Wall clock time and date at job start Tue Mar 31 2020 07:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47240 * 2 1 4 4 C 1.47195 * 109.47118 * 120.00266 * 2 1 3 5 5 C 2.64598 * 109.47142 * 120.00177 * 2 1 3 6 6 C 4.07795 * 109.47212 * 120.00221 * 2 1 3 7 7 O 1.21612 * 120.00150 * 233.14607 * 6 5 4 8 8 N 1.34783 * 120.00107 * 53.14773 * 6 5 4 9 9 C 1.46496 * 119.99823 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.47057 * 180.02562 * 9 8 6 11 11 H 1.08996 * 108.45273 * 62.11793 * 10 9 8 12 12 C 1.46916 * 108.62121 * 179.97438 * 10 9 8 13 13 N 1.50121 * 106.77811 * 177.91553 * 12 10 9 14 14 C 1.36941 * 120.63673 * 111.37197 * 13 12 10 15 15 H 1.07995 * 119.99553 * 155.67646 * 14 13 12 16 16 C 1.38807 * 119.99882 * 335.67901 * 14 13 12 17 17 N 1.31617 * 120.00429 * 340.63440 * 16 14 13 18 18 Si 1.86801 * 119.99962 * 160.63315 * 16 14 13 19 19 H 1.48504 * 109.47022 * 60.00018 * 18 16 14 20 20 H 1.48499 * 109.46988 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47298 * 300.00094 * 18 16 14 22 22 C 1.43420 * 118.72739 * 291.35625 * 13 12 10 23 23 C 1.55329 * 116.24557 * 89.35077 * 22 13 12 24 24 C 1.55188 * 108.87350 * 319.46419 * 23 22 13 25 25 O 1.39645 * 110.56266 * 322.14327 * 24 23 22 26 26 H 1.08994 * 109.47200 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47016 * 300.00136 * 1 2 3 28 28 H 1.08997 * 109.47265 * 59.99806 * 1 2 3 29 29 H 1.08999 * 109.47199 * 240.00542 * 2 1 3 30 30 H 1.09000 * 109.46994 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.47149 * 300.00264 * 3 2 1 32 32 H 1.09005 * 109.47227 * 59.99993 * 3 2 1 33 33 H 0.96993 * 119.99696 * 0.02562 * 8 6 5 34 34 H 1.08994 * 109.47440 * 59.99853 * 9 8 6 35 35 H 1.09006 * 109.47529 * 299.99637 * 9 8 6 36 36 H 1.09003 * 109.98961 * 58.60456 * 12 10 9 37 37 H 1.08994 * 109.99664 * 297.23286 * 12 10 9 38 38 H 0.97001 * 120.00291 * 180.02562 * 17 16 14 39 39 H 1.09001 * 108.12779 * 211.11455 * 22 13 12 40 40 H 1.09003 * 108.12553 * 327.81110 * 22 13 12 41 41 H 1.09003 * 109.56669 * 79.27858 * 23 22 13 42 42 H 1.09000 * 109.57324 * 199.64678 * 23 22 13 43 43 H 1.08999 * 109.25678 * 82.41957 * 24 23 22 44 44 H 1.08992 * 109.26225 * 201.86354 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0206 -0.6939 1.2018 5 6 2.4120 -1.2474 2.1604 6 6 2.8894 -1.9225 3.3295 7 8 3.2106 -1.2827 4.3126 8 7 2.9827 -3.2670 3.3405 9 6 3.4706 -3.9576 4.5368 10 6 3.4791 -5.4670 4.2865 11 1 4.1668 -5.6770 3.4674 12 6 3.9713 -6.1403 5.4960 13 7 3.9138 -7.6156 5.2244 14 6 5.0645 -8.3464 5.0934 15 1 5.0549 -9.4084 5.2897 16 6 6.2430 -7.7223 4.7082 17 7 6.2021 -6.5509 4.1096 18 14 7.8870 -8.5449 5.0396 19 1 7.9327 -9.8571 4.3459 20 1 8.9838 -7.6802 4.5349 21 1 8.0515 -8.7516 6.5009 22 6 2.6307 -8.2451 5.1052 23 6 2.0127 -8.2807 3.6806 24 6 2.2810 -6.9207 2.9829 25 8 2.1705 -5.8705 3.8967 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5137 -0.8900 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9564 0.8900 33 1 2.7269 -3.7773 2.5563 34 1 2.8161 -3.7323 5.3787 35 1 4.4826 -3.6216 4.7631 36 1 3.3347 -5.8928 6.3455 37 1 4.9988 -5.8385 5.6985 38 1 7.0256 -6.1149 3.8401 39 1 2.7220 -9.2714 5.4610 40 1 1.9342 -7.7222 5.7607 41 1 2.4714 -9.0838 3.1037 42 1 0.9381 -8.4483 3.7528 43 1 3.2857 -6.9254 2.5605 44 1 1.5556 -6.7782 2.1821 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001149674194.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:25 Heat of formation + Delta-G solvation = -27.700147 kcal Electronic energy + Delta-G solvation = -23907.464869 eV Core-core repulsion = 20440.370350 eV Total energy + Delta-G solvation = -3467.094519 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.13597 -40.24005 -37.33356 -36.81782 -36.06640 -33.94289 -33.28683 -32.61133 -30.33010 -28.05470 -27.55504 -27.07774 -25.13943 -23.90895 -22.45439 -22.35389 -21.31426 -19.79814 -18.90914 -17.74513 -17.41880 -16.99036 -16.66690 -16.46775 -16.09034 -15.92102 -15.54050 -15.50633 -14.87914 -14.72962 -14.43965 -14.23063 -13.96707 -13.61654 -13.28756 -13.09803 -12.98637 -12.92547 -12.62445 -12.55046 -12.47874 -12.32755 -12.31339 -11.93375 -11.83727 -11.59804 -11.39913 -11.34231 -11.21565 -11.17995 -10.56283 -10.31328 -10.22264 -8.72657 -7.89879 -5.30544 0.46426 1.22851 1.48330 1.52248 1.57199 2.02734 2.42621 2.52239 3.05877 3.19044 3.27428 3.49726 4.03484 4.06473 4.16346 4.18277 4.25949 4.35809 4.37624 4.47441 4.55977 4.72307 4.75078 4.78296 4.79386 4.90582 4.94052 4.95356 5.06038 5.11355 5.17518 5.17913 5.26698 5.33069 5.33892 5.35423 5.39598 5.48340 5.67952 6.17082 6.33646 6.37655 6.48677 6.97963 7.10562 7.82840 8.35729 9.16073 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018998 B = 0.003479 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.468752 B = 8047.064378 C = 8709.779306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.004 3.996 3 C -0.146 4.146 4 C -0.041 4.041 5 C -0.273 4.273 6 C 0.628 3.372 7 O -0.576 6.576 8 N -0.690 5.690 9 C 0.131 3.869 10 C 0.080 3.920 11 H 0.085 0.915 12 C 0.144 3.856 13 N -0.601 5.601 14 C -0.264 4.264 15 H 0.064 0.936 16 C -0.036 4.036 17 N -0.918 5.918 18 Si 0.960 3.040 19 H -0.281 1.281 20 H -0.294 1.294 21 H -0.285 1.285 22 C 0.153 3.847 23 C -0.164 4.164 24 C 0.067 3.933 25 O -0.367 6.367 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.097 0.903 29 H 0.126 0.874 30 H 0.055 0.945 31 H 0.097 0.903 32 H 0.052 0.948 33 H 0.413 0.587 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.027 0.973 37 H 0.080 0.920 38 H 0.251 0.749 39 H 0.032 0.968 40 H 0.035 0.965 41 H 0.054 0.946 42 H 0.079 0.921 43 H 0.037 0.963 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.958 9.587 -10.826 18.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.014 4.014 3 C -0.203 4.203 4 C -0.044 4.044 5 C -0.276 4.276 6 C 0.416 3.584 7 O -0.457 6.457 8 N -0.339 5.339 9 C 0.006 3.994 10 C 0.021 3.979 11 H 0.103 0.897 12 C 0.020 3.980 13 N -0.323 5.323 14 C -0.394 4.394 15 H 0.082 0.918 16 C -0.233 4.233 17 N -0.564 5.564 18 Si 0.789 3.211 19 H -0.207 1.207 20 H -0.221 1.221 21 H -0.212 1.212 22 C 0.025 3.975 23 C -0.205 4.205 24 C -0.011 4.011 25 O -0.286 6.286 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.115 0.885 29 H 0.144 0.856 30 H 0.074 0.926 31 H 0.116 0.884 32 H 0.072 0.928 33 H 0.249 0.751 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.045 0.955 37 H 0.098 0.902 38 H 0.061 0.939 39 H 0.050 0.950 40 H 0.054 0.946 41 H 0.073 0.927 42 H 0.097 0.903 43 H 0.055 0.945 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.756 10.139 -10.059 17.880 hybrid contribution 1.363 -0.992 0.098 1.689 sum -9.393 9.147 -9.961 16.465 Atomic orbital electron populations 1.21860 0.91414 1.03074 1.03770 1.18915 0.97246 0.95636 0.89564 1.21880 1.01458 0.93254 1.03758 1.23544 0.91646 0.95154 0.94033 1.20562 1.06439 1.03730 0.96901 1.14969 0.77213 0.81957 0.84235 1.90795 1.51753 1.67137 1.36057 1.45650 1.64831 1.05281 1.18178 1.21549 0.99294 0.91352 0.87163 1.21771 0.84122 0.90590 1.01402 0.89728 1.20668 1.00293 0.83323 0.93755 1.44228 1.01453 1.04784 1.81823 1.19375 0.87559 0.93011 1.39445 0.91840 1.25476 1.00866 0.98354 0.98559 1.69981 1.26825 1.17951 1.41630 0.85469 0.80247 0.77688 0.77707 1.20662 1.22063 1.21197 1.20502 0.86464 0.95914 0.94595 1.23493 1.00579 0.97194 0.99247 1.22418 1.00400 0.87130 0.91143 1.87510 1.27174 1.51191 1.62713 0.92138 0.92815 0.88465 0.85628 0.92612 0.88425 0.92835 0.75133 0.91590 0.91254 0.95499 0.90201 0.93949 0.94971 0.94648 0.92720 0.90283 0.94495 0.89572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.15 71.98 0.66 -0.89 16 2 C 0.00 0.06 3.30 -12.60 -0.04 0.01 16 3 C -0.15 -1.70 9.15 71.98 0.66 -1.04 16 4 C -0.04 -0.97 12.56 31.12 0.39 -0.58 16 5 C -0.27 -8.36 13.61 30.01 0.41 -7.95 16 6 C 0.63 23.00 7.65 85.49 0.65 23.65 16 7 O -0.58 -25.16 17.08 -4.07 -0.07 -25.23 16 8 N -0.69 -23.76 5.39 -470.75 -2.54 -26.30 16 9 C 0.13 5.00 5.26 86.38 0.45 5.46 16 10 C 0.08 3.29 2.00 28.71 0.06 3.34 16 11 H 0.09 3.94 5.25 -2.39 -0.01 3.92 16 12 C 0.14 6.62 4.71 83.78 0.39 7.01 16 13 N -0.60 -28.87 2.61 -706.01 -1.84 -30.71 16 14 C -0.26 -13.81 9.62 84.03 0.81 -13.00 16 15 H 0.06 3.32 7.88 -2.91 -0.02 3.29 16 16 C -0.04 -1.89 4.92 84.86 0.42 -1.47 16 17 N -0.92 -48.69 9.57 21.65 0.21 -48.48 16 18 Si 0.96 43.18 29.60 68.60 2.03 45.21 16 19 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 20 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 21 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 22 C 0.15 6.31 5.33 87.75 0.47 6.78 16 23 C -0.16 -5.77 6.75 32.14 0.22 -5.55 16 24 C 0.07 2.37 6.38 72.73 0.46 2.83 16 25 O -0.37 -13.93 9.34 -137.24 -1.28 -15.21 16 26 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 28 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 33 H 0.41 12.69 8.15 -92.71 -0.76 11.93 16 34 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 35 H 0.07 2.83 8.14 -2.38 -0.02 2.82 16 36 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.08 4.07 6.03 -2.39 -0.01 4.05 16 38 H 0.25 13.21 8.31 -92.71 -0.77 12.44 16 39 H 0.03 1.31 7.96 -2.39 -0.02 1.29 16 40 H 0.04 1.41 7.98 -2.39 -0.02 1.39 16 41 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 43 H 0.04 1.52 6.66 -2.39 -0.02 1.51 16 44 H 0.09 2.48 8.14 -2.39 -0.02 2.47 16 Total: -1.00 -63.26 359.36 2.75 -60.50 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: 0.24 Total: 21.60 kcal Atomic # 6 Polarization: 12.60 SS G_CDS: 6.01 Total: 18.61 kcal Atomic # 7 Polarization: -101.32 SS G_CDS: -4.17 Total: -105.50 kcal Atomic # 8 Polarization: -39.08 SS G_CDS: -1.35 Total: -40.44 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -63.26 2.75 -60.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149674194.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.804 kcal (2) G-P(sol) polarization free energy of solvation -63.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds