Wall clock time and date at job start Tue Mar 31 2020 06:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50697 * 109.47308 * 2 1 4 4 O 1.33657 * 125.80500 * 270.19012 * 3 2 1 5 5 C 1.34211 * 110.91195 * 180.28191 * 4 3 2 6 6 C 1.34185 * 109.12387 * 359.72447 * 5 4 3 7 7 C 1.36418 * 125.80324 * 89.99408 * 3 2 1 8 8 C 1.47382 * 127.19125 * 0.02562 * 7 3 2 9 9 O 1.21612 * 119.99860 * 359.71482 * 8 7 3 10 10 N 1.34774 * 120.00150 * 179.70762 * 8 7 3 11 11 C 1.46495 * 120.00132 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.47214 * 180.02562 * 11 10 8 13 13 H 1.09004 * 109.47087 * 65.00349 * 12 11 10 14 14 C 1.53007 * 109.47162 * 184.99866 * 12 11 10 15 15 N 1.46504 * 109.47517 * 305.00115 * 12 11 10 16 16 C 1.36930 * 119.99905 * 120.07845 * 15 12 11 17 17 H 1.08000 * 120.00201 * 213.26989 * 16 15 12 18 18 C 1.38811 * 120.00184 * 33.27930 * 16 15 12 19 19 N 1.31621 * 119.99967 * 17.26431 * 18 16 15 20 20 Si 1.86800 * 120.00193 * 197.26743 * 18 16 15 21 21 H 1.48503 * 109.47055 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47179 * 119.99590 * 20 18 16 23 23 H 1.48503 * 109.47333 * 239.99856 * 20 18 16 24 24 C 1.46495 * 119.99558 * 300.08369 * 15 12 11 25 25 C 1.53005 * 109.47003 * 95.73140 * 24 15 12 26 26 H 1.08998 * 109.47347 * 299.99953 * 1 2 3 27 27 H 1.08999 * 109.46769 * 60.00933 * 1 2 3 28 28 H 1.09005 * 109.46591 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47542 * 239.99561 * 2 1 3 30 30 H 1.09004 * 109.47388 * 119.99390 * 2 1 3 31 31 H 1.08000 * 125.43935 * 179.72666 * 5 4 3 32 32 H 1.07997 * 127.01977 * 179.97438 * 6 5 4 33 33 H 0.97001 * 120.00154 * 0.02562 * 10 8 7 34 34 H 1.09000 * 109.47351 * 299.99895 * 11 10 8 35 35 H 1.09003 * 109.47416 * 60.00026 * 11 10 8 36 36 H 1.08995 * 109.46621 * 60.00344 * 14 12 11 37 37 H 1.09001 * 109.46919 * 180.02562 * 14 12 11 38 38 H 1.09000 * 109.47291 * 299.99876 * 14 12 11 39 39 H 0.96998 * 119.99765 * 180.02562 * 19 18 16 40 40 H 1.09005 * 109.47241 * 215.72703 * 24 15 12 41 41 H 1.09002 * 109.47692 * 335.73148 * 24 15 12 42 42 H 1.08995 * 109.47114 * 59.99845 * 25 24 15 43 43 H 1.09004 * 109.47204 * 179.97438 * 25 24 15 44 44 H 1.08998 * 109.47140 * 299.99955 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2896 2.1592 -1.0840 5 6 2.7289 3.3795 -0.7391 6 6 2.7643 3.4720 0.5991 7 6 2.2982 2.1732 1.1064 8 6 2.1549 1.7667 2.5158 9 8 1.7554 0.6511 2.7892 10 7 2.4667 2.6312 3.5015 11 6 2.3248 2.2270 4.9024 12 6 2.7408 3.3847 5.8120 13 1 2.0490 4.2168 5.6805 14 6 2.7120 2.9232 7.2706 15 7 4.0965 3.8170 5.4633 16 6 4.3200 5.1033 5.0503 17 1 5.0902 5.3106 4.3222 18 6 3.5567 6.1409 5.5676 19 7 2.8688 5.9629 6.6756 20 14 3.5055 7.7898 4.6912 21 1 4.3584 7.7316 3.4769 22 1 2.1070 8.0986 4.2988 23 1 4.0100 8.8497 5.6008 24 6 5.2129 2.8730 5.5564 25 6 5.4690 2.2490 4.1830 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 3.0091 4.1622 -1.4285 32 1 3.0727 4.3260 1.1840 33 1 2.7852 3.5212 3.2835 34 1 1.2858 1.9644 5.1014 35 1 2.9614 1.3640 5.0979 36 1 3.4038 2.0912 7.4020 37 1 3.0080 3.7482 7.9186 38 1 1.7034 2.6017 7.5301 39 1 2.3352 6.6879 7.0368 40 1 6.1075 3.3999 5.8885 41 1 4.9667 2.0883 6.2717 42 1 5.7152 3.0337 3.4676 43 1 6.2999 1.5470 4.2521 44 1 4.5744 1.7222 3.8508 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001153041706.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:51 Heat of formation + Delta-G solvation = -28.800832 kcal Electronic energy + Delta-G solvation = -25018.696798 eV Core-core repulsion = 21551.554550 eV Total energy + Delta-G solvation = -3467.142248 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.52450 -40.47286 -38.55278 -35.39154 -34.83965 -33.86894 -33.59161 -32.52108 -29.97518 -29.74590 -27.34929 -25.79323 -24.76875 -23.77821 -23.31455 -21.79796 -21.08766 -20.47562 -18.93764 -18.51438 -17.27932 -17.05470 -16.85188 -16.44141 -16.35556 -15.65266 -15.48915 -15.25945 -15.15328 -14.45073 -14.33271 -14.04803 -13.87616 -13.74026 -13.58294 -13.45270 -13.25454 -13.16995 -12.82527 -12.70314 -12.56150 -12.51223 -12.33873 -12.02373 -11.93994 -11.85722 -11.36326 -11.16749 -10.91762 -10.81056 -10.43741 -9.91304 -9.50181 -8.52536 -7.81608 -5.31580 0.37829 1.14629 1.48009 1.53411 1.60389 1.85760 2.40224 2.46574 2.55252 3.32935 3.58604 3.65397 3.88305 3.92667 4.17665 4.25927 4.32611 4.45346 4.48409 4.56529 4.62828 4.69237 4.77180 4.81052 4.88939 4.93518 4.96087 4.98343 5.05041 5.06469 5.13910 5.21768 5.30269 5.31772 5.38472 5.54603 5.60409 5.69965 5.76990 5.88207 6.06572 6.50604 6.74049 7.24299 7.32820 7.93104 8.45869 9.22530 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.015618 B = 0.005348 C = 0.004603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.397727 B = 5234.508628 C = 6081.855966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.049 4.049 3 C 0.071 3.929 4 O -0.176 6.176 5 C -0.025 4.025 6 C -0.206 4.206 7 C -0.265 4.265 8 C 0.578 3.422 9 O -0.582 6.582 10 N -0.693 5.693 11 C 0.117 3.883 12 C 0.182 3.818 13 H 0.069 0.931 14 C -0.134 4.134 15 N -0.590 5.590 16 C -0.259 4.259 17 H 0.061 0.939 18 C -0.032 4.032 19 N -0.915 5.915 20 Si 0.950 3.050 21 H -0.265 1.265 22 H -0.293 1.293 23 H -0.300 1.300 24 C 0.140 3.860 25 C -0.155 4.155 26 H 0.037 0.963 27 H 0.064 0.936 28 H 0.085 0.915 29 H 0.106 0.894 30 H 0.095 0.905 31 H 0.250 0.750 32 H 0.158 0.842 33 H 0.408 0.592 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.043 0.957 37 H 0.048 0.952 38 H 0.049 0.951 39 H 0.248 0.752 40 H 0.032 0.968 41 H 0.044 0.956 42 H 0.038 0.962 43 H 0.054 0.946 44 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.610 -7.690 -13.472 15.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.086 4.086 3 C 0.017 3.983 4 O -0.072 6.072 5 C -0.090 4.090 6 C -0.226 4.226 7 C -0.269 4.269 8 C 0.367 3.633 9 O -0.466 6.466 10 N -0.342 5.342 11 C -0.009 4.009 12 C 0.075 3.925 13 H 0.087 0.913 14 C -0.194 4.194 15 N -0.312 5.312 16 C -0.389 4.389 17 H 0.078 0.922 18 C -0.229 4.229 19 N -0.559 5.559 20 Si 0.780 3.220 21 H -0.190 1.190 22 H -0.220 1.220 23 H -0.227 1.227 24 C 0.014 3.986 25 C -0.214 4.214 26 H 0.056 0.944 27 H 0.083 0.917 28 H 0.104 0.896 29 H 0.124 0.876 30 H 0.113 0.887 31 H 0.266 0.734 32 H 0.176 0.824 33 H 0.245 0.755 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.057 0.943 40 H 0.050 0.950 41 H 0.063 0.937 42 H 0.057 0.943 43 H 0.073 0.927 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -1.994 -8.422 -13.443 15.988 hybrid contribution 0.204 1.861 0.351 1.904 sum -1.789 -6.561 -13.092 14.753 Atomic orbital electron populations 1.21646 0.92768 1.03476 1.01552 1.20403 0.97431 0.85531 1.05225 1.23105 0.97150 0.95040 0.82967 1.83764 1.65190 1.23763 1.34466 1.24579 1.02026 0.86103 0.96279 1.23109 1.06104 0.97627 0.95715 1.21303 1.14792 0.97341 0.93483 1.17532 0.76917 0.84175 0.84669 1.90667 1.49581 1.21545 1.84770 1.45744 1.65277 1.17399 1.05787 1.21903 0.99440 0.98622 0.80910 1.20347 0.87479 0.93349 0.91340 0.91312 1.21877 0.99772 0.99844 0.97877 1.43989 1.01490 1.07781 1.77972 1.19262 1.18699 0.83669 1.17318 0.92167 1.25708 1.01292 0.99940 0.95978 1.70145 1.33707 1.32518 1.19551 0.85478 0.77031 0.80919 0.78588 1.18958 1.22030 1.22740 1.20826 0.90553 0.92263 0.94945 1.22255 1.00352 0.99617 0.99189 0.94410 0.91657 0.89570 0.87601 0.88705 0.73411 0.82396 0.75544 0.92869 0.92906 0.93839 0.93266 0.93186 0.94287 0.94971 0.93725 0.94270 0.92678 0.93704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 9.89 71.98 0.71 -2.17 16 2 C -0.05 -1.14 5.94 29.85 0.18 -0.96 16 3 C 0.07 1.96 6.63 25.26 0.17 2.12 16 4 O -0.18 -4.24 10.52 4.47 0.05 -4.20 16 5 C -0.02 -0.52 12.03 66.89 0.80 0.28 16 6 C -0.21 -5.66 10.60 23.65 0.25 -5.41 16 7 C -0.26 -8.52 6.31 -18.99 -0.12 -8.64 16 8 C 0.58 21.58 7.58 86.65 0.66 22.24 16 9 O -0.58 -23.65 14.85 -4.07 -0.06 -23.71 16 10 N -0.69 -26.33 3.98 -466.42 -1.86 -28.18 16 11 C 0.12 4.57 4.33 86.38 0.37 4.95 16 12 C 0.18 7.90 1.92 44.99 0.09 7.99 16 13 H 0.07 3.45 6.04 -2.38 -0.01 3.43 16 14 C -0.13 -5.51 9.05 71.98 0.65 -4.86 16 15 N -0.59 -26.55 1.85 -678.01 -1.25 -27.80 16 16 C -0.26 -12.81 9.26 84.03 0.78 -12.03 16 17 H 0.06 2.98 7.89 -2.91 -0.02 2.96 16 18 C -0.03 -1.62 4.85 84.86 0.41 -1.21 16 19 N -0.91 -49.34 10.60 21.65 0.23 -49.11 16 20 Si 0.95 41.66 29.59 68.60 2.03 43.69 16 21 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 22 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 23 H -0.30 -13.56 7.11 99.48 0.71 -12.85 16 24 C 0.14 5.59 5.67 86.38 0.49 6.08 16 25 C -0.15 -5.52 9.87 71.98 0.71 -4.81 16 26 H 0.04 0.98 8.14 -2.39 -0.02 0.97 16 27 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 29 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.09 2.60 6.49 -2.38 -0.02 2.58 16 31 H 0.25 2.77 8.06 -2.91 -0.02 2.75 16 32 H 0.16 4.29 7.74 -2.91 -0.02 4.27 16 33 H 0.41 15.99 7.07 -92.71 -0.66 15.34 16 34 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.05 2.08 7.06 -2.39 -0.02 2.06 16 36 H 0.04 1.63 6.67 -2.39 -0.02 1.61 16 37 H 0.05 2.31 7.39 -2.39 -0.02 2.29 16 38 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.25 13.19 8.31 -92.71 -0.77 12.42 16 40 H 0.03 1.33 8.09 -2.38 -0.02 1.31 16 41 H 0.04 1.70 6.45 -2.39 -0.02 1.69 16 42 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.04 1.67 4.99 -2.39 -0.01 1.66 16 Total: -1.00 -60.10 354.02 5.63 -54.47 By element: Atomic # 1 Polarization: 30.95 SS G_CDS: 0.34 Total: 31.29 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: 6.15 Total: 3.56 kcal Atomic # 7 Polarization: -102.22 SS G_CDS: -2.88 Total: -105.10 kcal Atomic # 8 Polarization: -27.89 SS G_CDS: -0.01 Total: -27.91 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Total: -60.10 5.63 -54.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153041706.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.667 kcal (2) G-P(sol) polarization free energy of solvation -60.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds