Wall clock time and date at job start Tue Mar 31 2020 07:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35620 * 116.99933 * 2 1 4 4 C 1.39152 * 120.50128 * 359.97252 * 3 2 1 5 5 C 1.38317 * 118.62640 * 180.02562 * 4 3 2 6 6 C 1.39935 * 119.59206 * 359.97438 * 5 4 3 7 7 N 1.38907 * 119.49513 * 180.02562 * 6 5 4 8 8 C 1.46507 * 119.99702 * 359.97438 * 7 6 5 9 9 H 1.08995 * 109.47262 * 325.00253 * 8 7 6 10 10 C 1.53002 * 109.46933 * 85.00272 * 8 7 6 11 11 O 1.42901 * 109.47156 * 62.77793 * 10 8 7 12 12 C 1.53004 * 109.46745 * 204.99967 * 8 7 6 13 13 C 1.52995 * 109.47126 * 65.86006 * 12 8 7 14 14 C 1.53000 * 109.46671 * 185.85875 * 12 8 7 15 15 C 1.53002 * 109.47325 * 305.85726 * 12 8 7 16 16 N 1.31870 * 121.01430 * 359.71979 * 6 5 4 17 17 C 1.33828 * 121.46560 * 0.56957 * 16 6 5 18 18 C 1.40910 * 119.84563 * 179.70965 * 17 16 6 19 19 H 1.08005 * 119.99959 * 179.72871 * 18 17 16 20 20 C 1.40025 * 120.00208 * 359.45000 * 18 17 16 21 21 N 1.30774 * 120.00004 * 0.27722 * 20 18 17 22 22 Si 1.86800 * 120.00101 * 180.27568 * 20 18 17 23 23 H 1.48497 * 109.47204 * 90.00090 * 22 20 18 24 24 H 1.48498 * 109.47044 * 210.00282 * 22 20 18 25 25 H 1.48501 * 109.47095 * 330.00198 * 22 20 18 26 26 H 1.08994 * 109.46779 * 300.00519 * 1 2 3 27 27 H 1.08993 * 109.46888 * 60.00425 * 1 2 3 28 28 H 1.09002 * 109.46927 * 180.02562 * 1 2 3 29 29 H 1.07994 * 120.68915 * 0.04211 * 4 3 2 30 30 H 1.08001 * 120.20214 * 179.97438 * 5 4 3 31 31 H 0.97002 * 120.00358 * 180.02562 * 7 6 5 32 32 H 1.09000 * 109.46883 * 182.78225 * 10 8 7 33 33 H 1.08997 * 109.46935 * 302.78069 * 10 8 7 34 34 H 0.96694 * 113.99776 * 179.97438 * 11 10 8 35 35 H 1.08997 * 109.47194 * 60.00115 * 13 12 8 36 36 H 1.09008 * 109.47106 * 179.97438 * 13 12 8 37 37 H 1.09000 * 109.47328 * 299.99662 * 13 12 8 38 38 H 1.08997 * 109.47375 * 60.00399 * 14 12 8 39 39 H 1.09008 * 109.47177 * 180.02562 * 14 12 8 40 40 H 1.08997 * 109.47512 * 299.99801 * 14 12 8 41 41 H 1.08994 * 109.47125 * 49.85782 * 15 12 8 42 42 H 1.09001 * 109.46688 * 169.86164 * 15 12 8 43 43 H 1.09001 * 109.47187 * 289.85752 * 15 12 8 44 44 H 0.97001 * 120.00401 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0448 1.2084 0.0000 4 6 1.2971 2.3820 -0.0006 5 6 1.9650 3.5932 -0.0011 6 6 3.3643 3.6107 -0.0005 7 7 4.0330 4.8283 -0.0005 8 6 3.2735 6.0811 -0.0017 9 1 2.3658 5.9551 -0.5917 10 6 2.9005 6.4527 1.4349 11 8 4.0906 6.6810 2.1922 12 6 4.1276 7.1946 -0.6111 13 6 4.3784 6.8936 -2.0900 14 6 3.3932 8.5304 -0.4799 15 6 5.4654 7.2735 0.1273 16 7 4.0578 2.4892 0.0061 17 6 3.4544 1.2947 0.0011 18 6 4.2292 0.1176 0.0022 19 1 3.7448 -0.8477 0.0026 20 6 5.6270 0.1995 -0.0030 21 7 6.2136 1.3683 -0.0036 22 14 6.6540 -1.3608 -0.0093 23 1 6.9208 -1.7723 -1.4110 24 1 7.9416 -1.1087 0.6862 25 1 5.9160 -2.4420 0.6919 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 0.2177 2.3479 -0.0003 30 1 1.4100 4.5197 -0.0020 31 1 5.0028 4.8490 -0.0004 32 1 2.2935 7.3580 1.4301 33 1 2.3339 5.6378 1.8855 34 1 3.9296 6.9219 3.1147 35 1 3.4254 6.8375 -2.6161 36 1 4.9866 7.6872 -2.5243 37 1 4.9016 5.9420 -2.1835 38 1 3.2146 8.7449 0.5737 39 1 4.0015 9.3238 -0.9145 40 1 2.4402 8.4743 -1.0059 41 1 5.9053 6.2782 0.1894 42 1 6.1406 7.9362 -0.4140 43 1 5.3031 7.6623 1.1326 44 1 7.1819 1.4251 -0.0068 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168553894.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:56 Heat of formation + Delta-G solvation = -45.516424 kcal Electronic energy + Delta-G solvation = -24868.670027 eV Core-core repulsion = 21400.802937 eV Total energy + Delta-G solvation = -3467.867090 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.31435 -38.41811 -36.52896 -35.47338 -33.95249 -32.57016 -30.26685 -29.12378 -28.04368 -26.93779 -26.65774 -26.13120 -24.92868 -22.59812 -21.46017 -20.29218 -18.46839 -17.45625 -17.07774 -16.51728 -16.39503 -15.53666 -14.97371 -14.59442 -14.55689 -14.35748 -14.06609 -13.49542 -13.19327 -12.91677 -12.80318 -12.50811 -12.38708 -12.23657 -11.97715 -11.87100 -11.58567 -11.37507 -11.34039 -11.17949 -11.11299 -10.60991 -10.53390 -10.46763 -10.35616 -10.25108 -10.09567 -9.73570 -9.46277 -9.38820 -8.34149 -7.94223 -7.58226 -6.31016 -6.16932 -4.29699 2.88250 3.16006 3.19527 3.20926 3.33479 4.04024 4.19759 4.58243 4.69509 4.87777 4.88157 5.06811 5.21757 5.53623 5.56810 5.63699 5.77729 5.83705 5.84117 5.84588 5.97475 5.99916 6.00871 6.03787 6.08063 6.14804 6.16842 6.27756 6.37485 6.42322 6.49347 6.62999 6.79119 6.85322 6.91860 7.27107 7.38721 7.57993 7.76242 7.87761 8.30165 8.35678 8.54610 8.80896 8.88118 9.26033 10.26532 10.42430 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.014490 B = 0.005305 C = 0.004282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.932982 B = 5276.661594 C = 6537.341277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.313 6.313 3 C -0.080 4.080 4 C -0.113 4.113 5 C -0.353 4.353 6 C 0.398 3.602 7 N -0.721 5.721 8 C 0.179 3.821 9 H 0.083 0.917 10 C 0.057 3.943 11 O -0.551 6.551 12 C -0.069 4.069 13 C -0.141 4.141 14 C -0.139 4.139 15 C -0.141 4.141 16 N -0.513 5.513 17 C 0.290 3.710 18 C -0.413 4.413 19 H 0.090 0.910 20 C 0.068 3.932 21 N -0.712 5.712 22 Si 0.907 3.093 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.261 1.261 26 H 0.035 0.965 27 H 0.036 0.964 28 H 0.079 0.921 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.398 0.602 32 H 0.042 0.958 33 H 0.049 0.951 34 H 0.362 0.638 35 H 0.050 0.950 36 H 0.049 0.951 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.053 0.947 40 H 0.051 0.949 41 H 0.056 0.944 42 H 0.038 0.962 43 H 0.085 0.915 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.343 10.395 0.796 11.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.226 6.226 3 C -0.128 4.128 4 C -0.137 4.137 5 C -0.379 4.379 6 C 0.160 3.840 7 N -0.359 5.359 8 C 0.071 3.929 9 H 0.101 0.899 10 C -0.023 4.023 11 O -0.356 6.356 12 C -0.069 4.069 13 C -0.198 4.198 14 C -0.197 4.197 15 C -0.198 4.198 16 N -0.236 5.236 17 C 0.162 3.838 18 C -0.445 4.445 19 H 0.108 0.892 20 C -0.157 4.157 21 N -0.333 5.333 22 Si 0.731 3.269 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.185 1.185 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.097 0.903 29 H 0.115 0.885 30 H 0.108 0.892 31 H 0.235 0.765 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.208 0.792 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.057 0.943 43 H 0.103 0.897 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.033 10.281 0.213 10.721 hybrid contribution -0.877 -0.298 0.506 1.055 sum -3.910 9.983 0.720 10.745 Atomic orbital electron populations 1.22667 0.82329 1.01406 0.99563 1.85919 1.17722 1.28001 1.90977 1.20026 0.93446 0.83046 1.16273 1.20649 0.97117 0.92441 1.03536 1.20346 0.92927 0.96096 1.28549 1.18528 0.87648 0.86879 0.90990 1.44163 1.07928 1.00649 1.83115 1.20733 0.95111 0.84316 0.92774 0.89880 1.22866 0.87144 0.98354 0.93915 1.86693 1.31423 1.92288 1.25163 1.20685 0.96524 0.94179 0.95557 1.21867 1.01355 1.01826 0.94747 1.21907 0.99784 0.96293 1.01672 1.22028 0.94796 1.01735 1.01234 1.68408 1.34667 0.94931 1.25608 1.17774 0.84967 0.91115 0.89958 1.19525 0.90522 0.93122 1.41372 0.89210 1.26074 0.98761 0.97063 0.93839 1.70171 1.10149 1.24394 1.28630 0.86340 0.79081 0.82334 0.79131 1.19524 1.20302 1.18514 0.94601 0.94569 0.90265 0.88489 0.89224 0.76456 0.93948 0.93305 0.79201 0.93112 0.93192 0.91850 0.92320 0.92773 0.93014 0.92514 0.94304 0.89691 0.91901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.65 9.83 101.05 0.99 1.65 16 2 O -0.31 -7.47 9.61 -18.56 -0.18 -7.65 16 3 C -0.08 -2.08 6.74 -38.11 -0.26 -2.34 16 4 C -0.11 -2.64 9.12 -39.21 -0.36 -3.00 16 5 C -0.35 -8.12 8.82 -38.92 -0.34 -8.46 16 6 C 0.40 9.72 7.63 -155.26 -1.18 8.53 16 7 N -0.72 -14.61 4.56 -53.86 -0.25 -14.86 16 8 C 0.18 2.84 1.46 -67.92 -0.10 2.74 16 9 H 0.08 1.36 6.43 -51.93 -0.33 1.03 16 10 C 0.06 0.81 6.13 37.16 0.23 1.03 16 11 O -0.55 -7.61 9.82 -35.23 -0.35 -7.95 16 12 C -0.07 -0.93 0.62 -154.51 -0.10 -1.02 16 13 C -0.14 -1.95 8.35 37.15 0.31 -1.64 16 14 C -0.14 -1.53 7.94 37.16 0.30 -1.23 16 15 C -0.14 -1.97 7.47 37.16 0.28 -1.70 16 16 N -0.51 -14.29 7.88 -10.20 -0.08 -14.37 16 17 C 0.29 8.25 6.56 -84.85 -0.56 7.70 16 18 C -0.41 -11.54 8.94 -37.90 -0.34 -11.88 16 19 H 0.09 2.44 7.31 -52.48 -0.38 2.06 16 20 C 0.07 1.77 5.50 -17.33 -0.10 1.67 16 21 N -0.71 -19.14 11.45 55.55 0.64 -18.50 16 22 Si 0.91 19.25 29.56 -169.99 -5.02 14.23 16 23 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 24 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 25 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 26 H 0.04 0.59 7.69 -51.93 -0.40 0.19 16 27 H 0.04 0.60 7.69 -51.93 -0.40 0.20 16 28 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.10 1.98 6.43 -52.49 -0.34 1.64 16 30 H 0.09 1.82 6.07 -52.49 -0.32 1.51 16 31 H 0.40 8.45 6.52 -40.82 -0.27 8.19 16 32 H 0.04 0.49 6.51 -51.93 -0.34 0.15 16 33 H 0.05 0.80 7.68 -51.93 -0.40 0.40 16 34 H 0.36 3.51 9.12 45.56 0.42 3.92 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.05 0.61 8.14 -51.92 -0.42 0.18 16 37 H 0.06 1.02 7.78 -51.93 -0.40 0.62 16 38 H 0.06 0.61 6.40 -51.93 -0.33 0.28 16 39 H 0.05 0.55 8.14 -51.92 -0.42 0.12 16 40 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.92 5.91 -51.93 -0.31 0.62 16 42 H 0.04 0.49 8.11 -51.93 -0.42 0.07 16 43 H 0.08 1.18 5.52 -51.93 -0.29 0.89 16 44 H 0.27 6.61 8.30 -40.82 -0.34 6.27 16 LS Contribution 343.46 15.07 5.18 5.18 Total: -1.00 -31.07 343.46 -7.04 -38.12 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: -5.76 Total: 13.75 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: -1.22 Total: -7.94 kcal Atomic # 7 Polarization: -48.04 SS G_CDS: 0.31 Total: -47.73 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: -0.52 Total: -15.60 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.02 Total: 14.23 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.07 -7.04 -38.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168553894.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.397 kcal (2) G-P(sol) polarization free energy of solvation -31.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds