Wall clock time and date at job start Tue Mar 31 2020 06:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50697 * 109.47308 * 2 1 4 4 O 1.33657 * 125.80500 * 270.19012 * 3 2 1 5 5 C 1.34211 * 110.91195 * 180.28191 * 4 3 2 6 6 C 1.34185 * 109.12387 * 359.72447 * 5 4 3 7 7 C 1.36418 * 125.80324 * 89.99408 * 3 2 1 8 8 C 1.47382 * 127.19125 * 0.02562 * 7 3 2 9 9 O 1.21612 * 119.99860 * 359.71482 * 8 7 3 10 10 N 1.34774 * 120.00150 * 179.70762 * 8 7 3 11 11 C 1.46495 * 120.00132 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.47214 * 180.02562 * 11 10 8 13 13 H 1.09004 * 109.47087 * 65.00349 * 12 11 10 14 14 C 1.53007 * 109.47162 * 184.99866 * 12 11 10 15 15 N 1.46504 * 109.47517 * 305.00115 * 12 11 10 16 16 C 1.36930 * 119.99905 * 120.07845 * 15 12 11 17 17 H 1.08000 * 120.00201 * 213.26989 * 16 15 12 18 18 C 1.38811 * 120.00184 * 33.27930 * 16 15 12 19 19 N 1.31621 * 119.99967 * 17.26431 * 18 16 15 20 20 Si 1.86800 * 120.00193 * 197.26743 * 18 16 15 21 21 H 1.48503 * 109.47055 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47179 * 119.99590 * 20 18 16 23 23 H 1.48503 * 109.47333 * 239.99856 * 20 18 16 24 24 C 1.46495 * 119.99558 * 300.08369 * 15 12 11 25 25 C 1.53005 * 109.47003 * 95.73140 * 24 15 12 26 26 H 1.08998 * 109.47347 * 299.99953 * 1 2 3 27 27 H 1.08999 * 109.46769 * 60.00933 * 1 2 3 28 28 H 1.09005 * 109.46591 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47542 * 239.99561 * 2 1 3 30 30 H 1.09004 * 109.47388 * 119.99390 * 2 1 3 31 31 H 1.08000 * 125.43935 * 179.72666 * 5 4 3 32 32 H 1.07997 * 127.01977 * 179.97438 * 6 5 4 33 33 H 0.97001 * 120.00154 * 0.02562 * 10 8 7 34 34 H 1.09000 * 109.47351 * 299.99895 * 11 10 8 35 35 H 1.09003 * 109.47416 * 60.00026 * 11 10 8 36 36 H 1.08995 * 109.46621 * 60.00344 * 14 12 11 37 37 H 1.09001 * 109.46919 * 180.02562 * 14 12 11 38 38 H 1.09000 * 109.47291 * 299.99876 * 14 12 11 39 39 H 0.96998 * 119.99765 * 180.02562 * 19 18 16 40 40 H 1.09005 * 109.47241 * 215.72703 * 24 15 12 41 41 H 1.09002 * 109.47692 * 335.73148 * 24 15 12 42 42 H 1.08995 * 109.47114 * 59.99845 * 25 24 15 43 43 H 1.09004 * 109.47204 * 179.97438 * 25 24 15 44 44 H 1.08998 * 109.47140 * 299.99955 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2896 2.1592 -1.0840 5 6 2.7289 3.3795 -0.7391 6 6 2.7643 3.4720 0.5991 7 6 2.2982 2.1732 1.1064 8 6 2.1549 1.7667 2.5158 9 8 1.7554 0.6511 2.7892 10 7 2.4667 2.6312 3.5015 11 6 2.3248 2.2270 4.9024 12 6 2.7408 3.3847 5.8120 13 1 2.0490 4.2168 5.6805 14 6 2.7120 2.9232 7.2706 15 7 4.0965 3.8170 5.4633 16 6 4.3200 5.1033 5.0503 17 1 5.0902 5.3106 4.3222 18 6 3.5567 6.1409 5.5676 19 7 2.8688 5.9629 6.6756 20 14 3.5055 7.7898 4.6912 21 1 4.3584 7.7316 3.4769 22 1 2.1070 8.0986 4.2988 23 1 4.0100 8.8497 5.6008 24 6 5.2129 2.8730 5.5564 25 6 5.4690 2.2490 4.1830 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 3.0091 4.1622 -1.4285 32 1 3.0727 4.3260 1.1840 33 1 2.7852 3.5212 3.2835 34 1 1.2858 1.9644 5.1014 35 1 2.9614 1.3640 5.0979 36 1 3.4038 2.0912 7.4020 37 1 3.0080 3.7482 7.9186 38 1 1.7034 2.6017 7.5301 39 1 2.3352 6.6879 7.0368 40 1 6.1075 3.3999 5.8885 41 1 4.9667 2.0883 6.2717 42 1 5.7152 3.0337 3.4676 43 1 6.2999 1.5470 4.2521 44 1 4.5744 1.7222 3.8508 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153041706.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:52 Heat of formation + Delta-G solvation = -14.277348 kcal Electronic energy + Delta-G solvation = -25018.067013 eV Core-core repulsion = 21551.554550 eV Total energy + Delta-G solvation = -3466.512462 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.44602 -38.97877 -36.86951 -34.12313 -33.52238 -32.57779 -31.86090 -30.92303 -28.74559 -28.15726 -25.84682 -23.95136 -23.64986 -22.59581 -21.70676 -20.60174 -19.50680 -19.02418 -17.64445 -16.84663 -16.16476 -15.60221 -15.44245 -14.86557 -14.69512 -14.33495 -14.27621 -13.90852 -13.56132 -13.16979 -12.76047 -12.67565 -12.59161 -12.32194 -12.20581 -12.08281 -11.80854 -11.55807 -11.50525 -11.07184 -10.97602 -10.94784 -10.82726 -10.65422 -10.28693 -10.07712 -9.65990 -9.62484 -9.45607 -9.42449 -8.56907 -8.51945 -8.24972 -6.67227 -5.89322 -3.37702 1.55385 2.21773 2.89471 3.28640 3.38180 3.39067 3.77801 3.88508 4.40468 4.56281 4.95495 5.12025 5.15858 5.25706 5.26358 5.39917 5.44713 5.62298 5.78491 5.86873 5.94646 6.03941 6.07880 6.12650 6.21362 6.24306 6.28255 6.39982 6.44199 6.50820 6.56428 6.64179 6.70215 6.84395 6.92779 7.11037 7.15126 7.18607 7.48978 7.58165 7.76406 8.23437 8.42468 8.79979 9.15323 9.76952 10.34382 11.17277 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.015618 B = 0.005348 C = 0.004603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.397727 B = 5234.508628 C = 6081.855966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.048 4.048 3 C 0.066 3.934 4 O -0.180 6.180 5 C -0.048 4.048 6 C -0.181 4.181 7 C -0.232 4.232 8 C 0.579 3.421 9 O -0.561 6.561 10 N -0.692 5.692 11 C 0.103 3.897 12 C 0.176 3.824 13 H 0.099 0.901 14 C -0.144 4.144 15 N -0.582 5.582 16 C -0.261 4.261 17 H 0.064 0.936 18 C 0.011 3.989 19 N -0.890 5.890 20 Si 0.894 3.106 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.290 1.290 24 C 0.141 3.859 25 C -0.170 4.170 26 H 0.063 0.937 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.113 0.887 31 H 0.206 0.794 32 H 0.160 0.840 33 H 0.411 0.589 34 H 0.052 0.948 35 H 0.054 0.946 36 H 0.030 0.970 37 H 0.078 0.922 38 H 0.032 0.968 39 H 0.254 0.746 40 H 0.040 0.960 41 H 0.037 0.963 42 H 0.046 0.954 43 H 0.032 0.968 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.963 -7.173 -11.201 13.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.085 4.085 3 C 0.014 3.986 4 O -0.076 6.076 5 C -0.114 4.114 6 C -0.200 4.200 7 C -0.236 4.236 8 C 0.366 3.634 9 O -0.443 6.443 10 N -0.342 5.342 11 C -0.022 4.022 12 C 0.068 3.932 13 H 0.117 0.883 14 C -0.203 4.203 15 N -0.304 5.304 16 C -0.391 4.391 17 H 0.081 0.919 18 C -0.189 4.189 19 N -0.533 5.533 20 Si 0.724 3.276 21 H -0.202 1.202 22 H -0.215 1.215 23 H -0.217 1.217 24 C 0.014 3.986 25 C -0.230 4.230 26 H 0.083 0.917 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.132 0.868 31 H 0.222 0.778 32 H 0.178 0.822 33 H 0.248 0.752 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.049 0.951 37 H 0.097 0.903 38 H 0.052 0.948 39 H 0.064 0.936 40 H 0.058 0.942 41 H 0.055 0.945 42 H 0.065 0.935 43 H 0.051 0.949 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.362 -7.890 -11.152 13.864 hybrid contribution 0.284 1.735 -0.324 1.788 sum -2.078 -6.155 -11.476 13.187 Atomic orbital electron populations 1.21679 0.93611 1.02335 1.02340 1.20329 0.96804 0.86595 1.04768 1.22777 0.98286 0.94385 0.83192 1.83721 1.65498 1.23304 1.35084 1.23796 1.04887 0.86273 0.96426 1.23035 1.04333 0.98142 0.94515 1.21324 1.12364 0.95574 0.94350 1.17217 0.77716 0.84659 0.83774 1.90690 1.48622 1.20768 1.84217 1.45787 1.64930 1.17450 1.05985 1.22169 0.99604 0.99793 0.80674 1.20501 0.88456 0.93816 0.90381 0.88287 1.22017 0.98478 1.00666 0.99150 1.43877 1.00602 1.07978 1.77920 1.19116 1.19297 0.82715 1.17979 0.91862 1.25149 1.00966 0.97378 0.95371 1.70014 1.32802 1.32110 1.18358 0.86365 0.77444 0.84405 0.79382 1.20199 1.21546 1.21688 1.20755 0.91618 0.92560 0.93618 1.22447 0.99915 0.99724 1.00882 0.91745 0.92873 0.91605 0.90467 0.86846 0.77791 0.82235 0.75215 0.92937 0.92783 0.95139 0.90312 0.94845 0.93613 0.94152 0.94513 0.93513 0.94933 0.92906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.89 37.15 0.37 -1.24 16 2 C -0.05 -0.60 5.94 -27.89 -0.17 -0.76 16 3 C 0.07 0.97 6.63 -34.97 -0.23 0.74 16 4 O -0.18 -2.42 10.52 7.65 0.08 -2.34 16 5 C -0.05 -0.58 12.03 29.30 0.35 -0.23 16 6 C -0.18 -2.60 10.60 -37.45 -0.40 -3.00 16 7 C -0.23 -3.79 6.31 -103.27 -0.65 -4.45 16 8 C 0.58 10.76 7.58 -12.54 -0.10 10.66 16 9 O -0.56 -11.31 14.85 5.27 0.08 -11.23 16 10 N -0.69 -13.04 3.98 -61.40 -0.24 -13.28 16 11 C 0.10 2.01 4.33 -4.05 -0.02 1.99 16 12 C 0.18 3.77 1.92 -67.93 -0.13 3.64 16 13 H 0.10 2.42 6.04 -51.93 -0.31 2.11 16 14 C -0.14 -2.94 9.05 37.16 0.34 -2.61 16 15 N -0.58 -13.05 1.85 -165.65 -0.31 -13.35 16 16 C -0.26 -6.44 9.26 -15.06 -0.14 -6.58 16 17 H 0.06 1.57 7.89 -52.49 -0.41 1.16 16 18 C 0.01 0.29 4.85 -17.43 -0.08 0.21 16 19 N -0.89 -23.52 10.60 55.49 0.59 -22.93 16 20 Si 0.89 20.11 29.59 -169.99 -5.03 15.08 16 21 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 22 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 23 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 24 C 0.14 2.86 5.67 -4.04 -0.02 2.84 16 25 C -0.17 -3.14 9.87 37.16 0.37 -2.77 16 26 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.11 1.58 6.49 -51.93 -0.34 1.25 16 31 H 0.21 1.61 8.06 -52.49 -0.42 1.19 16 32 H 0.16 2.22 7.74 -52.49 -0.41 1.81 16 33 H 0.41 7.95 7.07 -40.82 -0.29 7.66 16 34 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.05 1.07 7.06 -51.93 -0.37 0.71 16 36 H 0.03 0.58 6.67 -51.93 -0.35 0.23 16 37 H 0.08 1.83 7.39 -51.93 -0.38 1.44 16 38 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.25 6.59 8.31 -40.82 -0.34 6.25 16 40 H 0.04 0.85 8.09 -51.93 -0.42 0.43 16 41 H 0.04 0.72 6.45 -51.93 -0.33 0.39 16 42 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.05 1.01 4.99 -51.93 -0.26 0.75 16 LS Contribution 354.02 15.07 5.33 5.33 Total: -1.00 -27.82 354.02 -6.82 -34.64 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -6.81 Total: 9.65 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: -0.51 Total: -1.55 kcal Atomic # 7 Polarization: -49.61 SS G_CDS: 0.04 Total: -49.57 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: 0.16 Total: -13.57 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.03 Total: 15.08 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -27.82 -6.82 -34.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153041706.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.359 kcal (2) G-P(sol) polarization free energy of solvation -27.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds