Wall clock time and date at job start Tue Mar 31 2020 06:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47016 * 2 1 4 4 C 1.35135 * 125.61816 * 89.99883 * 3 2 1 5 5 C 1.40368 * 107.11120 * 180.02562 * 4 3 2 6 6 C 1.36536 * 106.71069 * 0.02562 * 5 4 3 7 7 C 1.46659 * 125.98577 * 179.97438 * 6 5 4 8 8 O 1.21694 * 120.00496 * 359.97438 * 7 6 5 9 9 N 1.34782 * 120.00005 * 180.02562 * 7 6 5 10 10 C 1.46503 * 119.99824 * 180.02562 * 9 7 6 11 11 C 1.53004 * 109.46678 * 180.02562 * 10 9 7 12 12 H 1.08994 * 109.47286 * 64.99856 * 11 10 9 13 13 C 1.52996 * 109.46912 * 184.99879 * 11 10 9 14 14 N 1.46502 * 109.47237 * 304.99956 * 11 10 9 15 15 C 1.36929 * 120.00139 * 120.08377 * 14 11 10 16 16 H 1.08009 * 120.00102 * 213.26729 * 15 14 11 17 17 C 1.38813 * 120.00060 * 33.27541 * 15 14 11 18 18 N 1.31617 * 119.99945 * 17.26342 * 17 15 14 19 19 Si 1.86795 * 119.99994 * 197.26974 * 17 15 14 20 20 H 1.48498 * 109.47296 * 359.97438 * 19 17 15 21 21 H 1.48506 * 109.47417 * 119.99615 * 19 17 15 22 22 H 1.48500 * 109.47399 * 239.99698 * 19 17 15 23 23 C 1.46501 * 119.99762 * 300.08630 * 14 11 10 24 24 C 1.53004 * 109.47316 * 95.73225 * 23 14 11 25 25 O 1.33931 * 125.61316 * 270.02106 * 3 2 1 26 26 H 1.09002 * 109.47308 * 60.00034 * 1 2 3 27 27 H 1.09002 * 109.47166 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47159 * 300.00093 * 1 2 3 29 29 H 1.09001 * 109.47159 * 239.99907 * 2 1 3 30 30 H 1.09002 * 109.47308 * 119.99966 * 2 1 3 31 31 H 1.07997 * 126.44268 * 0.02687 * 4 3 2 32 32 H 1.08004 * 126.64109 * 179.74164 * 5 4 3 33 33 H 0.97002 * 119.99639 * 359.97438 * 9 7 6 34 34 H 1.08998 * 109.46842 * 299.99230 * 10 9 7 35 35 H 1.08994 * 109.47074 * 60.00008 * 10 9 7 36 36 H 1.09006 * 109.47381 * 60.00164 * 13 11 10 37 37 H 1.08997 * 109.47349 * 179.97438 * 13 11 10 38 38 H 1.09001 * 109.47673 * 299.99831 * 13 11 10 39 39 H 0.96995 * 119.99892 * 180.02562 * 18 17 15 40 40 H 1.09000 * 109.47057 * 215.73336 * 23 14 11 41 41 H 1.08999 * 109.47472 * 335.73199 * 23 14 11 42 42 H 1.09000 * 109.47148 * 300.00055 * 24 23 14 43 43 H 1.09001 * 109.47098 * 60.00098 * 24 23 14 44 44 H 1.09001 * 109.47171 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2946 2.1628 1.0985 5 6 2.7377 3.4180 0.6530 6 6 2.7226 3.3779 -0.7117 7 6 3.1076 4.4712 -1.6102 8 8 3.4823 5.5337 -1.1502 9 7 3.0456 4.2996 -2.9456 10 6 3.4307 5.3915 -3.8432 11 6 3.2685 4.9390 -5.2957 12 1 2.2147 4.7534 -5.5029 13 6 3.7875 6.0324 -6.2315 14 7 4.0328 3.7079 -5.5119 15 6 3.3928 2.5667 -5.9156 16 1 3.7486 1.6021 -5.5847 17 6 2.2867 2.6494 -6.7503 18 7 2.0517 3.7556 -7.4236 19 14 1.1318 1.1909 -6.9177 20 1 1.6144 0.0766 -6.0630 21 1 -0.2333 1.5886 -6.4892 22 1 1.0963 0.7476 -8.3346 23 6 5.4818 3.6979 -5.2961 24 6 5.7840 3.1859 -3.8863 25 8 2.2918 2.1562 -1.0888 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.1841 1.8491 2.1260 32 1 3.0293 4.2549 1.2702 33 1 2.7466 3.4528 -3.3124 34 1 2.7924 6.2556 -3.6588 35 1 4.4706 5.6623 -3.6605 36 1 4.8415 6.2180 -6.0243 37 1 3.6724 5.7099 -7.2663 38 1 3.2189 6.9484 -6.0707 39 1 1.2787 3.8136 -8.0065 40 1 5.9537 3.0437 -6.0292 41 1 5.8727 4.7093 -5.4069 42 1 5.3120 3.8401 -3.1533 43 1 5.3932 2.1745 -3.7755 44 1 6.8621 3.1781 -3.7260 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154049819.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:55 Heat of formation + Delta-G solvation = -13.414919 kcal Electronic energy + Delta-G solvation = -24859.667806 eV Core-core repulsion = 21393.192741 eV Total energy + Delta-G solvation = -3466.475065 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.58480 -39.08913 -36.90993 -34.36218 -33.73556 -32.73170 -31.88016 -31.13679 -28.99497 -28.14115 -25.78994 -24.00352 -23.88177 -21.99329 -21.59766 -21.12786 -19.83711 -19.29990 -17.90381 -16.85807 -16.30387 -15.62002 -15.55663 -14.86117 -14.70229 -14.48001 -14.01116 -13.84416 -13.39232 -13.18525 -12.87493 -12.84273 -12.69757 -12.50050 -12.32434 -12.11927 -11.84493 -11.73021 -11.51880 -11.20826 -11.07246 -10.95049 -10.82264 -10.71527 -10.28139 -10.09842 -9.93454 -9.81412 -9.64789 -9.44275 -8.65220 -8.51336 -8.27115 -6.67790 -5.88813 -3.37186 1.24415 2.40900 2.77271 3.30269 3.40002 3.41041 3.52952 3.70850 4.41850 4.55135 4.87233 4.96558 5.05125 5.20664 5.26442 5.28822 5.39033 5.59396 5.66447 5.74785 5.85184 5.92247 5.95725 6.05471 6.06545 6.16508 6.24858 6.37373 6.44368 6.46863 6.54135 6.60339 6.67686 6.82694 6.91423 6.92066 7.06613 7.17059 7.47032 7.56621 7.77661 8.06397 8.42571 8.56695 9.15562 9.76899 10.33843 11.17917 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.012499 B = 0.006077 C = 0.004646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.613320 B = 4606.582837 C = 6025.123375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.048 4.048 3 C 0.016 3.984 4 C -0.224 4.224 5 C -0.131 4.131 6 C -0.065 4.065 7 C 0.590 3.410 8 O -0.541 6.541 9 N -0.686 5.686 10 C 0.099 3.901 11 C 0.176 3.824 12 H 0.101 0.899 13 C -0.144 4.144 14 N -0.583 5.583 15 C -0.261 4.261 16 H 0.064 0.936 17 C 0.011 3.989 18 N -0.891 5.891 19 Si 0.895 3.105 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.290 1.290 23 C 0.141 3.859 24 C -0.170 4.170 25 O -0.153 6.153 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.059 0.941 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.152 0.848 32 H 0.157 0.843 33 H 0.416 0.584 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.030 0.970 37 H 0.079 0.921 38 H 0.033 0.967 39 H 0.254 0.746 40 H 0.041 0.959 41 H 0.037 0.963 42 H 0.050 0.950 43 H 0.046 0.954 44 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.828 -4.091 12.925 13.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.085 4.085 3 C -0.036 4.036 4 C -0.243 4.243 5 C -0.152 4.152 6 C -0.118 4.118 7 C 0.376 3.624 8 O -0.422 6.422 9 N -0.336 5.336 10 C -0.026 4.026 11 C 0.068 3.932 12 H 0.118 0.882 13 C -0.203 4.203 14 N -0.304 5.304 15 C -0.390 4.390 16 H 0.082 0.918 17 C -0.189 4.189 18 N -0.534 5.534 19 Si 0.725 3.275 20 H -0.201 1.201 21 H -0.215 1.215 22 H -0.217 1.217 23 C 0.014 3.986 24 C -0.230 4.230 25 O -0.048 6.048 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.105 0.895 30 H 0.113 0.887 31 H 0.169 0.831 32 H 0.174 0.826 33 H 0.254 0.746 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.049 0.951 37 H 0.098 0.902 38 H 0.052 0.948 39 H 0.064 0.936 40 H 0.060 0.940 41 H 0.056 0.944 42 H 0.069 0.931 43 H 0.065 0.935 44 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -0.723 -3.393 12.733 13.197 hybrid contribution -0.710 -1.050 -0.105 1.272 sum -1.433 -4.443 12.628 13.463 Atomic orbital electron populations 1.21796 0.93699 1.02461 1.02887 1.20178 0.96578 0.87292 1.04466 1.22793 1.01505 0.95103 0.84237 1.21496 1.08852 0.94459 0.99461 1.21856 1.01546 0.98752 0.92999 1.22298 1.09331 0.85445 0.94715 1.16635 0.78768 0.84882 0.82147 1.90824 1.49394 1.25430 1.76524 1.45956 1.64308 1.18892 1.04408 1.22292 0.99325 0.88343 0.92623 1.20510 0.99291 0.86304 0.87085 0.88167 1.22015 0.98136 0.97202 1.02929 1.43894 1.00698 1.07990 1.77849 1.19125 1.10281 0.86267 1.23350 0.91832 1.25146 1.01105 0.96857 0.95773 1.70010 1.28510 1.26864 1.27997 0.86347 0.81053 0.82595 0.77526 1.20148 1.21533 1.21705 1.20761 0.86280 0.97894 0.93636 1.22453 0.98520 1.01481 1.00565 1.84094 1.64088 1.21991 1.34674 0.91911 0.91506 0.92185 0.89517 0.88705 0.83052 0.82553 0.74610 0.92511 0.92408 0.95089 0.90223 0.94769 0.93609 0.94046 0.94438 0.93131 0.93458 0.94793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.89 37.16 0.37 -0.95 16 2 C -0.05 -0.46 6.47 -27.89 -0.18 -0.64 16 3 C 0.02 0.22 6.57 -35.41 -0.23 -0.02 16 4 C -0.22 -2.77 10.77 -39.88 -0.43 -3.20 16 5 C -0.13 -1.93 10.62 -39.40 -0.42 -2.34 16 6 C -0.07 -1.12 7.13 -36.80 -0.26 -1.38 16 7 C 0.59 11.33 7.55 -12.86 -0.10 11.23 16 8 O -0.54 -11.43 16.86 5.19 0.09 -11.34 16 9 N -0.69 -13.30 3.98 -61.62 -0.25 -13.54 16 10 C 0.10 1.94 4.33 -4.04 -0.02 1.93 16 11 C 0.18 3.79 1.92 -67.93 -0.13 3.66 16 12 H 0.10 2.46 6.04 -51.93 -0.31 2.15 16 13 C -0.14 -2.93 9.05 37.16 0.34 -2.59 16 14 N -0.58 -13.24 1.85 -165.66 -0.31 -13.55 16 15 C -0.26 -6.55 9.26 -15.06 -0.14 -6.68 16 16 H 0.06 1.62 7.89 -52.48 -0.41 1.21 16 17 C 0.01 0.29 4.85 -17.43 -0.08 0.20 16 18 N -0.89 -23.75 10.60 55.49 0.59 -23.16 16 19 Si 0.90 20.50 29.59 -169.99 -5.03 15.47 16 20 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 23 C 0.14 2.88 5.67 -4.04 -0.02 2.85 16 24 C -0.17 -3.19 9.87 37.16 0.37 -2.82 16 25 O -0.15 -2.52 10.40 4.99 0.05 -2.47 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.15 1.40 8.06 -52.49 -0.42 0.98 16 32 H 0.16 2.10 8.06 -52.48 -0.42 1.68 16 33 H 0.42 8.45 7.65 -40.82 -0.31 8.14 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.06 1.14 7.05 -51.93 -0.37 0.78 16 36 H 0.03 0.58 6.67 -51.93 -0.35 0.24 16 37 H 0.08 1.85 7.40 -51.93 -0.38 1.46 16 38 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.25 6.64 8.31 -40.82 -0.34 6.30 16 40 H 0.04 0.87 8.09 -51.93 -0.42 0.45 16 41 H 0.04 0.73 6.45 -51.93 -0.33 0.40 16 42 H 0.05 0.98 4.99 -51.93 -0.26 0.72 16 43 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 44 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 358.49 15.07 5.40 5.40 Total: -1.00 -28.15 358.49 -7.33 -35.48 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -6.94 Total: 8.47 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: -0.94 Total: -0.76 kcal Atomic # 7 Polarization: -50.29 SS G_CDS: 0.04 Total: -50.25 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: 0.14 Total: -13.81 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.03 Total: 15.47 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -28.15 -7.33 -35.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154049819.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.061 kcal (2) G-P(sol) polarization free energy of solvation -28.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds