Wall clock time and date at job start Tue Mar 31 2020 07:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35620 * 116.99933 * 2 1 4 4 C 1.39152 * 120.50128 * 359.97252 * 3 2 1 5 5 C 1.38317 * 118.62640 * 180.02562 * 4 3 2 6 6 C 1.39935 * 119.59206 * 359.97438 * 5 4 3 7 7 N 1.38907 * 119.49513 * 180.02562 * 6 5 4 8 8 C 1.46507 * 119.99702 * 359.97438 * 7 6 5 9 9 H 1.08995 * 109.47262 * 325.00253 * 8 7 6 10 10 C 1.53002 * 109.46933 * 85.00272 * 8 7 6 11 11 O 1.42901 * 109.47156 * 62.77793 * 10 8 7 12 12 C 1.53004 * 109.46745 * 204.99967 * 8 7 6 13 13 C 1.52995 * 109.47126 * 65.86006 * 12 8 7 14 14 C 1.53000 * 109.46671 * 185.85875 * 12 8 7 15 15 C 1.53002 * 109.47325 * 305.85726 * 12 8 7 16 16 N 1.31870 * 121.01430 * 359.71979 * 6 5 4 17 17 C 1.33828 * 121.46560 * 0.56957 * 16 6 5 18 18 C 1.40910 * 119.84563 * 179.70965 * 17 16 6 19 19 H 1.08005 * 119.99959 * 179.72871 * 18 17 16 20 20 C 1.40025 * 120.00208 * 359.45000 * 18 17 16 21 21 N 1.30774 * 120.00004 * 0.27722 * 20 18 17 22 22 Si 1.86800 * 120.00101 * 180.27568 * 20 18 17 23 23 H 1.48497 * 109.47204 * 90.00090 * 22 20 18 24 24 H 1.48498 * 109.47044 * 210.00282 * 22 20 18 25 25 H 1.48501 * 109.47095 * 330.00198 * 22 20 18 26 26 H 1.08994 * 109.46779 * 300.00519 * 1 2 3 27 27 H 1.08993 * 109.46888 * 60.00425 * 1 2 3 28 28 H 1.09002 * 109.46927 * 180.02562 * 1 2 3 29 29 H 1.07994 * 120.68915 * 0.04211 * 4 3 2 30 30 H 1.08001 * 120.20214 * 179.97438 * 5 4 3 31 31 H 0.97002 * 120.00358 * 180.02562 * 7 6 5 32 32 H 1.09000 * 109.46883 * 182.78225 * 10 8 7 33 33 H 1.08997 * 109.46935 * 302.78069 * 10 8 7 34 34 H 0.96694 * 113.99776 * 179.97438 * 11 10 8 35 35 H 1.08997 * 109.47194 * 60.00115 * 13 12 8 36 36 H 1.09008 * 109.47106 * 179.97438 * 13 12 8 37 37 H 1.09000 * 109.47328 * 299.99662 * 13 12 8 38 38 H 1.08997 * 109.47375 * 60.00399 * 14 12 8 39 39 H 1.09008 * 109.47177 * 180.02562 * 14 12 8 40 40 H 1.08997 * 109.47512 * 299.99801 * 14 12 8 41 41 H 1.08994 * 109.47125 * 49.85782 * 15 12 8 42 42 H 1.09001 * 109.46688 * 169.86164 * 15 12 8 43 43 H 1.09001 * 109.47187 * 289.85752 * 15 12 8 44 44 H 0.97001 * 120.00401 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0448 1.2084 0.0000 4 6 1.2971 2.3820 -0.0006 5 6 1.9650 3.5932 -0.0011 6 6 3.3643 3.6107 -0.0005 7 7 4.0330 4.8283 -0.0005 8 6 3.2735 6.0811 -0.0017 9 1 2.3658 5.9551 -0.5917 10 6 2.9005 6.4527 1.4349 11 8 4.0906 6.6810 2.1922 12 6 4.1276 7.1946 -0.6111 13 6 4.3784 6.8936 -2.0900 14 6 3.3932 8.5304 -0.4799 15 6 5.4654 7.2735 0.1273 16 7 4.0578 2.4892 0.0061 17 6 3.4544 1.2947 0.0011 18 6 4.2292 0.1176 0.0022 19 1 3.7448 -0.8477 0.0026 20 6 5.6270 0.1995 -0.0030 21 7 6.2136 1.3683 -0.0036 22 14 6.6540 -1.3608 -0.0093 23 1 6.9208 -1.7723 -1.4110 24 1 7.9416 -1.1087 0.6862 25 1 5.9160 -2.4420 0.6919 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 0.2177 2.3479 -0.0003 30 1 1.4100 4.5197 -0.0020 31 1 5.0028 4.8490 -0.0004 32 1 2.2935 7.3580 1.4301 33 1 2.3339 5.6378 1.8855 34 1 3.9296 6.9219 3.1147 35 1 3.4254 6.8375 -2.6161 36 1 4.9866 7.6872 -2.5243 37 1 4.9016 5.9420 -2.1835 38 1 3.2146 8.7449 0.5737 39 1 4.0015 9.3238 -0.9145 40 1 2.4402 8.4743 -1.0059 41 1 5.9053 6.2782 0.1894 42 1 6.1406 7.9362 -0.4140 43 1 5.3031 7.6623 1.1326 44 1 7.1819 1.4251 -0.0068 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168553894.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:56 Heat of formation + Delta-G solvation = -66.891196 kcal Electronic energy + Delta-G solvation = -24869.596907 eV Core-core repulsion = 21400.802937 eV Total energy + Delta-G solvation = -3468.793970 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.84387 -39.96102 -38.24967 -36.58900 -35.75163 -34.23349 -32.16309 -30.75384 -29.34556 -28.07910 -28.02650 -27.59732 -26.65433 -23.90432 -23.31834 -22.01496 -19.79713 -19.19709 -18.37991 -18.17510 -18.01922 -17.00420 -16.62202 -16.24753 -16.18795 -15.51349 -15.43102 -15.01530 -14.62921 -14.37484 -14.18647 -14.04470 -13.97179 -13.45415 -13.28603 -13.25283 -12.89988 -12.89686 -12.82990 -12.61934 -12.46726 -12.38374 -12.09217 -12.00938 -11.61515 -11.53110 -11.43606 -11.34599 -11.15222 -10.58254 -10.04117 -9.86733 -9.51855 -8.22898 -7.98174 -6.30239 1.02274 1.32040 1.41143 1.54637 1.58574 2.26779 2.67535 2.93587 3.07271 3.50970 3.75642 3.92723 4.04986 4.13573 4.29363 4.43709 4.46733 4.49025 4.52410 4.55812 4.59752 4.75346 4.76628 4.82061 4.87308 4.88245 4.97226 5.01023 5.01622 5.14117 5.19007 5.32492 5.34321 5.37727 5.52043 5.60476 5.73070 5.78778 5.92837 6.29010 6.46112 6.80197 6.89472 7.01021 7.07076 7.38688 8.35265 8.51754 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.014490 B = 0.005305 C = 0.004282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.932982 B = 5276.661594 C = 6537.341277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.339 6.339 3 C -0.103 4.103 4 C -0.111 4.111 5 C -0.345 4.345 6 C 0.379 3.621 7 N -0.716 5.716 8 C 0.169 3.831 9 H 0.081 0.919 10 C 0.064 3.936 11 O -0.566 6.566 12 C -0.063 4.063 13 C -0.139 4.139 14 C -0.133 4.133 15 C -0.136 4.136 16 N -0.546 5.546 17 C 0.254 3.746 18 C -0.453 4.453 19 H 0.082 0.918 20 C 0.025 3.975 21 N -0.748 5.748 22 Si 0.984 3.016 23 H -0.263 1.263 24 H -0.267 1.267 25 H -0.259 1.259 26 H 0.046 0.954 27 H 0.047 0.953 28 H 0.110 0.890 29 H 0.131 0.869 30 H 0.120 0.880 31 H 0.390 0.610 32 H 0.080 0.920 33 H 0.025 0.975 34 H 0.382 0.618 35 H 0.054 0.946 36 H 0.068 0.932 37 H 0.030 0.970 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.061 0.939 41 H 0.025 0.975 42 H 0.051 0.949 43 H 0.090 0.910 44 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.478 12.002 0.930 13.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.254 6.254 3 C -0.151 4.151 4 C -0.135 4.135 5 C -0.371 4.371 6 C 0.140 3.860 7 N -0.352 5.352 8 C 0.063 3.937 9 H 0.099 0.901 10 C -0.015 4.015 11 O -0.373 6.373 12 C -0.063 4.063 13 C -0.196 4.196 14 C -0.191 4.191 15 C -0.193 4.193 16 N -0.270 5.270 17 C 0.125 3.875 18 C -0.485 4.485 19 H 0.100 0.900 20 C -0.197 4.197 21 N -0.371 5.371 22 Si 0.805 3.195 23 H -0.188 1.188 24 H -0.191 1.191 25 H -0.183 1.183 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.128 0.872 29 H 0.148 0.852 30 H 0.137 0.863 31 H 0.226 0.774 32 H 0.098 0.902 33 H 0.043 0.957 34 H 0.230 0.770 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.049 0.951 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.044 0.956 42 H 0.070 0.930 43 H 0.108 0.892 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.202 11.944 0.362 12.666 hybrid contribution -0.660 -0.659 0.470 1.044 sum -4.862 11.285 0.832 12.316 Atomic orbital electron populations 1.23007 0.79188 1.03920 1.00507 1.85851 1.20997 1.27399 1.91121 1.20066 0.93205 0.84556 1.17278 1.21027 0.98772 0.91676 1.02070 1.20700 0.92592 0.97316 1.26525 1.18959 0.88724 0.87425 0.90864 1.44355 1.07743 1.00896 1.82165 1.21075 0.94979 0.83155 0.94459 0.90097 1.22720 0.87282 0.99118 0.92366 1.86642 1.31509 1.92357 1.26774 1.20669 0.96142 0.94823 0.94716 1.21851 1.01490 1.00784 0.95478 1.21866 1.00086 0.94486 1.02649 1.21975 0.95247 1.00130 1.01908 1.68343 1.36178 0.95810 1.26627 1.18214 0.86774 0.91678 0.90846 1.19713 0.91902 0.92956 1.43927 0.89968 1.26928 0.99286 1.00631 0.92835 1.70265 1.10655 1.26572 1.29593 0.85186 0.77283 0.77682 0.79368 1.18797 1.19096 1.18290 0.93497 0.93473 0.87167 0.85157 0.86252 0.77403 0.90232 0.95679 0.76969 0.92704 0.91282 0.95113 0.91384 0.91403 0.91964 0.95614 0.92977 0.89200 0.91393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.99 9.83 113.37 1.11 2.10 16 2 O -0.34 -16.41 9.61 -89.32 -0.86 -17.26 16 3 C -0.10 -5.48 6.74 23.23 0.16 -5.32 16 4 C -0.11 -5.12 9.12 22.51 0.21 -4.92 16 5 C -0.35 -15.69 8.82 22.70 0.20 -15.49 16 6 C 0.38 18.96 7.63 133.45 1.02 19.98 16 7 N -0.72 -29.56 4.56 -324.30 -1.48 -31.04 16 8 C 0.17 5.17 1.46 44.99 0.07 5.24 16 9 H 0.08 2.50 6.43 -2.39 -0.02 2.48 16 10 C 0.06 1.70 6.13 71.98 0.44 2.14 16 11 O -0.57 -14.67 9.82 -148.98 -1.46 -16.13 16 12 C -0.06 -1.58 0.62 -52.18 -0.03 -1.62 16 13 C -0.14 -3.70 8.35 71.98 0.60 -3.09 16 14 C -0.13 -2.44 7.94 71.98 0.57 -1.86 16 15 C -0.14 -3.65 7.47 71.98 0.54 -3.11 16 16 N -0.55 -31.76 7.88 -186.18 -1.47 -33.23 16 17 C 0.25 15.08 6.56 40.23 0.26 15.34 16 18 C -0.45 -26.54 8.94 23.36 0.21 -26.33 16 19 H 0.08 4.72 7.31 -2.91 -0.02 4.70 16 20 C 0.02 1.34 5.50 85.28 0.47 1.81 16 21 N -0.75 -42.04 11.45 21.84 0.25 -41.79 16 22 Si 0.98 40.75 29.56 68.60 2.03 42.78 16 23 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 24 H -0.27 -10.41 7.11 99.48 0.71 -9.70 16 25 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 26 H 0.05 1.47 7.69 -2.39 -0.02 1.45 16 27 H 0.05 1.47 7.69 -2.39 -0.02 1.46 16 28 H 0.11 2.97 8.14 -2.39 -0.02 2.96 16 29 H 0.13 5.00 6.43 -2.91 -0.02 4.98 16 30 H 0.12 4.61 6.07 -2.91 -0.02 4.59 16 31 H 0.39 17.30 6.52 -92.71 -0.60 16.70 16 32 H 0.08 1.54 6.51 -2.39 -0.02 1.52 16 33 H 0.02 0.78 7.68 -2.39 -0.02 0.76 16 34 H 0.38 6.60 9.12 -74.06 -0.68 5.92 16 35 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 37 H 0.03 1.00 7.78 -2.39 -0.02 0.98 16 38 H 0.07 1.13 6.40 -2.39 -0.02 1.12 16 39 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 40 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.02 0.84 5.91 -2.39 -0.01 0.83 16 42 H 0.05 1.24 8.11 -2.39 -0.02 1.22 16 43 H 0.09 2.33 5.52 -2.39 -0.01 2.31 16 44 H 0.28 14.03 8.30 -92.71 -0.77 13.26 16 Total: -1.00 -71.46 343.46 2.58 -68.87 By element: Atomic # 1 Polarization: 43.20 SS G_CDS: -0.25 Total: 42.95 kcal Atomic # 6 Polarization: -20.98 SS G_CDS: 5.82 Total: -15.16 kcal Atomic # 7 Polarization: -103.36 SS G_CDS: -2.69 Total: -106.05 kcal Atomic # 8 Polarization: -31.07 SS G_CDS: -2.32 Total: -33.39 kcal Atomic # 14 Polarization: 40.75 SS G_CDS: 2.03 Total: 42.78 kcal Total: -71.46 2.58 -68.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168553894.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.981 kcal (2) G-P(sol) polarization free energy of solvation -71.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds