Wall clock time and date at job start Tue Mar 31 2020 06:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50703 * 109.47224 * 2 1 4 4 C 1.40366 * 126.64268 * 265.03759 * 3 2 1 5 5 C 1.35122 * 107.11322 * 179.97438 * 4 3 2 6 6 O 1.33933 * 108.76848 * 359.77067 * 5 4 3 7 7 C 1.34906 * 109.38460 * 0.37939 * 6 5 4 8 8 C 1.46660 * 125.98726 * 179.88497 * 7 6 5 9 9 O 1.21696 * 119.99867 * 179.69177 * 8 7 6 10 10 N 1.34770 * 119.99969 * 359.69150 * 8 7 6 11 11 C 1.46499 * 120.00144 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47758 * 180.02562 * 11 10 8 13 13 H 1.09003 * 109.46927 * 64.99568 * 12 11 10 14 14 C 1.52998 * 109.47424 * 184.99889 * 12 11 10 15 15 N 1.46498 * 109.46760 * 305.00230 * 12 11 10 16 16 C 1.36943 * 120.00059 * 123.52181 * 15 12 11 17 17 H 1.07999 * 119.99904 * 208.83747 * 16 15 12 18 18 C 1.38809 * 119.99706 * 29.11277 * 16 15 12 19 19 N 1.31618 * 120.00334 * 18.63280 * 18 16 15 20 20 Si 1.86797 * 119.99733 * 198.63168 * 18 16 15 21 21 H 1.48503 * 109.47368 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47160 * 120.00179 * 20 18 16 23 23 H 1.48498 * 109.47041 * 239.99906 * 20 18 16 24 24 C 1.46495 * 120.00095 * 303.51820 * 15 12 11 25 25 C 1.53000 * 109.47604 * 264.27653 * 24 15 12 26 26 H 1.09001 * 109.46837 * 60.00220 * 1 2 3 27 27 H 1.08999 * 109.47493 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47043 * 300.00380 * 1 2 3 29 29 H 1.08994 * 109.47375 * 239.99755 * 2 1 3 30 30 H 1.09004 * 109.46969 * 119.99276 * 2 1 3 31 31 H 1.08001 * 126.44027 * 359.96704 * 4 3 2 32 32 H 1.08005 * 125.61547 * 180.02562 * 5 4 3 33 33 H 0.97000 * 120.00278 * 0.02562 * 10 8 7 34 34 H 1.09004 * 109.47315 * 59.99832 * 11 10 8 35 35 H 1.09006 * 109.47015 * 300.00342 * 11 10 8 36 36 H 1.09003 * 109.46874 * 60.00201 * 14 12 11 37 37 H 1.08999 * 109.46541 * 179.97438 * 14 12 11 38 38 H 1.08991 * 109.47194 * 299.99872 * 14 12 11 39 39 H 0.96997 * 119.99939 * 180.02562 * 19 18 16 40 40 H 1.09001 * 109.47024 * 24.28167 * 24 15 12 41 41 H 1.09001 * 109.47529 * 144.27559 * 24 15 12 42 42 H 1.08998 * 109.46770 * 299.99864 * 25 24 15 43 43 H 1.08999 * 109.47057 * 59.99877 * 25 24 15 44 44 H 1.09000 * 109.47166 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4034 2.1782 -1.1220 5 6 2.7906 3.3920 -0.6721 6 8 2.6703 3.4157 0.6616 7 6 2.2141 2.2210 1.0913 8 6 1.9532 1.8491 2.4858 9 8 1.5353 0.7373 2.7510 10 7 2.1762 2.7385 3.4735 11 6 1.9150 2.3672 4.8663 12 6 2.2476 3.5484 5.7801 13 1 1.5673 4.3736 5.5693 14 6 2.0943 3.1217 7.2414 15 7 3.6269 3.9789 5.5392 16 6 3.8874 5.2756 5.1842 17 1 4.7495 5.5062 4.5759 18 6 3.0466 6.2943 5.6110 19 7 2.2354 6.0953 6.6282 20 14 3.0663 7.9475 4.7416 21 1 4.0598 7.9148 3.6383 22 1 1.7184 8.2309 4.1864 23 1 3.4368 9.0112 5.7093 24 6 4.7277 3.0223 5.6780 25 6 5.3369 3.1450 7.0761 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 2.3834 1.8519 -2.1514 32 1 3.1358 4.2100 -1.2871 33 1 2.5089 3.6248 3.2621 34 1 2.5349 1.5123 5.1369 35 1 0.8634 2.1042 4.9812 36 1 2.7746 2.2965 7.4522 37 1 2.3316 3.9632 7.8923 38 1 1.0680 2.8014 7.4207 39 1 1.6476 6.8070 6.9262 40 1 4.3498 2.0101 5.5338 41 1 5.4908 3.2352 4.9293 42 1 5.7148 4.1571 7.2202 43 1 4.5739 2.9320 7.8248 44 1 6.1556 2.4329 7.1795 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155061759.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:22 Heat of formation + Delta-G solvation = -13.039684 kcal Electronic energy + Delta-G solvation = -24793.135769 eV Core-core repulsion = 21326.676975 eV Total energy + Delta-G solvation = -3466.458793 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.58743 -39.04050 -36.94573 -35.01117 -33.66514 -31.87185 -31.35804 -30.88593 -29.27498 -28.31750 -25.72028 -24.05439 -23.67863 -22.35930 -21.62028 -20.84369 -19.62774 -19.13823 -17.80007 -16.89163 -16.22299 -15.85132 -15.48637 -14.77855 -14.66579 -14.36581 -13.94244 -13.81402 -13.61051 -13.36254 -12.94044 -12.70899 -12.52128 -12.38535 -12.30925 -11.92386 -11.60056 -11.43234 -11.31193 -11.27793 -11.03590 -10.89521 -10.80812 -10.48674 -10.27814 -9.91541 -9.72761 -9.64666 -9.58876 -9.50591 -8.70163 -8.52392 -8.30244 -6.74483 -5.87146 -3.30313 1.25424 2.41631 2.91260 3.32023 3.41896 3.42747 3.50993 3.74501 4.43871 4.75247 4.79657 5.09285 5.28854 5.32831 5.37743 5.44913 5.51658 5.69704 5.74577 5.87325 6.01053 6.04197 6.09635 6.13983 6.27697 6.31744 6.35694 6.43707 6.45627 6.49831 6.55397 6.70091 6.72014 6.78124 6.93449 6.97776 7.06094 7.27235 7.51382 7.61061 7.78801 8.07131 8.40399 8.57567 9.16098 9.78516 10.32665 11.20061 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.015305 B = 0.005155 C = 0.004402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.024328 B = 5429.902930 C = 6358.800638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.059 4.059 3 C -0.098 4.098 4 C -0.226 4.226 5 C -0.011 4.011 6 O -0.156 6.156 7 C -0.068 4.068 8 C 0.590 3.410 9 O -0.535 6.535 10 N -0.690 5.690 11 C 0.100 3.900 12 C 0.176 3.824 13 H 0.103 0.897 14 C -0.143 4.143 15 N -0.583 5.583 16 C -0.256 4.256 17 H 0.067 0.933 18 C 0.007 3.993 19 N -0.893 5.893 20 Si 0.895 3.105 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.291 1.291 24 C 0.142 3.858 25 C -0.166 4.166 26 H 0.048 0.952 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.152 0.848 32 H 0.206 0.794 33 H 0.416 0.584 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.030 0.970 37 H 0.081 0.919 38 H 0.030 0.970 39 H 0.253 0.747 40 H 0.037 0.963 41 H 0.036 0.964 42 H 0.052 0.948 43 H 0.050 0.950 44 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.824 -7.515 -11.500 13.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.096 4.096 3 C -0.101 4.101 4 C -0.245 4.245 5 C -0.081 4.081 6 O -0.051 6.051 7 C -0.121 4.121 8 C 0.376 3.624 9 O -0.416 6.416 10 N -0.339 5.339 11 C -0.025 4.025 12 C 0.069 3.931 13 H 0.121 0.879 14 C -0.202 4.202 15 N -0.305 5.305 16 C -0.386 4.386 17 H 0.084 0.916 18 C -0.192 4.192 19 N -0.537 5.537 20 Si 0.725 3.275 21 H -0.202 1.202 22 H -0.216 1.216 23 H -0.218 1.218 24 C 0.015 3.985 25 C -0.226 4.226 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.107 0.893 31 H 0.169 0.831 32 H 0.223 0.777 33 H 0.253 0.747 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.049 0.951 37 H 0.099 0.901 38 H 0.049 0.951 39 H 0.063 0.937 40 H 0.056 0.944 41 H 0.054 0.946 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -1.155 -7.913 -10.983 13.586 hybrid contribution 0.236 1.443 -0.629 1.591 sum -0.919 -6.470 -11.611 13.324 Atomic orbital electron populations 1.21629 0.94636 1.01505 1.01845 1.20073 0.96165 0.90337 1.03058 1.20561 1.00718 0.97729 0.91063 1.21660 1.08255 0.94650 0.99947 1.24308 1.02738 0.99948 0.81118 1.84150 1.64643 1.33452 1.22809 1.22142 1.09561 0.85002 0.95369 1.16615 0.78912 0.85034 0.81867 1.90798 1.47768 1.20778 1.82254 1.45921 1.64149 1.17170 1.06701 1.22213 0.99557 1.00357 0.80360 1.20532 0.88051 0.93563 0.90975 0.87882 1.22115 0.98011 1.00832 0.99235 1.44017 0.99548 1.06944 1.79996 1.19195 1.11586 0.82607 1.25212 0.91573 1.25026 1.00609 0.97364 0.96195 1.70019 1.26901 1.32674 1.24060 0.86338 0.77464 0.84345 0.79321 1.20248 1.21595 1.21828 1.20796 0.90778 0.92676 0.94205 1.22391 0.99262 1.00521 1.00412 0.93304 0.92523 0.92150 0.91519 0.89285 0.83075 0.77695 0.74726 0.92506 0.92387 0.95136 0.90050 0.95123 0.93676 0.94440 0.94581 0.92906 0.93137 0.95354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.89 37.15 0.37 -1.32 16 2 C -0.06 -0.76 5.72 -27.88 -0.16 -0.92 16 3 C -0.10 -1.40 5.45 -104.43 -0.57 -1.97 16 4 C -0.23 -2.65 10.83 -39.89 -0.43 -3.08 16 5 C -0.01 -0.13 12.08 29.62 0.36 0.23 16 6 O -0.16 -2.43 10.40 5.01 0.05 -2.38 16 7 C -0.07 -1.13 7.13 -36.80 -0.26 -1.40 16 8 C 0.59 10.94 7.79 -12.86 -0.10 10.84 16 9 O -0.54 -10.61 14.64 5.19 0.08 -10.54 16 10 N -0.69 -13.11 5.38 -61.62 -0.33 -13.44 16 11 C 0.10 1.93 4.85 -4.04 -0.02 1.91 16 12 C 0.18 3.78 1.93 -67.93 -0.13 3.65 16 13 H 0.10 2.53 5.93 -51.93 -0.31 2.22 16 14 C -0.14 -2.93 8.25 37.16 0.31 -2.62 16 15 N -0.58 -13.13 1.84 -165.67 -0.30 -13.43 16 16 C -0.26 -6.41 9.50 -15.06 -0.14 -6.55 16 17 H 0.07 1.68 7.90 -52.49 -0.41 1.26 16 18 C 0.01 0.19 4.84 -17.43 -0.08 0.10 16 19 N -0.89 -23.65 10.24 55.49 0.57 -23.08 16 20 Si 0.90 20.53 29.59 -169.99 -5.03 15.50 16 21 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 22 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 C 0.14 2.88 5.73 -4.04 -0.02 2.85 16 25 C -0.17 -3.22 10.02 37.16 0.37 -2.85 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.86 7.92 -51.93 -0.41 0.45 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.09 1.31 6.73 -51.93 -0.35 0.96 16 31 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 32 H 0.21 1.52 8.06 -52.48 -0.42 1.09 16 33 H 0.42 8.25 7.84 -40.82 -0.32 7.93 16 34 H 0.06 1.10 6.76 -51.93 -0.35 0.75 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.03 0.58 6.50 -51.93 -0.34 0.24 16 37 H 0.08 1.91 7.22 -51.93 -0.37 1.53 16 38 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.25 6.61 8.31 -40.82 -0.34 6.27 16 40 H 0.04 0.72 6.35 -51.93 -0.33 0.39 16 41 H 0.04 0.73 8.09 -51.93 -0.42 0.31 16 42 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.05 1.00 6.03 -51.93 -0.31 0.68 16 44 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 356.11 15.07 5.37 5.37 Total: -1.00 -27.66 356.11 -6.99 -34.65 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -6.87 Total: 8.48 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: -0.52 Total: -1.13 kcal Atomic # 7 Polarization: -49.88 SS G_CDS: -0.07 Total: -49.95 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: 0.13 Total: -12.92 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.03 Total: 15.50 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -27.66 -6.99 -34.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155061759.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.614 kcal (2) G-P(sol) polarization free energy of solvation -27.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds