Wall clock time and date at job start Tue Mar 31 2020 07:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47240 * 2 1 4 4 C 1.47195 * 109.47118 * 120.00266 * 2 1 3 5 5 C 2.64598 * 109.47142 * 120.00177 * 2 1 3 6 6 C 4.07795 * 109.47212 * 120.00221 * 2 1 3 7 7 O 1.21612 * 120.00150 * 233.14607 * 6 5 4 8 8 N 1.34783 * 120.00107 * 53.14773 * 6 5 4 9 9 C 1.46496 * 119.99823 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.47057 * 180.02562 * 9 8 6 11 11 H 1.08996 * 108.45273 * 62.11793 * 10 9 8 12 12 C 1.46916 * 108.62121 * 179.97438 * 10 9 8 13 13 N 1.50121 * 106.77811 * 177.91553 * 12 10 9 14 14 C 1.36941 * 120.63673 * 111.37197 * 13 12 10 15 15 H 1.07995 * 119.99553 * 155.67646 * 14 13 12 16 16 C 1.38807 * 119.99882 * 335.67901 * 14 13 12 17 17 N 1.31617 * 120.00429 * 340.63440 * 16 14 13 18 18 Si 1.86801 * 119.99962 * 160.63315 * 16 14 13 19 19 H 1.48504 * 109.47022 * 60.00018 * 18 16 14 20 20 H 1.48499 * 109.46988 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47298 * 300.00094 * 18 16 14 22 22 C 1.43420 * 118.72739 * 291.35625 * 13 12 10 23 23 C 1.55329 * 116.24557 * 89.35077 * 22 13 12 24 24 C 1.55188 * 108.87350 * 319.46419 * 23 22 13 25 25 O 1.39645 * 110.56266 * 322.14327 * 24 23 22 26 26 H 1.08994 * 109.47200 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47016 * 300.00136 * 1 2 3 28 28 H 1.08997 * 109.47265 * 59.99806 * 1 2 3 29 29 H 1.08999 * 109.47199 * 240.00542 * 2 1 3 30 30 H 1.09000 * 109.46994 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.47149 * 300.00264 * 3 2 1 32 32 H 1.09005 * 109.47227 * 59.99993 * 3 2 1 33 33 H 0.96993 * 119.99696 * 0.02562 * 8 6 5 34 34 H 1.08994 * 109.47440 * 59.99853 * 9 8 6 35 35 H 1.09006 * 109.47529 * 299.99637 * 9 8 6 36 36 H 1.09003 * 109.98961 * 58.60456 * 12 10 9 37 37 H 1.08994 * 109.99664 * 297.23286 * 12 10 9 38 38 H 0.97001 * 120.00291 * 180.02562 * 17 16 14 39 39 H 1.09001 * 108.12779 * 211.11455 * 22 13 12 40 40 H 1.09003 * 108.12553 * 327.81110 * 22 13 12 41 41 H 1.09003 * 109.56669 * 79.27858 * 23 22 13 42 42 H 1.09000 * 109.57324 * 199.64678 * 23 22 13 43 43 H 1.08999 * 109.25678 * 82.41957 * 24 23 22 44 44 H 1.08992 * 109.26225 * 201.86354 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0206 -0.6939 1.2018 5 6 2.4120 -1.2474 2.1604 6 6 2.8894 -1.9225 3.3295 7 8 3.2106 -1.2827 4.3126 8 7 2.9827 -3.2670 3.3405 9 6 3.4706 -3.9576 4.5368 10 6 3.4791 -5.4670 4.2865 11 1 4.1668 -5.6770 3.4674 12 6 3.9713 -6.1403 5.4960 13 7 3.9138 -7.6156 5.2244 14 6 5.0645 -8.3464 5.0934 15 1 5.0549 -9.4084 5.2897 16 6 6.2430 -7.7223 4.7082 17 7 6.2021 -6.5509 4.1096 18 14 7.8870 -8.5449 5.0396 19 1 7.9327 -9.8571 4.3459 20 1 8.9838 -7.6802 4.5349 21 1 8.0515 -8.7516 6.5009 22 6 2.6307 -8.2451 5.1052 23 6 2.0127 -8.2807 3.6806 24 6 2.2810 -6.9207 2.9829 25 8 2.1705 -5.8705 3.8967 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5137 -0.8900 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9564 0.8900 33 1 2.7269 -3.7773 2.5563 34 1 2.8161 -3.7323 5.3787 35 1 4.4826 -3.6216 4.7631 36 1 3.3347 -5.8928 6.3455 37 1 4.9988 -5.8385 5.6985 38 1 7.0256 -6.1149 3.8401 39 1 2.7220 -9.2714 5.4610 40 1 1.9342 -7.7222 5.7607 41 1 2.4714 -9.0838 3.1037 42 1 0.9381 -8.4483 3.7528 43 1 3.2857 -6.9254 2.5605 44 1 1.5556 -6.7782 2.1821 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001149674194.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:26 Heat of formation + Delta-G solvation = -10.502062 kcal Electronic energy + Delta-G solvation = -23906.719104 eV Core-core repulsion = 20440.370350 eV Total energy + Delta-G solvation = -3466.348754 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.61419 -38.68936 -36.57491 -35.04353 -34.53721 -32.41449 -31.85913 -31.06775 -28.67696 -27.51918 -25.96457 -25.33932 -23.78991 -22.51226 -21.21925 -20.80987 -19.62799 -18.46307 -17.07011 -16.33453 -16.10009 -15.65888 -15.06423 -14.92558 -14.78874 -14.53948 -14.24111 -13.90092 -13.76557 -13.28056 -13.04315 -12.63758 -12.56542 -12.32886 -12.27645 -12.00393 -11.75007 -11.69765 -11.42835 -11.24562 -10.86469 -10.76843 -10.53203 -10.47075 -10.32714 -10.18459 -10.04034 -9.94647 -9.69076 -9.53237 -8.83569 -8.74684 -8.52297 -6.84096 -5.93749 -3.32390 1.67826 2.33203 3.27316 3.33257 3.40141 3.41982 3.67252 4.24411 4.42671 4.65237 4.68137 4.79849 4.89390 5.21229 5.26790 5.28125 5.29912 5.46894 5.54252 5.65005 5.74079 5.80332 5.87939 5.88881 5.90472 5.96440 6.12331 6.30619 6.38993 6.44469 6.50594 6.65077 6.68141 6.79085 6.87137 6.93789 7.09540 7.23440 7.30485 7.70301 7.72260 8.10229 8.30609 8.36086 9.05461 9.73617 10.27865 11.15485 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018998 B = 0.003479 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.468752 B = 8047.064378 C = 8709.779306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.010 3.990 3 C -0.147 4.147 4 C -0.091 4.091 5 C -0.211 4.211 6 C 0.625 3.375 7 O -0.534 6.534 8 N -0.698 5.698 9 C 0.120 3.880 10 C 0.060 3.940 11 H 0.108 0.892 12 C 0.143 3.857 13 N -0.587 5.587 14 C -0.250 4.250 15 H 0.069 0.931 16 C 0.003 3.997 17 N -0.908 5.908 18 Si 0.905 3.095 19 H -0.284 1.284 20 H -0.290 1.290 21 H -0.284 1.284 22 C 0.161 3.839 23 C -0.172 4.172 24 C 0.067 3.933 25 O -0.370 6.370 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.100 0.900 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.404 0.596 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.020 0.980 37 H 0.105 0.895 38 H 0.256 0.744 39 H 0.033 0.967 40 H 0.032 0.968 41 H 0.056 0.944 42 H 0.050 0.950 43 H 0.063 0.937 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.431 9.138 -8.796 15.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.008 4.008 3 C -0.204 4.204 4 C -0.093 4.093 5 C -0.213 4.213 6 C 0.411 3.589 7 O -0.412 6.412 8 N -0.348 5.348 9 C -0.004 4.004 10 C 0.002 3.998 11 H 0.125 0.875 12 C 0.018 3.982 13 N -0.308 5.308 14 C -0.379 4.379 15 H 0.087 0.913 16 C -0.195 4.195 17 N -0.553 5.553 18 Si 0.735 3.265 19 H -0.210 1.210 20 H -0.216 1.216 21 H -0.211 1.211 22 C 0.032 3.968 23 C -0.213 4.213 24 C -0.011 4.011 25 O -0.288 6.288 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.118 0.882 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.239 0.761 34 H 0.084 0.916 35 H 0.101 0.899 36 H 0.039 0.961 37 H 0.123 0.877 38 H 0.066 0.934 39 H 0.052 0.948 40 H 0.050 0.950 41 H 0.075 0.925 42 H 0.068 0.932 43 H 0.081 0.919 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.198 9.716 -8.007 15.592 hybrid contribution 0.964 -0.863 -0.473 1.378 sum -8.233 8.854 -8.480 14.768 Atomic orbital electron populations 1.21839 0.92856 1.02882 1.02739 1.18466 0.96181 0.95202 0.90909 1.21854 1.01820 0.94038 1.02705 1.22553 0.94738 0.97524 0.94527 1.20925 1.03392 1.01164 0.95864 1.14742 0.78171 0.82089 0.83899 1.90835 1.49744 1.66412 1.34239 1.45789 1.65198 1.05277 1.18494 1.21825 0.99923 0.92200 0.86404 1.22221 0.84200 0.90063 1.03360 0.87465 1.20746 1.01490 0.83408 0.92536 1.44103 1.00929 1.04415 1.81320 1.19223 0.86393 0.92938 1.39368 0.91315 1.24897 0.98615 0.97623 0.98388 1.69848 1.26857 1.17302 1.41337 0.86326 0.83421 0.78535 0.78235 1.21048 1.21627 1.21062 1.20376 0.87460 0.96217 0.92789 1.23582 0.99107 0.97307 1.01315 1.22354 1.00799 0.87343 0.90628 1.87513 1.28069 1.50836 1.62413 0.91879 0.91987 0.91270 0.88187 0.91958 0.91338 0.91945 0.76133 0.91561 0.89913 0.96140 0.87736 0.93365 0.94847 0.94998 0.92487 0.93172 0.91854 0.93090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.15 37.16 0.34 -0.68 16 2 C 0.01 0.09 3.30 -93.41 -0.31 -0.22 16 3 C -0.15 -1.06 9.15 37.16 0.34 -0.72 16 4 C -0.09 -1.14 12.56 -37.12 -0.47 -1.60 16 5 C -0.21 -3.23 13.61 -38.84 -0.53 -3.76 16 6 C 0.63 11.16 7.65 -14.33 -0.11 11.05 16 7 O -0.53 -11.24 17.08 5.27 0.09 -11.15 16 8 N -0.70 -11.83 5.39 -62.77 -0.34 -12.17 16 9 C 0.12 2.24 5.26 -4.04 -0.02 2.21 16 10 C 0.06 1.22 2.00 -29.65 -0.06 1.16 16 11 H 0.11 2.44 5.25 -51.93 -0.27 2.16 16 12 C 0.14 3.21 4.71 -4.93 -0.02 3.19 16 13 N -0.59 -13.99 2.61 -174.50 -0.46 -14.44 16 14 C -0.25 -6.47 9.62 -15.06 -0.14 -6.61 16 15 H 0.07 1.78 7.88 -52.49 -0.41 1.36 16 16 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 17 N -0.91 -23.58 9.57 55.49 0.53 -23.05 16 18 Si 0.90 20.80 29.60 -169.99 -5.03 15.77 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 C 0.16 3.37 5.33 -4.44 -0.02 3.34 16 23 C -0.17 -3.18 6.75 -24.34 -0.16 -3.35 16 24 C 0.07 1.23 6.38 38.32 0.24 1.48 16 25 O -0.37 -7.19 9.34 -31.95 -0.30 -7.49 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.40 6.23 8.15 -40.82 -0.33 5.90 16 34 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.10 2.57 6.03 -51.93 -0.31 2.26 16 38 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 39 H 0.03 0.69 7.96 -51.93 -0.41 0.28 16 40 H 0.03 0.65 7.98 -51.93 -0.41 0.24 16 41 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.06 1.32 6.66 -51.93 -0.35 0.97 16 44 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 359.36 15.07 5.42 5.42 Total: -1.00 -28.89 359.36 -8.23 -37.12 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -7.14 Total: 4.53 kcal Atomic # 6 Polarization: 6.48 SS G_CDS: -1.01 Total: 5.47 kcal Atomic # 7 Polarization: -49.40 SS G_CDS: -0.26 Total: -49.66 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: -0.21 Total: -18.64 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.03 Total: 15.77 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -28.89 -8.23 -37.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149674194.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.619 kcal (2) G-P(sol) polarization free energy of solvation -28.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds