0.85453 0.78351 0.80146 0.77191 1.21089 1.22043 1.19931 1.20921 0.91116 0.98401 0.87508 1.22149 0.99484 0.99966 0.99431 1.21596 0.88715 0.99372 0.91216 1.87456 1.41607 1.56739 1.43955 0.92996 0.88476 0.92538 0.85377 0.92976 0.88560 0.91960 0.74658 0.92587 0.90048 0.93788 0.96737 0.94211 0.93974 0.93556 0.93903 0.88441 0.88655 0.91794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.15 71.98 0.66 -0.79 16 2 C 0.00 0.05 3.30 -12.60 -0.04 0.01 16 3 C -0.14 -1.24 9.15 71.98 0.66 -0.58 16 4 C -0.04 -0.77 12.56 31.12 0.39 -0.38 16 5 C -0.27 -7.44 13.61 30.01 0.41 -7.04 16 6 C 0.63 21.06 7.65 85.49 0.65 21.71 16 7 O -0.58 -24.27 17.09 -4.10 -0.07 -24.34 16 8 N -0.69 -20.43 5.49 -470.74 -2.58 -23.01 16 9 C 0.13 4.74 5.24 86.38 0.45 5.19 16 10 C 0.08 2.78 2.35 31.03 0.07 2.85 16 11 H 0.08 2.35 7.20 -2.39 -0.02 2.34 16 12 C 0.17 8.29 4.50 86.49 0.39 8.68 16 13 N -0.60 -29.88 2.59 -696.46 -1.80 -31.68 16 14 C -0.26 -14.52 9.43 84.03 0.79 -13.73 16 15 H 0.06 3.36 7.88 -2.91 -0.02 3.33 16 16 C -0.05 -2.78 4.88 84.86 0.41 -2.36 16 17 N -0.93 -55.81 10.98 21.65 0.24 -55.57 16 18 Si 0.96 46.42 29.58 68.60 2.03 48.45 16 19 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 20 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 21 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 22 C 0.15 5.76 5.68 87.40 0.50 6.26 16 23 C -0.17 -5.36 6.03 29.57 0.18 -5.19 16 24 C 0.07 1.88 6.04 70.32 0.42 2.30 16 25 O -0.38 -13.73 9.77 -144.93 -1.42 -15.14 16 26 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.13 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.42 9.74 8.43 -92.71 -0.78 8.96 16 34 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.08 2.93 8.14 -2.39 -0.02 2.91 16 36 H 0.04 2.44 6.24 -2.39 -0.01 2.43 16 37 H 0.01 0.75 8.02 -2.39 -0.02 0.73 16 38 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 39 H 0.04 1.69 7.96 -2.39 -0.02 1.67 16 40 H 0.05 1.64 8.10 -2.39 -0.02 1.62 16 41 H 0.04 1.59 8.14 -2.39 -0.02 1.58 16 42 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 43 H 0.10 2.19 8.14 -2.38 -0.02 2.17 16 44 H 0.06 1.46 7.27 -2.39 -0.02 1.44 16 Total: -1.00 -73.96 363.49 2.55 -71.41 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: 0.21 Total: 12.96 kcal Atomic # 6 Polarization: 10.98 SS G_CDS: 5.95 Total: 16.93 kcal Atomic # 7 Polarization: -106.12 SS G_CDS: -4.15 Total: -110.27 kcal Atomic # 8 Polarization: -38.00 SS G_CDS: -1.49 Total: -39.48 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Total: -73.96 2.55 -71.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149674193.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.157 kcal (2) G-P(sol) polarization free energy of solvation -73.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds