Wall clock time and date at job start Tue Mar 31 2020 06:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47016 * 2 1 4 4 C 1.35135 * 125.61816 * 89.99883 * 3 2 1 5 5 C 1.40368 * 107.11120 * 180.02562 * 4 3 2 6 6 C 1.36536 * 106.71069 * 0.02562 * 5 4 3 7 7 C 1.46659 * 125.98577 * 179.97438 * 6 5 4 8 8 O 1.21694 * 120.00496 * 359.97438 * 7 6 5 9 9 N 1.34782 * 120.00005 * 180.02562 * 7 6 5 10 10 C 1.46503 * 119.99824 * 180.02562 * 9 7 6 11 11 C 1.53004 * 109.46678 * 180.02562 * 10 9 7 12 12 H 1.08994 * 109.47286 * 64.99856 * 11 10 9 13 13 C 1.52996 * 109.46912 * 184.99879 * 11 10 9 14 14 N 1.46502 * 109.47237 * 304.99956 * 11 10 9 15 15 C 1.36929 * 120.00139 * 120.08377 * 14 11 10 16 16 H 1.08009 * 120.00102 * 213.26729 * 15 14 11 17 17 C 1.38813 * 120.00060 * 33.27541 * 15 14 11 18 18 N 1.31617 * 119.99945 * 17.26342 * 17 15 14 19 19 Si 1.86795 * 119.99994 * 197.26974 * 17 15 14 20 20 H 1.48498 * 109.47296 * 359.97438 * 19 17 15 21 21 H 1.48506 * 109.47417 * 119.99615 * 19 17 15 22 22 H 1.48500 * 109.47399 * 239.99698 * 19 17 15 23 23 C 1.46501 * 119.99762 * 300.08630 * 14 11 10 24 24 C 1.53004 * 109.47316 * 95.73225 * 23 14 11 25 25 O 1.33931 * 125.61316 * 270.02106 * 3 2 1 26 26 H 1.09002 * 109.47308 * 60.00034 * 1 2 3 27 27 H 1.09002 * 109.47166 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47159 * 300.00093 * 1 2 3 29 29 H 1.09001 * 109.47159 * 239.99907 * 2 1 3 30 30 H 1.09002 * 109.47308 * 119.99966 * 2 1 3 31 31 H 1.07997 * 126.44268 * 0.02687 * 4 3 2 32 32 H 1.08004 * 126.64109 * 179.74164 * 5 4 3 33 33 H 0.97002 * 119.99639 * 359.97438 * 9 7 6 34 34 H 1.08998 * 109.46842 * 299.99230 * 10 9 7 35 35 H 1.08994 * 109.47074 * 60.00008 * 10 9 7 36 36 H 1.09006 * 109.47381 * 60.00164 * 13 11 10 37 37 H 1.08997 * 109.47349 * 179.97438 * 13 11 10 38 38 H 1.09001 * 109.47673 * 299.99831 * 13 11 10 39 39 H 0.96995 * 119.99892 * 180.02562 * 18 17 15 40 40 H 1.09000 * 109.47057 * 215.73336 * 23 14 11 41 41 H 1.08999 * 109.47472 * 335.73199 * 23 14 11 42 42 H 1.09000 * 109.47148 * 300.00055 * 24 23 14 43 43 H 1.09001 * 109.47098 * 60.00098 * 24 23 14 44 44 H 1.09001 * 109.47171 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2946 2.1628 1.0985 5 6 2.7377 3.4180 0.6530 6 6 2.7226 3.3779 -0.7117 7 6 3.1076 4.4712 -1.6102 8 8 3.4823 5.5337 -1.1502 9 7 3.0456 4.2996 -2.9456 10 6 3.4307 5.3915 -3.8432 11 6 3.2685 4.9390 -5.2957 12 1 2.2147 4.7534 -5.5029 13 6 3.7875 6.0324 -6.2315 14 7 4.0328 3.7079 -5.5119 15 6 3.3928 2.5667 -5.9156 16 1 3.7486 1.6021 -5.5847 17 6 2.2867 2.6494 -6.7503 18 7 2.0517 3.7556 -7.4236 19 14 1.1318 1.1909 -6.9177 20 1 1.6144 0.0766 -6.0630 21 1 -0.2333 1.5886 -6.4892 22 1 1.0963 0.7476 -8.3346 23 6 5.4818 3.6979 -5.2961 24 6 5.7840 3.1859 -3.8863 25 8 2.2918 2.1562 -1.0888 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.1841 1.8491 2.1260 32 1 3.0293 4.2549 1.2702 33 1 2.7466 3.4528 -3.3124 34 1 2.7924 6.2556 -3.6588 35 1 4.4706 5.6623 -3.6605 36 1 4.8415 6.2180 -6.0243 37 1 3.6724 5.7099 -7.2663 38 1 3.2189 6.9484 -6.0707 39 1 1.2787 3.8136 -8.0065 40 1 5.9537 3.0437 -6.0292 41 1 5.8727 4.7093 -5.4069 42 1 5.3120 3.8401 -3.1533 43 1 5.3932 2.1745 -3.7755 44 1 6.8621 3.1781 -3.7260 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154049819.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:55 Heat of formation + Delta-G solvation = -28.321047 kcal Electronic energy + Delta-G solvation = -24860.314184 eV Core-core repulsion = 21393.192741 eV Total energy + Delta-G solvation = -3467.121443 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.71476 -40.61504 -38.61872 -35.48026 -35.07792 -33.85386 -33.73792 -32.78057 -30.21713 -29.83194 -27.21579 -25.81798 -24.97288 -23.44591 -22.94569 -22.26148 -21.13045 -20.98551 -19.35705 -18.60469 -17.50181 -17.17206 -16.83417 -16.48989 -16.34250 -15.62248 -15.48260 -15.21299 -14.94670 -14.36021 -14.14309 -14.03083 -14.00862 -13.90347 -13.78598 -13.53134 -13.27087 -13.20492 -12.84452 -12.72376 -12.58525 -12.50053 -12.41185 -12.04995 -11.93387 -11.90494 -11.39737 -11.34503 -11.19015 -11.02770 -10.46231 -10.12677 -9.46546 -8.55226 -7.84271 -5.34024 0.02158 1.35894 1.45440 1.50572 1.58047 1.65003 2.13399 2.31003 2.52635 3.30078 3.55110 3.63797 3.89768 3.96140 4.19179 4.25615 4.32981 4.42486 4.50720 4.52759 4.60301 4.64766 4.78624 4.82770 4.84949 4.91554 4.94249 4.96349 5.00497 5.03830 5.05764 5.20050 5.29136 5.31965 5.37619 5.47444 5.55312 5.67313 5.73385 5.84612 5.93909 6.47849 6.54969 7.04613 7.22680 7.90596 8.42530 9.19782 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.012499 B = 0.006077 C = 0.004646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.613320 B = 4606.582837 C = 6025.123375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.049 4.049 3 C 0.018 3.982 4 C -0.218 4.218 5 C -0.119 4.119 6 C -0.108 4.108 7 C 0.592 3.408 8 O -0.568 6.568 9 N -0.689 5.689 10 C 0.111 3.889 11 C 0.181 3.819 12 H 0.069 0.931 13 C -0.134 4.134 14 N -0.592 5.592 15 C -0.260 4.260 16 H 0.057 0.943 17 C -0.031 4.031 18 N -0.913 5.913 19 Si 0.949 3.051 20 H -0.269 1.269 21 H -0.293 1.293 22 H -0.296 1.296 23 C 0.140 3.860 24 C -0.156 4.156 25 O -0.176 6.176 26 H 0.038 0.962 27 H 0.087 0.913 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.129 0.871 31 H 0.190 0.810 32 H 0.167 0.833 33 H 0.411 0.589 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.044 0.956 37 H 0.049 0.951 38 H 0.051 0.949 39 H 0.249 0.751 40 H 0.033 0.967 41 H 0.048 0.952 42 H 0.042 0.958 43 H 0.035 0.965 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.711 -5.377 15.126 16.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.085 4.085 3 C -0.035 4.035 4 C -0.237 4.237 5 C -0.140 4.140 6 C -0.160 4.160 7 C 0.380 3.620 8 O -0.451 6.451 9 N -0.337 5.337 10 C -0.014 4.014 11 C 0.074 3.926 12 H 0.087 0.913 13 C -0.193 4.193 14 N -0.314 5.314 15 C -0.390 4.390 16 H 0.075 0.925 17 C -0.229 4.229 18 N -0.557 5.557 19 Si 0.778 3.222 20 H -0.193 1.193 21 H -0.220 1.220 22 H -0.223 1.223 23 C 0.014 3.986 24 C -0.215 4.215 25 O -0.073 6.073 26 H 0.058 0.942 27 H 0.106 0.894 28 H 0.087 0.913 29 H 0.101 0.899 30 H 0.147 0.853 31 H 0.207 0.793 32 H 0.184 0.816 33 H 0.247 0.753 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.058 0.942 40 H 0.051 0.949 41 H 0.066 0.934 42 H 0.061 0.939 43 H 0.054 0.946 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.589 -4.684 14.948 15.676 hybrid contribution -0.736 -0.716 -0.712 1.250 sum -1.325 -5.400 14.236 15.283 Atomic orbital electron populations 1.21798 0.93063 1.03662 1.02149 1.20439 0.96995 0.85153 1.05960 1.23693 0.99831 0.96210 0.83717 1.21893 1.07757 0.93005 1.01013 1.22190 0.99673 0.99957 0.92131 1.21979 1.12989 0.85871 0.95127 1.16850 0.77956 0.85242 0.81989 1.90788 1.50747 1.26654 1.76867 1.45918 1.64622 1.18416 1.04730 1.22064 0.99454 0.88519 0.91339 1.20369 0.97442 0.86315 0.88507 0.91288 1.21868 0.99287 0.97441 1.00700 1.44005 1.01716 1.07737 1.77902 1.19230 1.10358 0.86856 1.22575 0.92495 1.25688 1.02395 0.98774 0.96032 1.70131 1.28673 1.28208 1.28738 0.85496 0.79209 0.80539 0.76916 1.19336 1.21970 1.22349 1.20835 0.84897 0.98446 0.94416 1.22269 0.99960 1.00347 0.98945 1.84071 1.64745 1.22075 1.36380 0.94235 0.89372 0.91340 0.89905 0.85298 0.79302 0.81581 0.75261 0.92076 0.92260 0.93663 0.93192 0.92969 0.94188 0.94853 0.93358 0.93860 0.94592 0.92350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.89 71.98 0.71 -1.53 16 2 C -0.05 -0.78 6.47 29.85 0.19 -0.59 16 3 C 0.02 0.43 6.57 24.97 0.16 0.60 16 4 C -0.22 -4.74 10.77 22.07 0.24 -4.50 16 5 C -0.12 -3.31 10.62 22.39 0.24 -3.07 16 6 C -0.11 -3.68 7.13 24.07 0.17 -3.50 16 7 C 0.59 22.93 7.55 86.44 0.65 23.58 16 8 O -0.57 -24.09 16.86 -4.33 -0.07 -24.16 16 9 N -0.69 -27.09 3.98 -467.09 -1.86 -28.96 16 10 C 0.11 4.38 4.33 86.38 0.37 4.76 16 11 C 0.18 7.91 1.92 44.99 0.09 8.00 16 12 H 0.07 3.49 6.04 -2.39 -0.01 3.48 16 13 C -0.13 -5.46 9.05 71.98 0.65 -4.81 16 14 N -0.59 -27.11 1.85 -678.03 -1.25 -28.36 16 15 C -0.26 -13.21 9.26 84.03 0.78 -12.43 16 16 H 0.06 2.93 7.89 -2.91 -0.02 2.91 16 17 C -0.03 -1.63 4.85 84.86 0.41 -1.22 16 18 N -0.91 -49.77 10.60 21.65 0.23 -49.54 16 19 Si 0.95 42.75 29.59 68.60 2.03 44.78 16 20 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 21 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 22 H -0.30 -13.57 7.11 99.48 0.71 -12.86 16 23 C 0.14 5.64 5.67 86.38 0.49 6.13 16 24 C -0.16 -5.68 9.87 71.98 0.71 -4.97 16 25 O -0.18 -5.74 10.40 -5.07 -0.05 -5.79 16 26 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.09 0.95 8.14 -2.39 -0.02 0.94 16 28 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.19 2.58 8.06 -2.91 -0.02 2.56 16 32 H 0.17 4.19 8.06 -2.91 -0.02 4.17 16 33 H 0.41 17.12 7.65 -92.71 -0.71 16.41 16 34 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.06 2.31 7.05 -2.39 -0.02 2.30 16 36 H 0.04 1.68 6.67 -2.38 -0.02 1.66 16 37 H 0.05 2.34 7.40 -2.39 -0.02 2.32 16 38 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.25 13.34 8.31 -92.71 -0.77 12.57 16 40 H 0.03 1.39 8.09 -2.39 -0.02 1.37 16 41 H 0.05 1.84 6.45 -2.39 -0.02 1.82 16 42 H 0.04 1.64 4.99 -2.39 -0.01 1.63 16 43 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -61.39 358.49 5.18 -56.21 By element: Atomic # 1 Polarization: 29.07 SS G_CDS: 0.28 Total: 29.36 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: 5.87 Total: 6.45 kcal Atomic # 7 Polarization: -103.97 SS G_CDS: -2.88 Total: -106.85 kcal Atomic # 8 Polarization: -29.83 SS G_CDS: -0.13 Total: -29.95 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -61.39 5.18 -56.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154049819.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.889 kcal (2) G-P(sol) polarization free energy of solvation -61.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds