Wall clock time and date at job start Tue Mar 31 2020 06:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50703 * 109.47224 * 2 1 4 4 C 1.40366 * 126.64268 * 265.03759 * 3 2 1 5 5 C 1.35122 * 107.11322 * 179.97438 * 4 3 2 6 6 O 1.33933 * 108.76848 * 359.77067 * 5 4 3 7 7 C 1.34906 * 109.38460 * 0.37939 * 6 5 4 8 8 C 1.46660 * 125.98726 * 179.88497 * 7 6 5 9 9 O 1.21696 * 119.99867 * 179.69177 * 8 7 6 10 10 N 1.34770 * 119.99969 * 359.69150 * 8 7 6 11 11 C 1.46499 * 120.00144 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47758 * 180.02562 * 11 10 8 13 13 H 1.09003 * 109.46927 * 64.99568 * 12 11 10 14 14 C 1.52998 * 109.47424 * 184.99889 * 12 11 10 15 15 N 1.46498 * 109.46760 * 305.00230 * 12 11 10 16 16 C 1.36943 * 120.00059 * 123.52181 * 15 12 11 17 17 H 1.07999 * 119.99904 * 208.83747 * 16 15 12 18 18 C 1.38809 * 119.99706 * 29.11277 * 16 15 12 19 19 N 1.31618 * 120.00334 * 18.63280 * 18 16 15 20 20 Si 1.86797 * 119.99733 * 198.63168 * 18 16 15 21 21 H 1.48503 * 109.47368 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47160 * 120.00179 * 20 18 16 23 23 H 1.48498 * 109.47041 * 239.99906 * 20 18 16 24 24 C 1.46495 * 120.00095 * 303.51820 * 15 12 11 25 25 C 1.53000 * 109.47604 * 264.27653 * 24 15 12 26 26 H 1.09001 * 109.46837 * 60.00220 * 1 2 3 27 27 H 1.08999 * 109.47493 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47043 * 300.00380 * 1 2 3 29 29 H 1.08994 * 109.47375 * 239.99755 * 2 1 3 30 30 H 1.09004 * 109.46969 * 119.99276 * 2 1 3 31 31 H 1.08001 * 126.44027 * 359.96704 * 4 3 2 32 32 H 1.08005 * 125.61547 * 180.02562 * 5 4 3 33 33 H 0.97000 * 120.00278 * 0.02562 * 10 8 7 34 34 H 1.09004 * 109.47315 * 59.99832 * 11 10 8 35 35 H 1.09006 * 109.47015 * 300.00342 * 11 10 8 36 36 H 1.09003 * 109.46874 * 60.00201 * 14 12 11 37 37 H 1.08999 * 109.46541 * 179.97438 * 14 12 11 38 38 H 1.08991 * 109.47194 * 299.99872 * 14 12 11 39 39 H 0.96997 * 119.99939 * 180.02562 * 19 18 16 40 40 H 1.09001 * 109.47024 * 24.28167 * 24 15 12 41 41 H 1.09001 * 109.47529 * 144.27559 * 24 15 12 42 42 H 1.08998 * 109.46770 * 299.99864 * 25 24 15 43 43 H 1.08999 * 109.47057 * 59.99877 * 25 24 15 44 44 H 1.09000 * 109.47166 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4034 2.1782 -1.1220 5 6 2.7906 3.3920 -0.6721 6 8 2.6703 3.4157 0.6616 7 6 2.2141 2.2210 1.0913 8 6 1.9532 1.8491 2.4858 9 8 1.5353 0.7373 2.7510 10 7 2.1762 2.7385 3.4735 11 6 1.9150 2.3672 4.8663 12 6 2.2476 3.5484 5.7801 13 1 1.5673 4.3736 5.5693 14 6 2.0943 3.1217 7.2414 15 7 3.6269 3.9789 5.5392 16 6 3.8874 5.2756 5.1842 17 1 4.7495 5.5062 4.5759 18 6 3.0466 6.2943 5.6110 19 7 2.2354 6.0953 6.6282 20 14 3.0663 7.9475 4.7416 21 1 4.0598 7.9148 3.6383 22 1 1.7184 8.2309 4.1864 23 1 3.4368 9.0112 5.7093 24 6 4.7277 3.0223 5.6780 25 6 5.3369 3.1450 7.0761 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 2.3834 1.8519 -2.1514 32 1 3.1358 4.2100 -1.2871 33 1 2.5089 3.6248 3.2621 34 1 2.5349 1.5123 5.1369 35 1 0.8634 2.1042 4.9812 36 1 2.7746 2.2965 7.4522 37 1 2.3316 3.9632 7.8923 38 1 1.0680 2.8014 7.4207 39 1 1.6476 6.8070 6.9262 40 1 4.3498 2.0101 5.5338 41 1 5.4908 3.2352 4.9293 42 1 5.7148 4.1571 7.2202 43 1 4.5739 2.9320 7.8248 44 1 6.1556 2.4329 7.1795 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155061759.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:21 Heat of formation + Delta-G solvation = -28.323359 kcal Electronic energy + Delta-G solvation = -24793.798519 eV Core-core repulsion = 21326.676975 eV Total energy + Delta-G solvation = -3467.121543 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.65023 -40.50129 -38.62955 -36.14335 -35.16781 -33.74356 -32.64136 -32.19472 -30.45262 -30.10004 -27.19308 -25.84412 -24.85677 -23.51078 -23.27164 -21.96520 -21.16950 -20.56194 -19.16403 -18.58191 -17.38017 -17.04415 -16.97521 -16.48099 -16.35713 -15.53493 -15.51376 -15.29948 -14.92389 -14.55548 -14.38644 -14.03811 -13.95244 -13.67011 -13.54410 -13.30755 -13.25175 -13.09225 -13.00750 -12.83086 -12.63861 -12.26758 -12.21218 -12.07711 -11.91551 -11.73634 -11.29877 -11.26819 -11.09865 -10.66167 -10.45724 -10.09730 -9.50379 -8.60604 -7.81992 -5.25685 0.09765 1.45718 1.47228 1.52635 1.59728 1.82865 2.16681 2.40524 2.55418 3.33069 3.63000 3.77934 3.82715 3.93431 4.22326 4.42509 4.44009 4.47447 4.51191 4.53832 4.64651 4.71667 4.82069 4.84742 4.88961 4.89608 5.02378 5.04806 5.07287 5.09004 5.16615 5.30092 5.33003 5.36403 5.41446 5.52821 5.59504 5.74079 5.75384 5.90144 5.97915 6.47762 6.60511 7.11580 7.24090 7.93179 8.42540 9.22930 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.015305 B = 0.005155 C = 0.004402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.024328 B = 5429.902930 C = 6358.800638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.061 4.061 3 C -0.090 4.090 4 C -0.227 4.227 5 C 0.003 3.997 6 O -0.179 6.179 7 C -0.115 4.115 8 C 0.590 3.410 9 O -0.557 6.557 10 N -0.696 5.696 11 C 0.113 3.887 12 C 0.182 3.818 13 H 0.072 0.928 14 C -0.131 4.131 15 N -0.591 5.591 16 C -0.256 4.256 17 H 0.061 0.939 18 C -0.034 4.034 19 N -0.914 5.914 20 Si 0.949 3.051 21 H -0.270 1.270 22 H -0.294 1.294 23 H -0.299 1.299 24 C 0.141 3.859 25 C -0.156 4.156 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.030 0.970 29 H 0.096 0.904 30 H 0.065 0.935 31 H 0.187 0.813 32 H 0.250 0.750 33 H 0.410 0.590 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.043 0.957 37 H 0.050 0.950 38 H 0.045 0.955 39 H 0.247 0.753 40 H 0.049 0.951 41 H 0.036 0.964 42 H 0.029 0.971 43 H 0.043 0.957 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.278 -8.194 -13.977 16.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.098 4.098 3 C -0.093 4.093 4 C -0.246 4.246 5 C -0.066 4.066 6 O -0.074 6.074 7 C -0.166 4.166 8 C 0.377 3.623 9 O -0.439 6.439 10 N -0.344 5.344 11 C -0.012 4.012 12 C 0.075 3.925 13 H 0.090 0.910 14 C -0.191 4.191 15 N -0.313 5.313 16 C -0.386 4.386 17 H 0.078 0.922 18 C -0.231 4.231 19 N -0.559 5.559 20 Si 0.779 3.221 21 H -0.194 1.194 22 H -0.221 1.221 23 H -0.227 1.227 24 C 0.015 3.985 25 C -0.215 4.215 26 H 0.082 0.918 27 H 0.091 0.909 28 H 0.049 0.951 29 H 0.115 0.885 30 H 0.084 0.916 31 H 0.204 0.796 32 H 0.266 0.734 33 H 0.246 0.754 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.062 0.938 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.057 0.943 40 H 0.067 0.933 41 H 0.054 0.946 42 H 0.048 0.952 43 H 0.062 0.938 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.597 -8.614 -13.468 15.998 hybrid contribution 0.105 1.618 0.023 1.622 sum -0.492 -6.996 -13.445 15.164 Atomic orbital electron populations 1.21586 0.94087 1.02373 1.01089 1.20140 0.96594 0.89727 1.03346 1.20973 0.98852 0.98094 0.91409 1.22056 1.07664 0.94105 1.00764 1.25314 1.00267 1.01230 0.79838 1.84126 1.65234 1.33217 1.24862 1.21826 1.13534 0.86476 0.94799 1.16873 0.78113 0.84543 0.82747 1.90768 1.48729 1.21432 1.82981 1.45895 1.64752 1.17083 1.06685 1.21959 0.99664 0.99103 0.80457 1.20376 0.87002 0.93201 0.91941 0.90999 1.21947 0.99295 0.99899 0.97922 1.44099 1.00505 1.06577 1.80091 1.19314 1.11072 0.83734 1.24476 0.92155 1.25550 1.00919 0.99783 0.96885 1.70147 1.27592 1.33025 1.25146 0.85490 0.77095 0.81162 0.78349 1.19418 1.22076 1.22677 1.20865 0.90198 0.92629 0.94769 1.22252 0.99921 0.99955 0.99384 0.91753 0.90912 0.95089 0.88534 0.91611 0.79561 0.73436 0.75354 0.92375 0.92102 0.93847 0.93108 0.93551 0.94343 0.93302 0.94611 0.95173 0.93807 0.92267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 9.89 71.98 0.71 -2.36 16 2 C -0.06 -1.48 5.72 29.85 0.17 -1.31 16 3 C -0.09 -2.44 5.45 -19.74 -0.11 -2.55 16 4 C -0.23 -4.53 10.83 22.07 0.24 -4.29 16 5 C 0.00 0.06 12.08 67.10 0.81 0.87 16 6 O -0.18 -5.39 10.40 -4.97 -0.05 -5.44 16 7 C -0.11 -3.78 7.13 24.07 0.17 -3.61 16 8 C 0.59 22.25 7.79 86.44 0.67 22.93 16 9 O -0.56 -22.54 14.64 -4.33 -0.06 -22.61 16 10 N -0.70 -26.96 5.38 -467.10 -2.51 -29.47 16 11 C 0.11 4.41 4.85 86.38 0.42 4.83 16 12 C 0.18 7.94 1.93 44.99 0.09 8.02 16 13 H 0.07 3.63 5.93 -2.39 -0.01 3.62 16 14 C -0.13 -5.42 8.25 71.98 0.59 -4.83 16 15 N -0.59 -26.83 1.84 -678.05 -1.25 -28.07 16 16 C -0.26 -12.91 9.50 84.03 0.80 -12.11 16 17 H 0.06 3.08 7.90 -2.91 -0.02 3.05 16 18 C -0.03 -1.78 4.84 84.86 0.41 -1.37 16 19 N -0.91 -49.59 10.24 21.65 0.22 -49.37 16 20 Si 0.95 42.78 29.59 68.60 2.03 44.81 16 21 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 22 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 23 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 24 C 0.14 5.64 5.73 86.38 0.49 6.14 16 25 C -0.16 -5.90 10.02 71.98 0.72 -5.18 16 26 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.03 0.88 7.92 -2.39 -0.02 0.86 16 29 H 0.10 1.74 8.14 -2.39 -0.02 1.73 16 30 H 0.07 1.92 6.73 -2.38 -0.02 1.90 16 31 H 0.19 2.32 8.06 -2.91 -0.02 2.30 16 32 H 0.25 2.50 8.06 -2.91 -0.02 2.48 16 33 H 0.41 16.72 7.84 -92.71 -0.73 15.99 16 34 H 0.06 2.24 6.76 -2.38 -0.02 2.22 16 35 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 36 H 0.04 1.64 6.50 -2.39 -0.02 1.62 16 37 H 0.05 2.41 7.22 -2.39 -0.02 2.40 16 38 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.25 13.26 8.31 -92.71 -0.77 12.49 16 40 H 0.05 1.84 6.35 -2.39 -0.02 1.83 16 41 H 0.04 1.43 8.09 -2.39 -0.02 1.41 16 42 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.04 1.70 6.03 -2.39 -0.01 1.68 16 44 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -61.25 356.11 4.84 -56.41 By element: Atomic # 1 Polarization: 28.29 SS G_CDS: 0.27 Total: 28.56 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: 6.19 Total: 5.18 kcal Atomic # 7 Polarization: -103.37 SS G_CDS: -3.54 Total: -106.91 kcal Atomic # 8 Polarization: -27.93 SS G_CDS: -0.12 Total: -28.05 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -61.25 4.84 -56.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155061759.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.083 kcal (2) G-P(sol) polarization free energy of solvation -61.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds